Merged trunk changes into the development branch
updated copyright notices
Replacing most of the C-code with C++ code, and migrating the config.h file into the PROJECT_BINARY_DIR so that we can have multiple builds on the same architecture.
updating gengetopt runs
Creating busticated version of OpenMD
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Bug fixes for non-declared objects
Many performance improvements
(1) RoughShell Model is working; (20)Adding a new option into Hydro which allows user to generate the beads only
refactor Hydrodynamics module.
Bead Model is working
Adding Hydrodynamics Module
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