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Revision 1851 - Directory Listing - [select for diffs]
Modified Wed Feb 20 15:46:34 2013 UTC (12 years, 2 months ago) by gezelter
Diff to previous 1850
Space typos

Revision 1850 - Directory Listing - [select for diffs]
Modified Wed Feb 20 15:39:39 2013 UTC (12 years, 2 months ago) by gezelter
Diff to previous 1832
Fixed a widespread typo in the license 

Revision 1832 - Directory Listing - [select for diffs]
Modified Thu Jan 10 18:15:02 2013 UTC (12 years, 3 months ago) by gezelter
Diff to previous 1826
More careful with casts, fixed windows compilation issues

Revision 1826 - Directory Listing - [select for diffs]
Modified Wed Jan 9 19:41:48 2013 UTC (12 years, 3 months ago) by gezelter
Diff to previous 1808
Cleaning more cruft and unused variables.

Revision 1808 - Directory Listing - [select for diffs]
Modified Mon Oct 22 20:42:10 2012 UTC (12 years, 6 months ago) by gezelter
Diff to previous 1798
A bug fix in the electric field for the new electrostatic code.  Also comment fixes for Doxygen 

Revision 1798 - Directory Listing - [select for diffs]
Modified Thu Sep 13 14:10:11 2012 UTC (12 years, 7 months ago) by gezelter
Diff to previous 1769
Merged trunk changes into the development branch

Revision 1769 - Directory Listing - [select for diffs]
Modified Mon Jul 9 14:15:52 2012 UTC (12 years, 9 months ago) by gezelter
Diff to previous 1767
Code readability updates.

Revision 1767 - Directory Listing - [select for diffs]
Modified Fri Jul 6 22:01:58 2012 UTC (12 years, 10 months ago) by gezelter
Diff to previous 1725
Various fixes required to compile OpenMD with the MS Visual C++ compiler

Revision 1725 - Directory Listing - [select for diffs]
Modified Sat May 26 18:13:43 2012 UTC (12 years, 11 months ago) by gezelter
Diff to previous 1710
Individual ForceField classes have been removed (they were essentially
all duplicates anyway).  

ForceField has moved to brains, and since only one force field is in
play at any time, the ForceFieldFactory and Register methods have been
removed.  


Revision 1710 - Directory Listing - [select for diffs]
Modified Fri May 18 21:44:02 2012 UTC (12 years, 11 months ago) by gezelter
Diff to previous 1668
Added an adapter layer between the AtomType and the rest of the code to 
handle the bolt-on capabilities of new types. 

Fixed a long-standing bug in how storageLayout was being set to the maximum
possible value.

Started to add infrastructure for Polarizable and fluc-Q calculations.

Revision 1668 - Directory Listing - [select for diffs]
Modified Fri Jan 6 19:03:05 2012 UTC (13 years, 4 months ago) by gezelter
Diff to previous 1665
Some fixes for CMake and single precision builds

Revision 1665 - Directory Listing - [select for diffs]
Modified Tue Nov 22 20:38:56 2011 UTC (13 years, 5 months ago) by gezelter
Diff to previous 1655
updated copyright notices

Revision 1655 - Directory Listing - [select for diffs]
Modified Mon Oct 3 20:32:45 2011 UTC (13 years, 7 months ago) by gezelter
Diff to previous 1647
Replacing most of the C-code with C++ code, and migrating the config.h
file into the PROJECT_BINARY_DIR so that we can have multiple builds
on the same architecture.

Revision 1647 - Directory Listing - [select for diffs]
Modified Mon Sep 26 21:20:11 2011 UTC (13 years, 7 months ago) by gezelter
Diff to previous 1630
fixing the build system

Revision 1630 - Directory Listing - [select for diffs]
Modified Wed Sep 14 21:40:12 2011 UTC (13 years, 7 months ago) by gezelter
Diff to previous 1562
updating gengetopt runs

Revision 1562 - Directory Listing - [select for diffs]
Modified Thu May 12 17:00:14 2011 UTC (13 years, 11 months ago) by gezelter
Diff to previous 1465
changes for cell linked lists

Revision 1465 - Directory Listing - [select for diffs]
Modified Fri Jul 9 23:08:25 2010 UTC (14 years, 10 months ago) by chuckv
Diff to previous 1442
Creating busticated version of OpenMD
Revision 1442 - Directory Listing - [select for diffs]
Modified Mon May 10 17:28:26 2010 UTC (14 years, 11 months ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 1390
Adding property set to svn entries

Revision 1390 - Directory Listing - [select for diffs]
Modified Wed Nov 25 20:02:06 2009 UTC (15 years, 5 months ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 1322
Almost all of the changes necessary to create OpenMD out of our old
project (OOPSE-4)

Revision 1322 - Directory Listing - [select for diffs]
Modified Mon Nov 24 22:01:56 2008 UTC (16 years, 5 months ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 1210
use the viscoConvert in OOPSEConstant

Revision 1210 - Directory Listing - [select for diffs]
Modified Wed Jan 23 03:45:33 2008 UTC (17 years, 3 months ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 1208
Removed older version of openbabel from our code.  We now have a
configure check to see if openbabel is installed and then we link to
the stuff we need.  Conversion to OOPSE's md format is handled by only
one application (atom2md), so most of the work went on there.
ElementsTable still needs some work to function in parallel.

Revision 1208 - Directory Listing - [select for diffs]
Modified Wed Jan 16 20:19:28 2008 UTC (17 years, 3 months ago) by xsun
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 1177
Changes to do hydrodynamics modeling and to explain a diff file

Revision 1177 - Directory Listing - [select for diffs]
Modified Tue Aug 14 17:40:33 2007 UTC (17 years, 8 months ago) by xsun
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 1027
Bug fixes for non-declared objects

Revision 1027 - Directory Listing - [select for diffs]
Modified Wed Aug 30 21:13:57 2006 UTC (18 years, 8 months ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 981
removed extra file in Hydro.cpp

Revision 981 - Directory Listing - [select for diffs]
Modified Mon Jun 5 18:24:45 2006 UTC (18 years, 11 months ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 978
Massive changes for GB code with multiple ellipsoid types (a la
Cleaver's paper).

Also, changes in hydrodynamics code to make HydroProp a somewhat
smarter class (rather than just a struct).

Revision 978 - Directory Listing - [select for diffs]
Modified Thu May 25 17:02:00 2006 UTC (18 years, 11 months ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 977
Fix a type promotion problem

Revision 977 - Directory Listing - [select for diffs]
Modified Thu May 25 16:27:27 2006 UTC (18 years, 11 months ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 972
replace double with RealType

Revision 972 - Directory Listing - [select for diffs]
Modified Wed May 24 18:31:12 2006 UTC (18 years, 11 months ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 963
fixes for Hydrodynamics

Revision 963 - Directory Listing - [select for diffs]
Modified Wed May 17 21:51:42 2006 UTC (18 years, 11 months ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 956
Adding single precision capabilities to c++ side

Revision 956 - Directory Listing - [select for diffs]
Modified Tue May 16 02:06:37 2006 UTC (18 years, 11 months ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 954
*** empty log message ***

Revision 954 - Directory Listing - [select for diffs]
Modified Wed May 10 01:44:48 2006 UTC (19 years ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 946
adding a gay-berne switch to Dump2XYZ

Revision 946 - Directory Listing - [select for diffs]
Modified Tue Apr 25 13:35:42 2006 UTC (19 years ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 945
Using OpenBabel element table to pick vdw radii for hydrodynamics
if the LJ sigma can't be found.

Revision 945 - Directory Listing - [select for diffs]
Modified Tue Apr 25 02:09:01 2006 UTC (19 years ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 944
Adding spherical boundary conditions to LD integrator

Revision 944 - Directory Listing - [select for diffs]
Modified Tue Apr 25 02:06:12 2006 UTC (19 years ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 938
Added EAM atom types to Hydro models

Revision 938 - Directory Listing - [select for diffs]
Modified Mon Apr 17 21:49:12 2006 UTC (19 years ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 921
Many performance improvements

Revision 921 - Directory Listing - [select for diffs]
Modified Wed Mar 29 18:09:26 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 915
(1) RoughShell Model is working; (20)Adding a new option into Hydro which allows user to generate the beads only

Revision 915 - Directory Listing - [select for diffs]
Modified Thu Mar 23 15:03:33 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 910
update writeBeads method

Revision 910 - Directory Listing - [select for diffs]
Modified Tue Mar 21 15:33:04 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 909
fix a bug in calculating hydrodynamics tensor when the radius of beads are not the same

Revision 909 - Directory Listing - [select for diffs]
Modified Tue Mar 21 00:26:55 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 908
Fix a bug in friction calculation for ellipsoid

Revision 908 - Directory Listing - [select for diffs]
Modified Mon Mar 20 19:12:14 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 907
Verify the correctness of Ellipsoid's hydrodynamics properties

Revision 907 - Directory Listing - [select for diffs]
Modified Fri Mar 17 23:51:54 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 906
New version of Hydro is working now.

Revision 906 - Directory Listing - [select for diffs]
Modified Fri Mar 17 23:20:35 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 904
refactor Hydrodynamics module.

Revision 904 - Directory Listing - [select for diffs]
Modified Thu Mar 16 22:50:48 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 903
LagevinDynamics is working?

Revision 903 - Directory Listing - [select for diffs]
Modified Thu Mar 16 21:52:23 2006 UTC (19 years, 1 month ago) by gezelter
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 902
fixed a const problem

Revision 902 - Directory Listing - [select for diffs]
Modified Wed Mar 15 22:08:25 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 901
unit conversion for diffusion tensor is wrong

Revision 901 - Directory Listing - [select for diffs]
Modified Wed Mar 15 21:28:49 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 900
change the epsilon of numeric_limit

Revision 900 - Directory Listing - [select for diffs]
Modified Wed Mar 15 20:58:47 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 898
correcting the unit in HydrodynamicsModel

Revision 898 - Directory Listing - [select for diffs]
Modified Wed Mar 15 15:51:44 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 897
Adding RoughShell and BeadModel

Revision 897 - Directory Listing - [select for diffs]
Modified Wed Mar 15 15:50:11 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 895
adding hydrodynamics module into build system

Revision 895 - Directory Listing - [select for diffs]
Modified Mon Mar 13 22:42:40 2006 UTC (19 years, 1 month ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 893
LangevinDynamics in progress

Revision 893 - Directory Listing - [select for diffs]
Modified Fri Feb 24 21:17:05 2006 UTC (19 years, 2 months ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 892
fix bugs in HydrodynamicsModel; (1) sign issue of Xirr calculation (2) out product of Rij

Revision 892 - Directory Listing - [select for diffs]
Modified Thu Feb 23 23:16:43 2006 UTC (19 years, 2 months ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Diff to previous 891
Bead Model is working

Revision 891 - Directory Listing - [select for diffs]
Added Wed Feb 22 20:35:16 2006 UTC (19 years, 2 months ago) by tim
Original Path: trunk/src/applications/hydrodynamics
Adding Hydrodynamics Module

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