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root/OpenMD/branches/development/src/applications/dynamicProps/DynamicPropsCmd.cpp
Revision: 1830
Committed: Wed Jan 9 22:02:30 2013 UTC (12 years, 3 months ago) by gezelter
File size: 30935 byte(s)
Log Message: 
Windows compilation fixes

File Contents

# User Rev Content
1 tim 320 /*
2 gezelter 1629 File autogenerated by gengetopt version 2.22.4
3 tim 320 generated with the following command:
4 gezelter 1812 gengetopt --file-name=DynamicPropsCmd --unamed-opts
5 tim 320
6     The developers of gengetopt consider the fixed text that goes in all
7     gengetopt output files to be in the public domain:
8     we make no copyright claims on it.
9     */
10    
11 chuckv 1098 /* If we use autoconf. */
12     #ifdef HAVE_CONFIG_H
13     #include "config.h"
14     #endif
15 tim 320
16     #include <stdio.h>
17     #include <stdlib.h>
18     #include <string.h>
19    
20 gezelter 1629 #ifndef FIX_UNUSED
21     #define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22     #endif
23 tim 320
24 gezelter 1830 #ifdef WIN32
25     #include "utils/wingetopt.h"
26     #else
27 gezelter 1629 #include <getopt.h>
28 gezelter 1830 #endif
29 gezelter 1629
30 tim 320 #include "DynamicPropsCmd.h"
31    
32 gezelter 1629 const char *gengetopt_args_info_purpose = "";
33    
34     const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
35    
36     const char *gengetopt_args_info_description = "";
37    
38     const char *gengetopt_args_info_help[] = {
39     " -h, --help Print help and exit",
40     " -V, --version Print version and exit",
41     " -i, --input=filename input dump file",
42     " -o, --output=filename output file name",
43     " --sele1=selection script select first stuntdouble set",
44     " --sele2=selection script select second stuntdouble set (if sele2 is not \n set, use script from sele1)",
45     " --order=INT Lengendre Polynomial Order",
46     " -m, --memory=memory specification\n Available memory (defaults to 2G) \n (default=`2G')",
47     "\n Group: dynamicProps\n an option of this group is required",
48 gezelter 1812 " -s, --selecorr selection correlation function",
49 gezelter 1629 " -r, --rcorr rmsd",
50     " -v, --vcorr velocity correlation function",
51     " -d, --dcorr dipole correlation function",
52     " -l, --lcorr Lengendre correlation function",
53 gezelter 1812 " -M, --sdcorr System dipole correlation function",
54 gezelter 1629 " --r_rcorr Radial rmsd",
55     " --thetacorr Angular rmsd",
56     " --drcorr Directional rmsd for particles with unit \n vectors",
57     " --helfandEcorr Helfand moment for thermal conductvity",
58     " -p, --momentum Helfand momentum for viscosity",
59     " --stresscorr Stress tensor correlation function",
60     0
61     };
62    
63     typedef enum {ARG_NO
64     , ARG_STRING
65     , ARG_INT
66     } cmdline_parser_arg_type;
67    
68 chuckv 1098 static
69     void clear_given (struct gengetopt_args_info *args_info);
70     static
71     void clear_args (struct gengetopt_args_info *args_info);
72    
73     static int
74 gezelter 1629 cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
75     struct cmdline_parser_params *params, const char *additional_error);
76 chuckv 1098
77     static int
78     cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
79    
80     static char *
81     gengetopt_strdup (const char *s);
82    
83     static
84     void clear_given (struct gengetopt_args_info *args_info)
85     {
86     args_info->help_given = 0 ;
87     args_info->version_given = 0 ;
88     args_info->input_given = 0 ;
89     args_info->output_given = 0 ;
90     args_info->sele1_given = 0 ;
91     args_info->sele2_given = 0 ;
92     args_info->order_given = 0 ;
93 gezelter 1629 args_info->memory_given = 0 ;
94 gezelter 1812 args_info->selecorr_given = 0 ;
95 chuckv 1098 args_info->rcorr_given = 0 ;
96     args_info->vcorr_given = 0 ;
97     args_info->dcorr_given = 0 ;
98     args_info->lcorr_given = 0 ;
99 gezelter 1629 args_info->sdcorr_given = 0 ;
100 chuckv 1098 args_info->r_rcorr_given = 0 ;
101 chuckv 1112 args_info->thetacorr_given = 0 ;
102 xsun 1183 args_info->drcorr_given = 0 ;
103 chuckv 1245 args_info->helfandEcorr_given = 0 ;
104 gezelter 1629 args_info->momentum_given = 0 ;
105     args_info->stresscorr_given = 0 ;
106 chuckv 1098 args_info->dynamicProps_group_counter = 0 ;
107     }
108    
109     static
110     void clear_args (struct gengetopt_args_info *args_info)
111     {
112 gezelter 1629 FIX_UNUSED (args_info);
113 chuckv 1098 args_info->input_arg = NULL;
114     args_info->input_orig = NULL;
115     args_info->output_arg = NULL;
116     args_info->output_orig = NULL;
117     args_info->sele1_arg = NULL;
118     args_info->sele1_orig = NULL;
119     args_info->sele2_arg = NULL;
120     args_info->sele2_orig = NULL;
121     args_info->order_orig = NULL;
122 gezelter 1629 args_info->memory_arg = gengetopt_strdup ("2G");
123     args_info->memory_orig = NULL;
124 chuckv 1098
125     }
126    
127 gezelter 1629 static
128     void init_args_info(struct gengetopt_args_info *args_info)
129     {
130    
131    
132     args_info->help_help = gengetopt_args_info_help[0] ;
133     args_info->version_help = gengetopt_args_info_help[1] ;
134     args_info->input_help = gengetopt_args_info_help[2] ;
135     args_info->output_help = gengetopt_args_info_help[3] ;
136     args_info->sele1_help = gengetopt_args_info_help[4] ;
137     args_info->sele2_help = gengetopt_args_info_help[5] ;
138     args_info->order_help = gengetopt_args_info_help[6] ;
139     args_info->memory_help = gengetopt_args_info_help[7] ;
140 gezelter 1812 args_info->selecorr_help = gengetopt_args_info_help[9] ;
141     args_info->rcorr_help = gengetopt_args_info_help[10] ;
142     args_info->vcorr_help = gengetopt_args_info_help[11] ;
143     args_info->dcorr_help = gengetopt_args_info_help[12] ;
144     args_info->lcorr_help = gengetopt_args_info_help[13] ;
145     args_info->sdcorr_help = gengetopt_args_info_help[14] ;
146     args_info->r_rcorr_help = gengetopt_args_info_help[15] ;
147     args_info->thetacorr_help = gengetopt_args_info_help[16] ;
148     args_info->drcorr_help = gengetopt_args_info_help[17] ;
149     args_info->helfandEcorr_help = gengetopt_args_info_help[18] ;
150     args_info->momentum_help = gengetopt_args_info_help[19] ;
151     args_info->stresscorr_help = gengetopt_args_info_help[20] ;
152 gezelter 1629
153     }
154    
155 tim 320 void
156     cmdline_parser_print_version (void)
157     {
158 gezelter 1629 printf ("%s %s\n",
159     (strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
160     CMDLINE_PARSER_VERSION);
161 tim 320 }
162    
163 gezelter 1629 static void print_help_common(void) {
164     cmdline_parser_print_version ();
165    
166     if (strlen(gengetopt_args_info_purpose) > 0)
167     printf("\n%s\n", gengetopt_args_info_purpose);
168    
169     if (strlen(gengetopt_args_info_usage) > 0)
170     printf("\n%s\n", gengetopt_args_info_usage);
171    
172     printf("\n");
173    
174     if (strlen(gengetopt_args_info_description) > 0)
175     printf("%s\n\n", gengetopt_args_info_description);
176     }
177    
178 tim 320 void
179     cmdline_parser_print_help (void)
180     {
181 gezelter 1629 int i = 0;
182     print_help_common();
183     while (gengetopt_args_info_help[i])
184     printf("%s\n", gengetopt_args_info_help[i++]);
185 tim 320 }
186    
187 chuckv 1098 void
188     cmdline_parser_init (struct gengetopt_args_info *args_info)
189     {
190     clear_given (args_info);
191     clear_args (args_info);
192 gezelter 1629 init_args_info (args_info);
193    
194     args_info->inputs = 0;
195     args_info->inputs_num = 0;
196 chuckv 1098 }
197 tim 320
198 gezelter 1629 void
199     cmdline_parser_params_init(struct cmdline_parser_params *params)
200     {
201     if (params)
202     {
203     params->override = 0;
204     params->initialize = 1;
205     params->check_required = 1;
206     params->check_ambiguity = 0;
207     params->print_errors = 1;
208     }
209     }
210    
211     struct cmdline_parser_params *
212     cmdline_parser_params_create(void)
213     {
214     struct cmdline_parser_params *params =
215     (struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
216     cmdline_parser_params_init(params);
217     return params;
218     }
219    
220 chuckv 1098 static void
221 gezelter 1629 free_string_field (char **s)
222     {
223     if (*s)
224     {
225     free (*s);
226     *s = 0;
227     }
228     }
229    
230    
231     static void
232 chuckv 1098 cmdline_parser_release (struct gengetopt_args_info *args_info)
233     {
234 gezelter 1629 unsigned int i;
235     free_string_field (&(args_info->input_arg));
236     free_string_field (&(args_info->input_orig));
237     free_string_field (&(args_info->output_arg));
238     free_string_field (&(args_info->output_orig));
239     free_string_field (&(args_info->sele1_arg));
240     free_string_field (&(args_info->sele1_orig));
241     free_string_field (&(args_info->sele2_arg));
242     free_string_field (&(args_info->sele2_orig));
243     free_string_field (&(args_info->order_orig));
244     free_string_field (&(args_info->memory_arg));
245     free_string_field (&(args_info->memory_orig));
246 chuckv 1098
247 gezelter 1629
248     for (i = 0; i < args_info->inputs_num; ++i)
249     free (args_info->inputs [i]);
250    
251     if (args_info->inputs_num)
252     free (args_info->inputs);
253    
254     clear_given (args_info);
255     }
256    
257    
258     static void
259     write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
260     {
261     FIX_UNUSED (values);
262     if (arg) {
263     fprintf(outfile, "%s=\"%s\"\n", opt, arg);
264     } else {
265     fprintf(outfile, "%s\n", opt);
266     }
267     }
268    
269    
270     int
271     cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
272     {
273     int i = 0;
274    
275     if (!outfile)
276 chuckv 1098 {
277 gezelter 1629 fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
278     return EXIT_FAILURE;
279 chuckv 1098 }
280 gezelter 1629
281     if (args_info->help_given)
282     write_into_file(outfile, "help", 0, 0 );
283     if (args_info->version_given)
284     write_into_file(outfile, "version", 0, 0 );
285     if (args_info->input_given)
286     write_into_file(outfile, "input", args_info->input_orig, 0);
287     if (args_info->output_given)
288     write_into_file(outfile, "output", args_info->output_orig, 0);
289     if (args_info->sele1_given)
290     write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
291     if (args_info->sele2_given)
292     write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
293     if (args_info->order_given)
294     write_into_file(outfile, "order", args_info->order_orig, 0);
295     if (args_info->memory_given)
296     write_into_file(outfile, "memory", args_info->memory_orig, 0);
297 gezelter 1812 if (args_info->selecorr_given)
298     write_into_file(outfile, "selecorr", 0, 0 );
299 gezelter 1629 if (args_info->rcorr_given)
300     write_into_file(outfile, "rcorr", 0, 0 );
301     if (args_info->vcorr_given)
302     write_into_file(outfile, "vcorr", 0, 0 );
303     if (args_info->dcorr_given)
304     write_into_file(outfile, "dcorr", 0, 0 );
305     if (args_info->lcorr_given)
306     write_into_file(outfile, "lcorr", 0, 0 );
307     if (args_info->sdcorr_given)
308     write_into_file(outfile, "sdcorr", 0, 0 );
309     if (args_info->r_rcorr_given)
310     write_into_file(outfile, "r_rcorr", 0, 0 );
311     if (args_info->thetacorr_given)
312     write_into_file(outfile, "thetacorr", 0, 0 );
313     if (args_info->drcorr_given)
314     write_into_file(outfile, "drcorr", 0, 0 );
315     if (args_info->helfandEcorr_given)
316     write_into_file(outfile, "helfandEcorr", 0, 0 );
317     if (args_info->momentum_given)
318     write_into_file(outfile, "momentum", 0, 0 );
319     if (args_info->stresscorr_given)
320     write_into_file(outfile, "stresscorr", 0, 0 );
321 chuckv 1098
322 gezelter 1629
323     i = EXIT_SUCCESS;
324     return i;
325 chuckv 1098 }
326 tim 320
327 chuckv 1098 int
328     cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
329     {
330     FILE *outfile;
331     int i = 0;
332    
333     outfile = fopen(filename, "w");
334    
335     if (!outfile)
336     {
337     fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
338     return EXIT_FAILURE;
339     }
340    
341 gezelter 1629 i = cmdline_parser_dump(outfile, args_info);
342 chuckv 1098 fclose (outfile);
343    
344     return i;
345     }
346    
347     void
348     cmdline_parser_free (struct gengetopt_args_info *args_info)
349     {
350     cmdline_parser_release (args_info);
351     }
352    
353 gezelter 1629 /** @brief replacement of strdup, which is not standard */
354 tim 320 char *
355     gengetopt_strdup (const char *s)
356     {
357 gezelter 1629 char *result = 0;
358 chuckv 1098 if (!s)
359     return result;
360    
361     result = (char*)malloc(strlen(s) + 1);
362 tim 320 if (result == (char*)0)
363     return (char*)0;
364     strcpy(result, s);
365     return result;
366     }
367    
368 chuckv 1098 static void
369     reset_group_dynamicProps(struct gengetopt_args_info *args_info)
370 tim 320 {
371 chuckv 1098 if (! args_info->dynamicProps_group_counter)
372     return;
373 tim 320
374 gezelter 1812 args_info->selecorr_given = 0 ;
375 tim 320 args_info->rcorr_given = 0 ;
376     args_info->vcorr_given = 0 ;
377     args_info->dcorr_given = 0 ;
378 tim 876 args_info->lcorr_given = 0 ;
379 gezelter 1629 args_info->sdcorr_given = 0 ;
380 chuckv 1098 args_info->r_rcorr_given = 0 ;
381 chuckv 1112 args_info->thetacorr_given = 0 ;
382 xsun 1183 args_info->drcorr_given = 0 ;
383 chuckv 1245 args_info->helfandEcorr_given = 0 ;
384 gezelter 1629 args_info->momentum_given = 0 ;
385     args_info->stresscorr_given = 0 ;
386 chuckv 1098
387     args_info->dynamicProps_group_counter = 0;
388 tim 876 }
389 tim 320
390 chuckv 1098 int
391 gezelter 1629 cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
392 chuckv 1098 {
393     return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
394     }
395 tim 320
396 chuckv 1098 int
397 gezelter 1629 cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
398     struct cmdline_parser_params *params)
399 chuckv 1098 {
400     int result;
401 gezelter 1629 result = cmdline_parser_internal (argc, argv, args_info, params, 0);
402 chuckv 1098
403 gezelter 1629 if (result == EXIT_FAILURE)
404     {
405     cmdline_parser_free (args_info);
406     exit (EXIT_FAILURE);
407     }
408    
409     return result;
410     }
411 chuckv 1098
412 gezelter 1629 int
413     cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
414     {
415     int result;
416     struct cmdline_parser_params params;
417    
418     params.override = override;
419     params.initialize = initialize;
420     params.check_required = check_required;
421     params.check_ambiguity = 0;
422     params.print_errors = 1;
423    
424     result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
425    
426 chuckv 1098 if (result == EXIT_FAILURE)
427     {
428     cmdline_parser_free (args_info);
429     exit (EXIT_FAILURE);
430     }
431    
432     return result;
433     }
434    
435     int
436     cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
437     {
438     int result = EXIT_SUCCESS;
439    
440 gezelter 1629 if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
441 chuckv 1098 result = EXIT_FAILURE;
442    
443     if (result == EXIT_FAILURE)
444     {
445     cmdline_parser_free (args_info);
446     exit (EXIT_FAILURE);
447     }
448    
449     return result;
450     }
451    
452     int
453     cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
454     {
455     int error = 0;
456 gezelter 1629 FIX_UNUSED (additional_error);
457 chuckv 1098
458 gezelter 1629 /* checks for required options */
459 chuckv 1098 if (! args_info->input_given)
460     {
461     fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
462     error = 1;
463     }
464 gezelter 1629
465 chuckv 1098 if (args_info->dynamicProps_group_counter == 0)
466     {
467 gezelter 1629 fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
468 chuckv 1098 error = 1;
469     }
470    
471    
472 gezelter 1629 /* checks for dependences among options */
473    
474 chuckv 1098 return error;
475     }
476    
477 gezelter 1629
478     static char *package_name = 0;
479    
480     /**
481     * @brief updates an option
482     * @param field the generic pointer to the field to update
483     * @param orig_field the pointer to the orig field
484     * @param field_given the pointer to the number of occurrence of this option
485     * @param prev_given the pointer to the number of occurrence already seen
486     * @param value the argument for this option (if null no arg was specified)
487     * @param possible_values the possible values for this option (if specified)
488     * @param default_value the default value (in case the option only accepts fixed values)
489     * @param arg_type the type of this option
490     * @param check_ambiguity @see cmdline_parser_params.check_ambiguity
491     * @param override @see cmdline_parser_params.override
492     * @param no_free whether to free a possible previous value
493     * @param multiple_option whether this is a multiple option
494     * @param long_opt the corresponding long option
495     * @param short_opt the corresponding short option (or '-' if none)
496     * @param additional_error possible further error specification
497     */
498     static
499     int update_arg(void *field, char **orig_field,
500     unsigned int *field_given, unsigned int *prev_given,
501     char *value, const char *possible_values[],
502     const char *default_value,
503     cmdline_parser_arg_type arg_type,
504     int check_ambiguity, int override,
505     int no_free, int multiple_option,
506     const char *long_opt, char short_opt,
507     const char *additional_error)
508     {
509     char *stop_char = 0;
510     const char *val = value;
511     int found;
512     char **string_field;
513     FIX_UNUSED (field);
514    
515     stop_char = 0;
516     found = 0;
517    
518     if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
519     {
520     if (short_opt != '-')
521     fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
522     package_name, long_opt, short_opt,
523     (additional_error ? additional_error : ""));
524     else
525     fprintf (stderr, "%s: `--%s' option given more than once%s\n",
526     package_name, long_opt,
527     (additional_error ? additional_error : ""));
528     return 1; /* failure */
529     }
530    
531     FIX_UNUSED (default_value);
532    
533     if (field_given && *field_given && ! override)
534     return 0;
535     if (prev_given)
536     (*prev_given)++;
537     if (field_given)
538     (*field_given)++;
539     if (possible_values)
540     val = possible_values[found];
541    
542     switch(arg_type) {
543     case ARG_INT:
544     if (val) *((int *)field) = strtol (val, &stop_char, 0);
545     break;
546     case ARG_STRING:
547     if (val) {
548     string_field = (char **)field;
549     if (!no_free && *string_field)
550     free (*string_field); /* free previous string */
551     *string_field = gengetopt_strdup (val);
552     }
553     break;
554     default:
555     break;
556     };
557    
558     /* check numeric conversion */
559     switch(arg_type) {
560     case ARG_INT:
561     if (val && !(stop_char && *stop_char == '\0')) {
562     fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
563     return 1; /* failure */
564     }
565     break;
566     default:
567     ;
568     };
569    
570     /* store the original value */
571     switch(arg_type) {
572     case ARG_NO:
573     break;
574     default:
575     if (value && orig_field) {
576     if (no_free) {
577     *orig_field = value;
578     } else {
579     if (*orig_field)
580     free (*orig_field); /* free previous string */
581     *orig_field = gengetopt_strdup (value);
582     }
583     }
584     };
585    
586     return 0; /* OK */
587     }
588    
589    
590 chuckv 1098 int
591 gezelter 1629 cmdline_parser_internal (
592     int argc, char **argv, struct gengetopt_args_info *args_info,
593     struct cmdline_parser_params *params, const char *additional_error)
594 chuckv 1098 {
595     int c; /* Character of the parsed option. */
596    
597     int error = 0;
598     struct gengetopt_args_info local_args_info;
599 gezelter 1629
600     int override;
601     int initialize;
602     int check_required;
603     int check_ambiguity;
604    
605     package_name = argv[0];
606    
607     override = params->override;
608     initialize = params->initialize;
609     check_required = params->check_required;
610     check_ambiguity = params->check_ambiguity;
611 chuckv 1098
612     if (initialize)
613     cmdline_parser_init (args_info);
614    
615     cmdline_parser_init (&local_args_info);
616    
617 tim 320 optarg = 0;
618 gezelter 1629 optind = 0;
619     opterr = params->print_errors;
620 tim 320 optopt = '?';
621    
622     while (1)
623     {
624     int option_index = 0;
625    
626     static struct option long_options[] = {
627     { "help", 0, NULL, 'h' },
628     { "version", 0, NULL, 'V' },
629     { "input", 1, NULL, 'i' },
630     { "output", 1, NULL, 'o' },
631     { "sele1", 1, NULL, 0 },
632     { "sele2", 1, NULL, 0 },
633 tim 876 { "order", 1, NULL, 0 },
634 gezelter 1629 { "memory", 1, NULL, 'm' },
635 gezelter 1812 { "selecorr", 0, NULL, 's' },
636 tim 320 { "rcorr", 0, NULL, 'r' },
637     { "vcorr", 0, NULL, 'v' },
638     { "dcorr", 0, NULL, 'd' },
639 tim 876 { "lcorr", 0, NULL, 'l' },
640 gezelter 1812 { "sdcorr", 0, NULL, 'M' },
641 chuckv 1098 { "r_rcorr", 0, NULL, 0 },
642 chuckv 1112 { "thetacorr", 0, NULL, 0 },
643 xsun 1183 { "drcorr", 0, NULL, 0 },
644 chuckv 1245 { "helfandEcorr", 0, NULL, 0 },
645 gezelter 1629 { "momentum", 0, NULL, 'p' },
646     { "stresscorr", 0, NULL, 0 },
647     { 0, 0, 0, 0 }
648 tim 320 };
649    
650 gezelter 1812 c = getopt_long (argc, argv, "hVi:o:m:srvdlMp", long_options, &option_index);
651 tim 320
652     if (c == -1) break; /* Exit from `while (1)' loop. */
653    
654     switch (c)
655     {
656     case 'h': /* Print help and exit. */
657     cmdline_parser_print_help ();
658 chuckv 1098 cmdline_parser_free (&local_args_info);
659 tim 320 exit (EXIT_SUCCESS);
660    
661     case 'V': /* Print version and exit. */
662     cmdline_parser_print_version ();
663 chuckv 1098 cmdline_parser_free (&local_args_info);
664 tim 320 exit (EXIT_SUCCESS);
665    
666     case 'i': /* input dump file. */
667 gezelter 1629
668    
669     if (update_arg( (void *)&(args_info->input_arg),
670     &(args_info->input_orig), &(args_info->input_given),
671     &(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
672     check_ambiguity, override, 0, 0,
673     "input", 'i',
674     additional_error))
675     goto failure;
676    
677 tim 320 break;
678     case 'o': /* output file name. */
679 gezelter 1629
680    
681     if (update_arg( (void *)&(args_info->output_arg),
682     &(args_info->output_orig), &(args_info->output_given),
683     &(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
684     check_ambiguity, override, 0, 0,
685     "output", 'o',
686     additional_error))
687     goto failure;
688    
689 tim 320 break;
690 gezelter 1629 case 'm': /* Available memory (defaults to 2G). */
691    
692    
693     if (update_arg( (void *)&(args_info->memory_arg),
694     &(args_info->memory_orig), &(args_info->memory_given),
695     &(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
696     check_ambiguity, override, 0, 0,
697     "memory", 'm',
698     additional_error))
699     goto failure;
700    
701     break;
702 gezelter 1812 case 's': /* selection correlation function. */
703    
704     if (args_info->dynamicProps_group_counter && override)
705     reset_group_dynamicProps (args_info);
706     args_info->dynamicProps_group_counter += 1;
707    
708     if (update_arg( 0 ,
709     0 , &(args_info->selecorr_given),
710     &(local_args_info.selecorr_given), optarg, 0, 0, ARG_NO,
711     check_ambiguity, override, 0, 0,
712     "selecorr", 's',
713     additional_error))
714     goto failure;
715    
716     break;
717 tim 917 case 'r': /* rmsd. */
718 gezelter 1629
719 chuckv 1098 if (args_info->dynamicProps_group_counter && override)
720     reset_group_dynamicProps (args_info);
721     args_info->dynamicProps_group_counter += 1;
722 gezelter 1629
723     if (update_arg( 0 ,
724     0 , &(args_info->rcorr_given),
725     &(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
726     check_ambiguity, override, 0, 0,
727     "rcorr", 'r',
728     additional_error))
729     goto failure;
730    
731 chuckv 1098 break;
732 tim 320 case 'v': /* velocity correlation function. */
733 gezelter 1629
734 chuckv 1098 if (args_info->dynamicProps_group_counter && override)
735     reset_group_dynamicProps (args_info);
736     args_info->dynamicProps_group_counter += 1;
737 gezelter 1629
738     if (update_arg( 0 ,
739     0 , &(args_info->vcorr_given),
740     &(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
741     check_ambiguity, override, 0, 0,
742     "vcorr", 'v',
743     additional_error))
744     goto failure;
745    
746 chuckv 1098 break;
747 tim 320 case 'd': /* dipole correlation function. */
748 gezelter 1629
749 chuckv 1098 if (args_info->dynamicProps_group_counter && override)
750     reset_group_dynamicProps (args_info);
751     args_info->dynamicProps_group_counter += 1;
752 gezelter 1629
753     if (update_arg( 0 ,
754     0 , &(args_info->dcorr_given),
755     &(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
756     check_ambiguity, override, 0, 0,
757     "dcorr", 'd',
758     additional_error))
759     goto failure;
760    
761 chuckv 1098 break;
762 tim 876 case 'l': /* Lengendre correlation function. */
763 gezelter 1629
764 chuckv 1098 if (args_info->dynamicProps_group_counter && override)
765     reset_group_dynamicProps (args_info);
766     args_info->dynamicProps_group_counter += 1;
767 gezelter 1629
768     if (update_arg( 0 ,
769     0 , &(args_info->lcorr_given),
770     &(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
771     check_ambiguity, override, 0, 0,
772     "lcorr", 'l',
773     additional_error))
774     goto failure;
775    
776 chuckv 1098 break;
777 gezelter 1812 case 'M': /* System dipole correlation function. */
778 gezelter 1629
779     if (args_info->dynamicProps_group_counter && override)
780     reset_group_dynamicProps (args_info);
781     args_info->dynamicProps_group_counter += 1;
782    
783     if (update_arg( 0 ,
784     0 , &(args_info->sdcorr_given),
785     &(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
786     check_ambiguity, override, 0, 0,
787 gezelter 1812 "sdcorr", 'M',
788 gezelter 1629 additional_error))
789     goto failure;
790    
791     break;
792     case 'p': /* Helfand momentum for viscosity. */
793    
794     if (args_info->dynamicProps_group_counter && override)
795     reset_group_dynamicProps (args_info);
796     args_info->dynamicProps_group_counter += 1;
797    
798     if (update_arg( 0 ,
799     0 , &(args_info->momentum_given),
800     &(local_args_info.momentum_given), optarg, 0, 0, ARG_NO,
801     check_ambiguity, override, 0, 0,
802     "momentum", 'p',
803     additional_error))
804     goto failure;
805    
806     break;
807 tim 320
808     case 0: /* Long option with no short option */
809     /* select first stuntdouble set. */
810     if (strcmp (long_options[option_index].name, "sele1") == 0)
811 tim 876 {
812 gezelter 1629
813    
814     if (update_arg( (void *)&(args_info->sele1_arg),
815     &(args_info->sele1_orig), &(args_info->sele1_given),
816     &(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
817     check_ambiguity, override, 0, 0,
818     "sele1", '-',
819     additional_error))
820     goto failure;
821    
822 tim 876 }
823 tim 320 /* select second stuntdouble set (if sele2 is not set, use script from sele1). */
824     else if (strcmp (long_options[option_index].name, "sele2") == 0)
825 tim 876 {
826 gezelter 1629
827    
828     if (update_arg( (void *)&(args_info->sele2_arg),
829     &(args_info->sele2_orig), &(args_info->sele2_given),
830     &(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
831     check_ambiguity, override, 0, 0,
832     "sele2", '-',
833     additional_error))
834     goto failure;
835    
836 tim 876 }
837     /* Lengendre Polynomial Order. */
838     else if (strcmp (long_options[option_index].name, "order") == 0)
839     {
840 gezelter 1629
841    
842     if (update_arg( (void *)&(args_info->order_arg),
843     &(args_info->order_orig), &(args_info->order_given),
844     &(local_args_info.order_given), optarg, 0, 0, ARG_INT,
845     check_ambiguity, override, 0, 0,
846     "order", '-',
847     additional_error))
848     goto failure;
849    
850 chuckv 1098 }
851     /* Radial rmsd. */
852     else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
853     {
854 gezelter 1629
855 chuckv 1098 if (args_info->dynamicProps_group_counter && override)
856     reset_group_dynamicProps (args_info);
857     args_info->dynamicProps_group_counter += 1;
858 gezelter 1629
859     if (update_arg( 0 ,
860     0 , &(args_info->r_rcorr_given),
861     &(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
862     check_ambiguity, override, 0, 0,
863     "r_rcorr", '-',
864     additional_error))
865     goto failure;
866    
867 tim 876 }
868 chuckv 1112 /* Angular rmsd. */
869     else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
870     {
871 gezelter 1629
872 chuckv 1112 if (args_info->dynamicProps_group_counter && override)
873     reset_group_dynamicProps (args_info);
874     args_info->dynamicProps_group_counter += 1;
875 gezelter 1629
876     if (update_arg( 0 ,
877     0 , &(args_info->thetacorr_given),
878     &(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
879     check_ambiguity, override, 0, 0,
880     "thetacorr", '-',
881     additional_error))
882     goto failure;
883    
884 chuckv 1112 }
885 xsun 1183 /* Directional rmsd for particles with unit vectors. */
886     else if (strcmp (long_options[option_index].name, "drcorr") == 0)
887     {
888 gezelter 1629
889 xsun 1183 if (args_info->dynamicProps_group_counter && override)
890     reset_group_dynamicProps (args_info);
891     args_info->dynamicProps_group_counter += 1;
892 gezelter 1629
893     if (update_arg( 0 ,
894     0 , &(args_info->drcorr_given),
895     &(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
896     check_ambiguity, override, 0, 0,
897     "drcorr", '-',
898     additional_error))
899     goto failure;
900    
901 xsun 1183 }
902 chuckv 1245 /* Helfand moment for thermal conductvity. */
903     else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
904     {
905 gezelter 1629
906 chuckv 1245 if (args_info->dynamicProps_group_counter && override)
907     reset_group_dynamicProps (args_info);
908     args_info->dynamicProps_group_counter += 1;
909 gezelter 1629
910     if (update_arg( 0 ,
911     0 , &(args_info->helfandEcorr_given),
912     &(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
913     check_ambiguity, override, 0, 0,
914     "helfandEcorr", '-',
915     additional_error))
916     goto failure;
917    
918 chuckv 1245 }
919 gezelter 1629 /* Stress tensor correlation function. */
920     else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
921     {
922 tim 876
923 gezelter 1629 if (args_info->dynamicProps_group_counter && override)
924     reset_group_dynamicProps (args_info);
925     args_info->dynamicProps_group_counter += 1;
926    
927     if (update_arg( 0 ,
928     0 , &(args_info->stresscorr_given),
929     &(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
930     check_ambiguity, override, 0, 0,
931     "stresscorr", '-',
932     additional_error))
933     goto failure;
934    
935     }
936    
937 chuckv 1098 break;
938 tim 320 case '?': /* Invalid option. */
939     /* `getopt_long' already printed an error message. */
940 chuckv 1098 goto failure;
941 tim 320
942     default: /* bug: option not considered. */
943 chuckv 1098 fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
944 tim 320 abort ();
945     } /* switch */
946     } /* while */
947    
948 chuckv 1098 if (args_info->dynamicProps_group_counter > 1)
949 tim 320 {
950 gezelter 1629 fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
951 chuckv 1098 error = 1;
952 tim 320 }
953    
954    
955 chuckv 1098
956     if (check_required)
957 tim 320 {
958 chuckv 1098 error += cmdline_parser_required2 (args_info, argv[0], additional_error);
959 tim 320 }
960    
961 chuckv 1098 cmdline_parser_release (&local_args_info);
962    
963     if ( error )
964     return (EXIT_FAILURE);
965    
966 gezelter 1629 if (optind < argc)
967     {
968     int i = 0 ;
969     int found_prog_name = 0;
970     /* whether program name, i.e., argv[0], is in the remaining args
971     (this may happen with some implementations of getopt,
972     but surely not with the one included by gengetopt) */
973    
974     i = optind;
975     while (i < argc)
976     if (argv[i++] == argv[0]) {
977     found_prog_name = 1;
978     break;
979     }
980     i = 0;
981    
982     args_info->inputs_num = argc - optind - found_prog_name;
983     args_info->inputs =
984     (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
985     while (optind < argc)
986     if (argv[optind++] != argv[0])
987     args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
988     }
989    
990 tim 320 return 0;
991 chuckv 1098
992     failure:
993    
994     cmdline_parser_release (&local_args_info);
995     return (EXIT_FAILURE);
996 tim 320 }

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