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gezelter |
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!! |
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!! Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
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!! |
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!! The University of Notre Dame grants you ("Licensee") a |
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!! non-exclusive, royalty free, license to use, modify and |
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!! redistribute this software in source and binary code form, provided |
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!! that the following conditions are met: |
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!! |
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!! 1. Acknowledgement of the program authors must be made in any |
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!! publication of scientific results based in part on use of the |
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!! program. An acceptable form of acknowledgement is citation of |
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!! the article in which the program was described (Matthew |
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!! A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
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!! J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
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!! Parallel Simulation Engine for Molecular Dynamics," |
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!! J. Comput. Chem. 26, pp. 252-271 (2005)) |
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!! |
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!! 2. Redistributions of source code must retain the above copyright |
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!! notice, this list of conditions and the following disclaimer. |
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!! |
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!! 3. Redistributions in binary form must reproduce the above copyright |
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!! notice, this list of conditions and the following disclaimer in the |
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!! documentation and/or other materials provided with the |
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!! distribution. |
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!! |
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!! This software is provided "AS IS," without a warranty of any |
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!! kind. All express or implied conditions, representations and |
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!! warranties, including any implied warranty of merchantability, |
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!! fitness for a particular purpose or non-infringement, are hereby |
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!! excluded. The University of Notre Dame and its licensors shall not |
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!! be liable for any damages suffered by licensee as a result of |
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!! using, modifying or distributing the software or its |
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!! derivatives. In no event will the University of Notre Dame or its |
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!! licensors be liable for any lost revenue, profit or data, or for |
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!! direct, indirect, special, consequential, incidental or punitive |
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!! damages, however caused and regardless of the theory of liability, |
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!! arising out of the use of or inability to use software, even if the |
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!! University of Notre Dame has been advised of the possibility of |
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!! such damages. |
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!! |
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gezelter |
117 |
!! doForces.F90 |
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!! module doForces |
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!! Calculates Long Range forces. |
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!! @author Charles F. Vardeman II |
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!! @author Matthew Meineke |
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chrisfen |
695 |
!! @version $Id: doForces.F90,v 1.62 2005-10-23 21:08:02 chrisfen Exp $, $Date: 2005-10-23 21:08:02 $, $Name: not supported by cvs2svn $, $Revision: 1.62 $ |
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gezelter |
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gezelter |
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gezelter |
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module doForces |
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use force_globals |
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use simulation |
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use definitions |
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use atype_module |
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use switcheroo |
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use neighborLists |
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use lj |
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gezelter |
246 |
use sticky |
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gezelter |
401 |
use electrostatic_module |
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gezelter |
676 |
use gayberne |
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chrisfen |
143 |
use shapes |
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gezelter |
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use vector_class |
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use eam |
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use status |
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#ifdef IS_MPI |
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use mpiSimulation |
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#endif |
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implicit none |
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PRIVATE |
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#define __FORTRAN90 |
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#include "UseTheForce/fSwitchingFunction.h" |
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gezelter |
574 |
#include "UseTheForce/fCutoffPolicy.h" |
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gezelter |
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#include "UseTheForce/DarkSide/fInteractionMap.h" |
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chrisfen |
611 |
#include "UseTheForce/DarkSide/fElectrostaticSummationMethod.h" |
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gezelter |
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|
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gezelter |
574 |
|
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gezelter |
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INTEGER, PARAMETER:: PREPAIR_LOOP = 1 |
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INTEGER, PARAMETER:: PAIR_LOOP = 2 |
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logical, save :: haveNeighborList = .false. |
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logical, save :: haveSIMvariables = .false. |
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logical, save :: haveSaneForceField = .false. |
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gezelter |
571 |
logical, save :: haveInteractionHash = .false. |
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logical, save :: haveGtypeCutoffMap = .false. |
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chrisfen |
618 |
logical, save :: haveDefaultCutoffs = .false. |
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gezelter |
581 |
logical, save :: haveRlist = .false. |
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chrisfen |
532 |
|
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gezelter |
141 |
logical, save :: FF_uses_DirectionalAtoms |
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gezelter |
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logical, save :: FF_uses_Dipoles |
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gezelter |
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logical, save :: FF_uses_GayBerne |
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logical, save :: FF_uses_EAM |
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logical, save :: SIM_uses_DirectionalAtoms |
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logical, save :: SIM_uses_EAM |
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gezelter |
117 |
logical, save :: SIM_requires_postpair_calc |
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logical, save :: SIM_requires_prepair_calc |
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logical, save :: SIM_uses_PBC |
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chrisfen |
607 |
integer, save :: electrostaticSummationMethod |
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chrisfen |
580 |
|
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gezelter |
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public :: init_FF |
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gezelter |
574 |
public :: setDefaultCutoffs |
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gezelter |
117 |
public :: do_force_loop |
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gezelter |
571 |
public :: createInteractionHash |
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public :: createGtypeCutoffMap |
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chrisfen |
578 |
public :: getStickyCut |
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public :: getStickyPowerCut |
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public :: getGayBerneCut |
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public :: getEAMCut |
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public :: getShapeCut |
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gezelter |
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#ifdef PROFILE |
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public :: getforcetime |
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real, save :: forceTime = 0 |
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real :: forceTimeInitial, forceTimeFinal |
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integer :: nLoops |
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#endif |
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chuckv |
561 |
|
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gezelter |
571 |
!! Variables for cutoff mapping and interaction mapping |
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! Bit hash to determine pair-pair interactions. |
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integer, dimension(:,:), allocatable :: InteractionHash |
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real(kind=dp), dimension(:), allocatable :: atypeMaxCutoff |
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chuckv |
651 |
real(kind=dp), dimension(:), allocatable, target :: groupMaxCutoffRow |
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real(kind=dp), dimension(:), pointer :: groupMaxCutoffCol |
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integer, dimension(:), allocatable, target :: groupToGtypeRow |
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integer, dimension(:), pointer :: groupToGtypeCol => null() |
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real(kind=dp), dimension(:), allocatable,target :: gtypeMaxCutoffRow |
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real(kind=dp), dimension(:), pointer :: gtypeMaxCutoffCol |
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gezelter |
571 |
type ::gtypeCutoffs |
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real(kind=dp) :: rcut |
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real(kind=dp) :: rcutsq |
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real(kind=dp) :: rlistsq |
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end type gtypeCutoffs |
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type(gtypeCutoffs), dimension(:,:), allocatable :: gtypeCutoffMap |
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gezelter |
574 |
|
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integer, save :: cutoffPolicy = TRADITIONAL_CUTOFF_POLICY |
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real(kind=dp),save :: defaultRcut, defaultRsw, defaultRlist |
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chuckv |
624 |
real(kind=dp),save :: listSkin |
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gezelter |
562 |
|
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gezelter |
117 |
contains |
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gezelter |
571 |
subroutine createInteractionHash(status) |
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chuckv |
561 |
integer :: nAtypes |
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chuckv |
567 |
integer, intent(out) :: status |
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chuckv |
561 |
integer :: i |
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integer :: j |
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gezelter |
571 |
integer :: iHash |
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tim |
568 |
!! Test Types |
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chuckv |
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logical :: i_is_LJ |
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logical :: i_is_Elect |
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logical :: i_is_Sticky |
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logical :: i_is_StickyP |
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logical :: i_is_GB |
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logical :: i_is_EAM |
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logical :: i_is_Shape |
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logical :: j_is_LJ |
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logical :: j_is_Elect |
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logical :: j_is_Sticky |
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logical :: j_is_StickyP |
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logical :: j_is_GB |
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logical :: j_is_EAM |
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logical :: j_is_Shape |
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gezelter |
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real(kind=dp) :: myRcut |
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gezelter |
569 |
status = 0 |
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chuckv |
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if (.not. associated(atypes)) then |
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gezelter |
571 |
call handleError("atype", "atypes was not present before call of createInteractionHash!") |
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chuckv |
561 |
status = -1 |
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return |
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endif |
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nAtypes = getSize(atypes) |
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if (nAtypes == 0) then |
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status = -1 |
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return |
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end if |
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chrisfen |
532 |
|
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chuckv |
570 |
if (.not. allocated(InteractionHash)) then |
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allocate(InteractionHash(nAtypes,nAtypes)) |
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chuckv |
655 |
else |
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deallocate(InteractionHash) |
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allocate(InteractionHash(nAtypes,nAtypes)) |
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chuckv |
561 |
endif |
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gezelter |
571 |
|
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if (.not. allocated(atypeMaxCutoff)) then |
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allocate(atypeMaxCutoff(nAtypes)) |
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chuckv |
655 |
else |
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deallocate(atypeMaxCutoff) |
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allocate(atypeMaxCutoff(nAtypes)) |
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gezelter |
571 |
endif |
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chuckv |
561 |
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do i = 1, nAtypes |
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call getElementProperty(atypes, i, "is_LennardJones", i_is_LJ) |
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call getElementProperty(atypes, i, "is_Electrostatic", i_is_Elect) |
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call getElementProperty(atypes, i, "is_Sticky", i_is_Sticky) |
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call getElementProperty(atypes, i, "is_StickyPower", i_is_StickyP) |
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call getElementProperty(atypes, i, "is_GayBerne", i_is_GB) |
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call getElementProperty(atypes, i, "is_EAM", i_is_EAM) |
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call getElementProperty(atypes, i, "is_Shape", i_is_Shape) |
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gezelter |
117 |
|
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chuckv |
561 |
do j = i, nAtypes |
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chrisfen |
532 |
|
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chuckv |
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iHash = 0 |
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myRcut = 0.0_dp |
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gezelter |
117 |
|
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chuckv |
561 |
call getElementProperty(atypes, j, "is_LennardJones", j_is_LJ) |
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call getElementProperty(atypes, j, "is_Electrostatic", j_is_Elect) |
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call getElementProperty(atypes, j, "is_Sticky", j_is_Sticky) |
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call getElementProperty(atypes, j, "is_StickyPower", j_is_StickyP) |
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call getElementProperty(atypes, j, "is_GayBerne", j_is_GB) |
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call getElementProperty(atypes, j, "is_EAM", j_is_EAM) |
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call getElementProperty(atypes, j, "is_Shape", j_is_Shape) |
220 |
gezelter |
117 |
|
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chuckv |
561 |
if (i_is_LJ .and. j_is_LJ) then |
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gezelter |
562 |
iHash = ior(iHash, LJ_PAIR) |
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endif |
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if (i_is_Elect .and. j_is_Elect) then |
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iHash = ior(iHash, ELECTROSTATIC_PAIR) |
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endif |
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229 |
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if (i_is_Sticky .and. j_is_Sticky) then |
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iHash = ior(iHash, STICKY_PAIR) |
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endif |
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chuckv |
561 |
|
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gezelter |
562 |
if (i_is_StickyP .and. j_is_StickyP) then |
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iHash = ior(iHash, STICKYPOWER_PAIR) |
235 |
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endif |
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chuckv |
561 |
|
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gezelter |
562 |
if (i_is_EAM .and. j_is_EAM) then |
238 |
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iHash = ior(iHash, EAM_PAIR) |
239 |
chuckv |
561 |
endif |
240 |
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241 |
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if (i_is_GB .and. j_is_GB) iHash = ior(iHash, GAYBERNE_PAIR) |
242 |
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if (i_is_GB .and. j_is_LJ) iHash = ior(iHash, GAYBERNE_LJ) |
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if (i_is_LJ .and. j_is_GB) iHash = ior(iHash, GAYBERNE_LJ) |
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245 |
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if (i_is_Shape .and. j_is_Shape) iHash = ior(iHash, SHAPE_PAIR) |
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if (i_is_Shape .and. j_is_LJ) iHash = ior(iHash, SHAPE_LJ) |
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if (i_is_LJ .and. j_is_Shape) iHash = ior(iHash, SHAPE_LJ) |
248 |
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249 |
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250 |
chuckv |
570 |
InteractionHash(i,j) = iHash |
251 |
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InteractionHash(j,i) = iHash |
252 |
chuckv |
561 |
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253 |
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end do |
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255 |
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end do |
256 |
tim |
568 |
|
257 |
gezelter |
571 |
haveInteractionHash = .true. |
258 |
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end subroutine createInteractionHash |
259 |
chuckv |
561 |
|
260 |
gezelter |
576 |
subroutine createGtypeCutoffMap(stat) |
261 |
gezelter |
569 |
|
262 |
gezelter |
576 |
integer, intent(out), optional :: stat |
263 |
gezelter |
574 |
logical :: i_is_LJ |
264 |
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logical :: i_is_Elect |
265 |
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logical :: i_is_Sticky |
266 |
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logical :: i_is_StickyP |
267 |
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logical :: i_is_GB |
268 |
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logical :: i_is_EAM |
269 |
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logical :: i_is_Shape |
270 |
gezelter |
587 |
logical :: GtypeFound |
271 |
chuckv |
561 |
|
272 |
gezelter |
576 |
integer :: myStatus, nAtypes, i, j, istart, iend, jstart, jend |
273 |
chuckv |
652 |
integer :: n_in_i, me_i, ia, g, atom1, ja, n_in_j,me_j |
274 |
chuckv |
589 |
integer :: nGroupsInRow |
275 |
chuckv |
651 |
integer :: nGroupsInCol |
276 |
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integer :: nGroupTypesRow,nGroupTypesCol |
277 |
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real(kind=dp):: thisSigma, bigSigma, thisRcut, tradRcut, tol, skin |
278 |
gezelter |
576 |
real(kind=dp) :: biggestAtypeCutoff |
279 |
gezelter |
571 |
|
280 |
chuckv |
567 |
stat = 0 |
281 |
gezelter |
571 |
if (.not. haveInteractionHash) then |
282 |
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call createInteractionHash(myStatus) |
283 |
chuckv |
567 |
if (myStatus .ne. 0) then |
284 |
gezelter |
571 |
write(default_error, *) 'createInteractionHash failed in doForces!' |
285 |
chuckv |
567 |
stat = -1 |
286 |
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return |
287 |
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endif |
288 |
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endif |
289 |
chuckv |
589 |
#ifdef IS_MPI |
290 |
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nGroupsInRow = getNgroupsInRow(plan_group_row) |
291 |
chuckv |
651 |
nGroupsInCol = getNgroupsInCol(plan_group_col) |
292 |
chuckv |
589 |
#endif |
293 |
chuckv |
563 |
nAtypes = getSize(atypes) |
294 |
chuckv |
599 |
! Set all of the initial cutoffs to zero. |
295 |
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atypeMaxCutoff = 0.0_dp |
296 |
gezelter |
571 |
do i = 1, nAtypes |
297 |
gezelter |
582 |
if (SimHasAtype(i)) then |
298 |
gezelter |
575 |
call getElementProperty(atypes, i, "is_LennardJones", i_is_LJ) |
299 |
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call getElementProperty(atypes, i, "is_Electrostatic", i_is_Elect) |
300 |
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call getElementProperty(atypes, i, "is_Sticky", i_is_Sticky) |
301 |
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call getElementProperty(atypes, i, "is_StickyPower", i_is_StickyP) |
302 |
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call getElementProperty(atypes, i, "is_GayBerne", i_is_GB) |
303 |
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call getElementProperty(atypes, i, "is_EAM", i_is_EAM) |
304 |
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call getElementProperty(atypes, i, "is_Shape", i_is_Shape) |
305 |
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|
306 |
chuckv |
599 |
|
307 |
chrisfen |
618 |
if (haveDefaultCutoffs) then |
308 |
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atypeMaxCutoff(i) = defaultRcut |
309 |
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else |
310 |
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if (i_is_LJ) then |
311 |
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thisRcut = getSigma(i) * 2.5_dp |
312 |
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if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
313 |
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endif |
314 |
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if (i_is_Elect) then |
315 |
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thisRcut = defaultRcut |
316 |
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if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
317 |
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endif |
318 |
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if (i_is_Sticky) then |
319 |
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thisRcut = getStickyCut(i) |
320 |
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if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
321 |
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endif |
322 |
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if (i_is_StickyP) then |
323 |
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thisRcut = getStickyPowerCut(i) |
324 |
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if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
325 |
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endif |
326 |
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if (i_is_GB) then |
327 |
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thisRcut = getGayBerneCut(i) |
328 |
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if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
329 |
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endif |
330 |
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if (i_is_EAM) then |
331 |
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thisRcut = getEAMCut(i) |
332 |
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if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
333 |
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endif |
334 |
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if (i_is_Shape) then |
335 |
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thisRcut = getShapeCut(i) |
336 |
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if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
337 |
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endif |
338 |
gezelter |
575 |
endif |
339 |
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|
340 |
chrisfen |
618 |
|
341 |
gezelter |
575 |
if (atypeMaxCutoff(i).gt.biggestAtypeCutoff) then |
342 |
|
|
biggestAtypeCutoff = atypeMaxCutoff(i) |
343 |
|
|
endif |
344 |
chrisfen |
618 |
|
345 |
gezelter |
574 |
endif |
346 |
gezelter |
575 |
enddo |
347 |
gezelter |
581 |
|
348 |
chuckv |
651 |
|
349 |
gezelter |
581 |
|
350 |
gezelter |
575 |
istart = 1 |
351 |
chuckv |
651 |
jstart = 1 |
352 |
gezelter |
575 |
#ifdef IS_MPI |
353 |
|
|
iend = nGroupsInRow |
354 |
chuckv |
651 |
jend = nGroupsInCol |
355 |
gezelter |
575 |
#else |
356 |
|
|
iend = nGroups |
357 |
chuckv |
651 |
jend = nGroups |
358 |
gezelter |
575 |
#endif |
359 |
gezelter |
582 |
|
360 |
gezelter |
581 |
!! allocate the groupToGtype and gtypeMaxCutoff here. |
361 |
chuckv |
651 |
if(.not.allocated(groupToGtypeRow)) then |
362 |
|
|
! allocate(groupToGtype(iend)) |
363 |
|
|
allocate(groupToGtypeRow(iend)) |
364 |
|
|
else |
365 |
|
|
deallocate(groupToGtypeRow) |
366 |
|
|
allocate(groupToGtypeRow(iend)) |
367 |
chuckv |
583 |
endif |
368 |
chuckv |
651 |
if(.not.allocated(groupMaxCutoffRow)) then |
369 |
|
|
allocate(groupMaxCutoffRow(iend)) |
370 |
|
|
else |
371 |
|
|
deallocate(groupMaxCutoffRow) |
372 |
|
|
allocate(groupMaxCutoffRow(iend)) |
373 |
|
|
end if |
374 |
|
|
|
375 |
|
|
if(.not.allocated(gtypeMaxCutoffRow)) then |
376 |
|
|
allocate(gtypeMaxCutoffRow(iend)) |
377 |
|
|
else |
378 |
|
|
deallocate(gtypeMaxCutoffRow) |
379 |
|
|
allocate(gtypeMaxCutoffRow(iend)) |
380 |
|
|
endif |
381 |
|
|
|
382 |
|
|
|
383 |
|
|
#ifdef IS_MPI |
384 |
|
|
! We only allocate new storage if we are in MPI because Ncol /= Nrow |
385 |
chuckv |
652 |
if(.not.associated(groupToGtypeCol)) then |
386 |
chuckv |
651 |
allocate(groupToGtypeCol(jend)) |
387 |
|
|
else |
388 |
|
|
deallocate(groupToGtypeCol) |
389 |
|
|
allocate(groupToGtypeCol(jend)) |
390 |
|
|
end if |
391 |
|
|
|
392 |
chuckv |
652 |
if(.not.associated(groupToGtypeCol)) then |
393 |
chuckv |
651 |
allocate(groupToGtypeCol(jend)) |
394 |
|
|
else |
395 |
|
|
deallocate(groupToGtypeCol) |
396 |
|
|
allocate(groupToGtypeCol(jend)) |
397 |
|
|
end if |
398 |
chuckv |
652 |
if(.not.associated(gtypeMaxCutoffCol)) then |
399 |
chuckv |
651 |
allocate(gtypeMaxCutoffCol(jend)) |
400 |
|
|
else |
401 |
|
|
deallocate(gtypeMaxCutoffCol) |
402 |
|
|
allocate(gtypeMaxCutoffCol(jend)) |
403 |
|
|
end if |
404 |
|
|
|
405 |
|
|
groupMaxCutoffCol = 0.0_dp |
406 |
|
|
gtypeMaxCutoffCol = 0.0_dp |
407 |
|
|
|
408 |
|
|
#endif |
409 |
|
|
groupMaxCutoffRow = 0.0_dp |
410 |
|
|
gtypeMaxCutoffRow = 0.0_dp |
411 |
|
|
|
412 |
|
|
|
413 |
gezelter |
582 |
!! first we do a single loop over the cutoff groups to find the |
414 |
|
|
!! largest cutoff for any atypes present in this group. We also |
415 |
|
|
!! create gtypes at this point. |
416 |
|
|
|
417 |
gezelter |
581 |
tol = 1.0d-6 |
418 |
chuckv |
651 |
nGroupTypesRow = 0 |
419 |
|
|
|
420 |
gezelter |
581 |
do i = istart, iend |
421 |
gezelter |
575 |
n_in_i = groupStartRow(i+1) - groupStartRow(i) |
422 |
chuckv |
651 |
groupMaxCutoffRow(i) = 0.0_dp |
423 |
gezelter |
581 |
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
424 |
|
|
atom1 = groupListRow(ia) |
425 |
gezelter |
575 |
#ifdef IS_MPI |
426 |
gezelter |
581 |
me_i = atid_row(atom1) |
427 |
gezelter |
575 |
#else |
428 |
gezelter |
581 |
me_i = atid(atom1) |
429 |
|
|
#endif |
430 |
chuckv |
651 |
if (atypeMaxCutoff(me_i).gt.groupMaxCutoffRow(i)) then |
431 |
|
|
groupMaxCutoffRow(i)=atypeMaxCutoff(me_i) |
432 |
gezelter |
587 |
endif |
433 |
gezelter |
581 |
enddo |
434 |
gezelter |
587 |
|
435 |
chuckv |
651 |
if (nGroupTypesRow.eq.0) then |
436 |
|
|
nGroupTypesRow = nGroupTypesRow + 1 |
437 |
|
|
gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i) |
438 |
|
|
groupToGtypeRow(i) = nGroupTypesRow |
439 |
gezelter |
581 |
else |
440 |
gezelter |
587 |
GtypeFound = .false. |
441 |
chuckv |
651 |
do g = 1, nGroupTypesRow |
442 |
|
|
if ( abs(groupMaxCutoffRow(i) - gtypeMaxCutoffRow(g)).lt.tol) then |
443 |
|
|
groupToGtypeRow(i) = g |
444 |
gezelter |
587 |
GtypeFound = .true. |
445 |
gezelter |
581 |
endif |
446 |
|
|
enddo |
447 |
gezelter |
587 |
if (.not.GtypeFound) then |
448 |
chuckv |
651 |
nGroupTypesRow = nGroupTypesRow + 1 |
449 |
|
|
gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i) |
450 |
|
|
groupToGtypeRow(i) = nGroupTypesRow |
451 |
gezelter |
587 |
endif |
452 |
gezelter |
581 |
endif |
453 |
gezelter |
587 |
enddo |
454 |
|
|
|
455 |
chuckv |
651 |
#ifdef IS_MPI |
456 |
|
|
do j = jstart, jend |
457 |
|
|
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
458 |
|
|
groupMaxCutoffCol(j) = 0.0_dp |
459 |
|
|
do ja = groupStartCol(j), groupStartCol(j+1)-1 |
460 |
|
|
atom1 = groupListCol(ja) |
461 |
|
|
|
462 |
|
|
me_j = atid_col(atom1) |
463 |
|
|
|
464 |
|
|
if (atypeMaxCutoff(me_j).gt.groupMaxCutoffCol(j)) then |
465 |
|
|
groupMaxCutoffCol(j)=atypeMaxCutoff(me_j) |
466 |
|
|
endif |
467 |
|
|
enddo |
468 |
|
|
|
469 |
|
|
if (nGroupTypesCol.eq.0) then |
470 |
|
|
nGroupTypesCol = nGroupTypesCol + 1 |
471 |
|
|
gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j) |
472 |
|
|
groupToGtypeCol(j) = nGroupTypesCol |
473 |
|
|
else |
474 |
|
|
GtypeFound = .false. |
475 |
|
|
do g = 1, nGroupTypesCol |
476 |
|
|
if ( abs(groupMaxCutoffCol(j) - gtypeMaxCutoffCol(g)).lt.tol) then |
477 |
|
|
groupToGtypeCol(j) = g |
478 |
|
|
GtypeFound = .true. |
479 |
|
|
endif |
480 |
|
|
enddo |
481 |
|
|
if (.not.GtypeFound) then |
482 |
|
|
nGroupTypesCol = nGroupTypesCol + 1 |
483 |
|
|
gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j) |
484 |
|
|
groupToGtypeCol(j) = nGroupTypesCol |
485 |
|
|
endif |
486 |
|
|
endif |
487 |
|
|
enddo |
488 |
|
|
|
489 |
|
|
#else |
490 |
|
|
! Set pointers to information we just found |
491 |
|
|
nGroupTypesCol = nGroupTypesRow |
492 |
|
|
groupToGtypeCol => groupToGtypeRow |
493 |
|
|
gtypeMaxCutoffCol => gtypeMaxCutoffRow |
494 |
|
|
groupMaxCutoffCol => groupMaxCutoffRow |
495 |
|
|
#endif |
496 |
|
|
|
497 |
|
|
|
498 |
|
|
|
499 |
|
|
|
500 |
|
|
|
501 |
gezelter |
581 |
!! allocate the gtypeCutoffMap here. |
502 |
chuckv |
651 |
allocate(gtypeCutoffMap(nGroupTypesRow,nGroupTypesCol)) |
503 |
gezelter |
581 |
!! then we do a double loop over all the group TYPES to find the cutoff |
504 |
|
|
!! map between groups of two types |
505 |
chuckv |
651 |
tradRcut = max(maxval(gtypeMaxCutoffRow),maxval(gtypeMaxCutoffCol)) |
506 |
|
|
|
507 |
|
|
do i = 1, nGroupTypesRow |
508 |
|
|
do j = 1, nGroupTypesCol |
509 |
gezelter |
576 |
|
510 |
gezelter |
581 |
select case(cutoffPolicy) |
511 |
gezelter |
582 |
case(TRADITIONAL_CUTOFF_POLICY) |
512 |
chuckv |
651 |
thisRcut = tradRcut |
513 |
gezelter |
582 |
case(MIX_CUTOFF_POLICY) |
514 |
chuckv |
651 |
thisRcut = 0.5_dp * (gtypeMaxCutoffRow(i) + gtypeMaxCutoffCol(j)) |
515 |
gezelter |
582 |
case(MAX_CUTOFF_POLICY) |
516 |
chuckv |
651 |
thisRcut = max(gtypeMaxCutoffRow(i), gtypeMaxCutoffCol(j)) |
517 |
gezelter |
582 |
case default |
518 |
|
|
call handleError("createGtypeCutoffMap", "Unknown Cutoff Policy") |
519 |
|
|
return |
520 |
|
|
end select |
521 |
|
|
gtypeCutoffMap(i,j)%rcut = thisRcut |
522 |
|
|
gtypeCutoffMap(i,j)%rcutsq = thisRcut*thisRcut |
523 |
|
|
skin = defaultRlist - defaultRcut |
524 |
chuckv |
624 |
listSkin = skin ! set neighbor list skin thickness |
525 |
gezelter |
582 |
gtypeCutoffMap(i,j)%rlistsq = (thisRcut + skin)**2 |
526 |
gezelter |
585 |
|
527 |
chrisfen |
618 |
! sanity check |
528 |
|
|
|
529 |
|
|
if (haveDefaultCutoffs) then |
530 |
|
|
if (abs(gtypeCutoffMap(i,j)%rcut - defaultRcut).gt.0.0001) then |
531 |
|
|
call handleError("createGtypeCutoffMap", "user-specified rCut does not match computed group Cutoff") |
532 |
|
|
endif |
533 |
|
|
endif |
534 |
gezelter |
581 |
enddo |
535 |
|
|
enddo |
536 |
chuckv |
651 |
if(allocated(gtypeMaxCutoffRow)) deallocate(gtypeMaxCutoffRow) |
537 |
|
|
if(allocated(groupMaxCutoffRow)) deallocate(groupMaxCutoffRow) |
538 |
|
|
if(allocated(atypeMaxCutoff)) deallocate(atypeMaxCutoff) |
539 |
|
|
#ifdef IS_MPI |
540 |
|
|
if(associated(groupMaxCutoffCol)) deallocate(groupMaxCutoffCol) |
541 |
|
|
if(associated(gtypeMaxCutoffCol)) deallocate(gtypeMaxCutoffCol) |
542 |
|
|
#endif |
543 |
|
|
groupMaxCutoffCol => null() |
544 |
|
|
gtypeMaxCutoffCol => null() |
545 |
|
|
|
546 |
gezelter |
581 |
haveGtypeCutoffMap = .true. |
547 |
chrisfen |
596 |
end subroutine createGtypeCutoffMap |
548 |
chrisfen |
578 |
|
549 |
chrisfen |
596 |
subroutine setDefaultCutoffs(defRcut, defRsw, defRlist, cutPolicy) |
550 |
|
|
real(kind=dp),intent(in) :: defRcut, defRsw, defRlist |
551 |
gezelter |
574 |
integer, intent(in) :: cutPolicy |
552 |
chrisfen |
596 |
|
553 |
|
|
defaultRcut = defRcut |
554 |
|
|
defaultRsw = defRsw |
555 |
|
|
defaultRlist = defRlist |
556 |
gezelter |
574 |
cutoffPolicy = cutPolicy |
557 |
chrisfen |
618 |
|
558 |
|
|
haveDefaultCutoffs = .true. |
559 |
chrisfen |
596 |
end subroutine setDefaultCutoffs |
560 |
|
|
|
561 |
|
|
subroutine setCutoffPolicy(cutPolicy) |
562 |
|
|
|
563 |
|
|
integer, intent(in) :: cutPolicy |
564 |
|
|
cutoffPolicy = cutPolicy |
565 |
gezelter |
574 |
call createGtypeCutoffMap() |
566 |
gezelter |
576 |
end subroutine setCutoffPolicy |
567 |
gezelter |
574 |
|
568 |
|
|
|
569 |
gezelter |
117 |
subroutine setSimVariables() |
570 |
gezelter |
141 |
SIM_uses_DirectionalAtoms = SimUsesDirectionalAtoms() |
571 |
|
|
SIM_uses_EAM = SimUsesEAM() |
572 |
gezelter |
117 |
SIM_requires_postpair_calc = SimRequiresPostpairCalc() |
573 |
|
|
SIM_requires_prepair_calc = SimRequiresPrepairCalc() |
574 |
|
|
SIM_uses_PBC = SimUsesPBC() |
575 |
|
|
|
576 |
|
|
haveSIMvariables = .true. |
577 |
|
|
|
578 |
|
|
return |
579 |
|
|
end subroutine setSimVariables |
580 |
|
|
|
581 |
|
|
subroutine doReadyCheck(error) |
582 |
|
|
integer, intent(out) :: error |
583 |
|
|
|
584 |
|
|
integer :: myStatus |
585 |
|
|
|
586 |
|
|
error = 0 |
587 |
chrisfen |
532 |
|
588 |
gezelter |
571 |
if (.not. haveInteractionHash) then |
589 |
gezelter |
569 |
myStatus = 0 |
590 |
gezelter |
571 |
call createInteractionHash(myStatus) |
591 |
gezelter |
117 |
if (myStatus .ne. 0) then |
592 |
gezelter |
571 |
write(default_error, *) 'createInteractionHash failed in doForces!' |
593 |
gezelter |
117 |
error = -1 |
594 |
|
|
return |
595 |
|
|
endif |
596 |
|
|
endif |
597 |
|
|
|
598 |
gezelter |
571 |
if (.not. haveGtypeCutoffMap) then |
599 |
|
|
myStatus = 0 |
600 |
|
|
call createGtypeCutoffMap(myStatus) |
601 |
|
|
if (myStatus .ne. 0) then |
602 |
|
|
write(default_error, *) 'createGtypeCutoffMap failed in doForces!' |
603 |
|
|
error = -1 |
604 |
|
|
return |
605 |
|
|
endif |
606 |
|
|
endif |
607 |
|
|
|
608 |
gezelter |
117 |
if (.not. haveSIMvariables) then |
609 |
|
|
call setSimVariables() |
610 |
|
|
endif |
611 |
|
|
|
612 |
chuckv |
583 |
! if (.not. haveRlist) then |
613 |
|
|
! write(default_error, *) 'rList has not been set in doForces!' |
614 |
|
|
! error = -1 |
615 |
|
|
! return |
616 |
|
|
! endif |
617 |
gezelter |
117 |
|
618 |
|
|
if (.not. haveNeighborList) then |
619 |
|
|
write(default_error, *) 'neighbor list has not been initialized in doForces!' |
620 |
|
|
error = -1 |
621 |
|
|
return |
622 |
|
|
end if |
623 |
|
|
|
624 |
|
|
if (.not. haveSaneForceField) then |
625 |
|
|
write(default_error, *) 'Force Field is not sane in doForces!' |
626 |
|
|
error = -1 |
627 |
|
|
return |
628 |
|
|
end if |
629 |
|
|
|
630 |
|
|
#ifdef IS_MPI |
631 |
|
|
if (.not. isMPISimSet()) then |
632 |
|
|
write(default_error,*) "ERROR: mpiSimulation has not been initialized!" |
633 |
|
|
error = -1 |
634 |
|
|
return |
635 |
|
|
endif |
636 |
|
|
#endif |
637 |
|
|
return |
638 |
|
|
end subroutine doReadyCheck |
639 |
|
|
|
640 |
chrisfen |
532 |
|
641 |
chrisfen |
610 |
subroutine init_FF(thisESM, thisStat) |
642 |
gezelter |
117 |
|
643 |
chrisfen |
607 |
integer, intent(in) :: thisESM |
644 |
gezelter |
117 |
integer, intent(out) :: thisStat |
645 |
|
|
integer :: my_status, nMatches |
646 |
|
|
integer, pointer :: MatchList(:) => null() |
647 |
|
|
real(kind=dp) :: rcut, rrf, rt, dielect |
648 |
|
|
|
649 |
|
|
!! assume things are copacetic, unless they aren't |
650 |
|
|
thisStat = 0 |
651 |
|
|
|
652 |
chrisfen |
607 |
electrostaticSummationMethod = thisESM |
653 |
chrisfen |
532 |
|
654 |
gezelter |
117 |
!! init_FF is called *after* all of the atom types have been |
655 |
|
|
!! defined in atype_module using the new_atype subroutine. |
656 |
|
|
!! |
657 |
|
|
!! this will scan through the known atypes and figure out what |
658 |
|
|
!! interactions are used by the force field. |
659 |
chrisfen |
532 |
|
660 |
gezelter |
141 |
FF_uses_DirectionalAtoms = .false. |
661 |
|
|
FF_uses_Dipoles = .false. |
662 |
|
|
FF_uses_GayBerne = .false. |
663 |
gezelter |
117 |
FF_uses_EAM = .false. |
664 |
chrisfen |
532 |
|
665 |
gezelter |
141 |
call getMatchingElementList(atypes, "is_Directional", .true., & |
666 |
|
|
nMatches, MatchList) |
667 |
|
|
if (nMatches .gt. 0) FF_uses_DirectionalAtoms = .true. |
668 |
|
|
|
669 |
|
|
call getMatchingElementList(atypes, "is_Dipole", .true., & |
670 |
|
|
nMatches, MatchList) |
671 |
gezelter |
571 |
if (nMatches .gt. 0) FF_uses_Dipoles = .true. |
672 |
chrisfen |
523 |
|
673 |
gezelter |
141 |
call getMatchingElementList(atypes, "is_GayBerne", .true., & |
674 |
|
|
nMatches, MatchList) |
675 |
gezelter |
571 |
if (nMatches .gt. 0) FF_uses_GayBerne = .true. |
676 |
chrisfen |
532 |
|
677 |
gezelter |
117 |
call getMatchingElementList(atypes, "is_EAM", .true., nMatches, MatchList) |
678 |
|
|
if (nMatches .gt. 0) FF_uses_EAM = .true. |
679 |
chrisfen |
532 |
|
680 |
gezelter |
141 |
|
681 |
gezelter |
117 |
haveSaneForceField = .true. |
682 |
chrisfen |
532 |
|
683 |
gezelter |
117 |
if (FF_uses_EAM) then |
684 |
chrisfen |
532 |
call init_EAM_FF(my_status) |
685 |
gezelter |
117 |
if (my_status /= 0) then |
686 |
|
|
write(default_error, *) "init_EAM_FF returned a bad status" |
687 |
|
|
thisStat = -1 |
688 |
|
|
haveSaneForceField = .false. |
689 |
|
|
return |
690 |
|
|
end if |
691 |
|
|
endif |
692 |
|
|
|
693 |
|
|
if (.not. haveNeighborList) then |
694 |
|
|
!! Create neighbor lists |
695 |
|
|
call expandNeighborList(nLocal, my_status) |
696 |
|
|
if (my_Status /= 0) then |
697 |
|
|
write(default_error,*) "SimSetup: ExpandNeighborList returned error." |
698 |
|
|
thisStat = -1 |
699 |
|
|
return |
700 |
|
|
endif |
701 |
|
|
haveNeighborList = .true. |
702 |
chrisfen |
532 |
endif |
703 |
|
|
|
704 |
gezelter |
117 |
end subroutine init_FF |
705 |
|
|
|
706 |
chrisfen |
532 |
|
707 |
gezelter |
117 |
!! Does force loop over i,j pairs. Calls do_pair to calculates forces. |
708 |
|
|
!-------------------------------------------------------------> |
709 |
gezelter |
246 |
subroutine do_force_loop(q, q_group, A, eFrame, f, t, tau, pot, & |
710 |
gezelter |
117 |
do_pot_c, do_stress_c, error) |
711 |
|
|
!! Position array provided by C, dimensioned by getNlocal |
712 |
|
|
real ( kind = dp ), dimension(3, nLocal) :: q |
713 |
|
|
!! molecular center-of-mass position array |
714 |
|
|
real ( kind = dp ), dimension(3, nGroups) :: q_group |
715 |
|
|
!! Rotation Matrix for each long range particle in simulation. |
716 |
|
|
real( kind = dp), dimension(9, nLocal) :: A |
717 |
|
|
!! Unit vectors for dipoles (lab frame) |
718 |
gezelter |
246 |
real( kind = dp ), dimension(9,nLocal) :: eFrame |
719 |
gezelter |
117 |
!! Force array provided by C, dimensioned by getNlocal |
720 |
|
|
real ( kind = dp ), dimension(3,nLocal) :: f |
721 |
|
|
!! Torsion array provided by C, dimensioned by getNlocal |
722 |
|
|
real( kind = dp ), dimension(3,nLocal) :: t |
723 |
|
|
|
724 |
|
|
!! Stress Tensor |
725 |
|
|
real( kind = dp), dimension(9) :: tau |
726 |
gezelter |
662 |
real ( kind = dp ),dimension(LR_POT_TYPES) :: pot |
727 |
gezelter |
117 |
logical ( kind = 2) :: do_pot_c, do_stress_c |
728 |
|
|
logical :: do_pot |
729 |
|
|
logical :: do_stress |
730 |
|
|
logical :: in_switching_region |
731 |
|
|
#ifdef IS_MPI |
732 |
gezelter |
662 |
real( kind = DP ), dimension(LR_POT_TYPES) :: pot_local |
733 |
gezelter |
117 |
integer :: nAtomsInRow |
734 |
|
|
integer :: nAtomsInCol |
735 |
|
|
integer :: nprocs |
736 |
|
|
integer :: nGroupsInRow |
737 |
|
|
integer :: nGroupsInCol |
738 |
|
|
#endif |
739 |
|
|
integer :: natoms |
740 |
|
|
logical :: update_nlist |
741 |
|
|
integer :: i, j, jstart, jend, jnab |
742 |
|
|
integer :: istart, iend |
743 |
|
|
integer :: ia, jb, atom1, atom2 |
744 |
|
|
integer :: nlist |
745 |
|
|
real( kind = DP ) :: ratmsq, rgrpsq, rgrp, vpair, vij |
746 |
|
|
real( kind = DP ) :: sw, dswdr, swderiv, mf |
747 |
|
|
real(kind=dp),dimension(3) :: d_atm, d_grp, fpair, fij |
748 |
|
|
real(kind=dp) :: rfpot, mu_i, virial |
749 |
|
|
integer :: me_i, me_j, n_in_i, n_in_j |
750 |
|
|
logical :: is_dp_i |
751 |
|
|
integer :: neighborListSize |
752 |
|
|
integer :: listerror, error |
753 |
|
|
integer :: localError |
754 |
|
|
integer :: propPack_i, propPack_j |
755 |
|
|
integer :: loopStart, loopEnd, loop |
756 |
gezelter |
571 |
integer :: iHash |
757 |
chrisfen |
695 |
integer :: ig |
758 |
chuckv |
624 |
|
759 |
chrisfen |
532 |
|
760 |
gezelter |
117 |
!! initialize local variables |
761 |
chrisfen |
532 |
|
762 |
gezelter |
117 |
#ifdef IS_MPI |
763 |
|
|
pot_local = 0.0_dp |
764 |
|
|
nAtomsInRow = getNatomsInRow(plan_atom_row) |
765 |
|
|
nAtomsInCol = getNatomsInCol(plan_atom_col) |
766 |
|
|
nGroupsInRow = getNgroupsInRow(plan_group_row) |
767 |
|
|
nGroupsInCol = getNgroupsInCol(plan_group_col) |
768 |
|
|
#else |
769 |
|
|
natoms = nlocal |
770 |
|
|
#endif |
771 |
chrisfen |
532 |
|
772 |
gezelter |
117 |
call doReadyCheck(localError) |
773 |
|
|
if ( localError .ne. 0 ) then |
774 |
|
|
call handleError("do_force_loop", "Not Initialized") |
775 |
|
|
error = -1 |
776 |
|
|
return |
777 |
|
|
end if |
778 |
|
|
call zero_work_arrays() |
779 |
chrisfen |
532 |
|
780 |
gezelter |
117 |
do_pot = do_pot_c |
781 |
|
|
do_stress = do_stress_c |
782 |
chrisfen |
532 |
|
783 |
gezelter |
117 |
! Gather all information needed by all force loops: |
784 |
chrisfen |
532 |
|
785 |
gezelter |
117 |
#ifdef IS_MPI |
786 |
chrisfen |
532 |
|
787 |
gezelter |
117 |
call gather(q, q_Row, plan_atom_row_3d) |
788 |
|
|
call gather(q, q_Col, plan_atom_col_3d) |
789 |
|
|
|
790 |
|
|
call gather(q_group, q_group_Row, plan_group_row_3d) |
791 |
|
|
call gather(q_group, q_group_Col, plan_group_col_3d) |
792 |
chrisfen |
532 |
|
793 |
gezelter |
141 |
if (FF_UsesDirectionalAtoms() .and. SIM_uses_DirectionalAtoms) then |
794 |
gezelter |
246 |
call gather(eFrame, eFrame_Row, plan_atom_row_rotation) |
795 |
|
|
call gather(eFrame, eFrame_Col, plan_atom_col_rotation) |
796 |
chrisfen |
532 |
|
797 |
gezelter |
117 |
call gather(A, A_Row, plan_atom_row_rotation) |
798 |
|
|
call gather(A, A_Col, plan_atom_col_rotation) |
799 |
|
|
endif |
800 |
chrisfen |
532 |
|
801 |
gezelter |
117 |
#endif |
802 |
chrisfen |
532 |
|
803 |
gezelter |
117 |
!! Begin force loop timing: |
804 |
|
|
#ifdef PROFILE |
805 |
|
|
call cpu_time(forceTimeInitial) |
806 |
|
|
nloops = nloops + 1 |
807 |
|
|
#endif |
808 |
chrisfen |
532 |
|
809 |
gezelter |
117 |
loopEnd = PAIR_LOOP |
810 |
|
|
if (FF_RequiresPrepairCalc() .and. SIM_requires_prepair_calc) then |
811 |
|
|
loopStart = PREPAIR_LOOP |
812 |
|
|
else |
813 |
|
|
loopStart = PAIR_LOOP |
814 |
|
|
endif |
815 |
|
|
|
816 |
|
|
do loop = loopStart, loopEnd |
817 |
|
|
|
818 |
|
|
! See if we need to update neighbor lists |
819 |
|
|
! (but only on the first time through): |
820 |
|
|
if (loop .eq. loopStart) then |
821 |
|
|
#ifdef IS_MPI |
822 |
|
|
call checkNeighborList(nGroupsInRow, q_group_row, listSkin, & |
823 |
chrisfen |
532 |
update_nlist) |
824 |
gezelter |
117 |
#else |
825 |
|
|
call checkNeighborList(nGroups, q_group, listSkin, & |
826 |
chrisfen |
532 |
update_nlist) |
827 |
gezelter |
117 |
#endif |
828 |
|
|
endif |
829 |
chrisfen |
532 |
|
830 |
gezelter |
117 |
if (update_nlist) then |
831 |
|
|
!! save current configuration and construct neighbor list |
832 |
|
|
#ifdef IS_MPI |
833 |
|
|
call saveNeighborList(nGroupsInRow, q_group_row) |
834 |
|
|
#else |
835 |
|
|
call saveNeighborList(nGroups, q_group) |
836 |
|
|
#endif |
837 |
|
|
neighborListSize = size(list) |
838 |
|
|
nlist = 0 |
839 |
|
|
endif |
840 |
chrisfen |
532 |
|
841 |
gezelter |
117 |
istart = 1 |
842 |
|
|
#ifdef IS_MPI |
843 |
|
|
iend = nGroupsInRow |
844 |
|
|
#else |
845 |
|
|
iend = nGroups - 1 |
846 |
|
|
#endif |
847 |
|
|
outer: do i = istart, iend |
848 |
|
|
|
849 |
|
|
if (update_nlist) point(i) = nlist + 1 |
850 |
chrisfen |
532 |
|
851 |
gezelter |
117 |
n_in_i = groupStartRow(i+1) - groupStartRow(i) |
852 |
chrisfen |
532 |
|
853 |
gezelter |
117 |
if (update_nlist) then |
854 |
|
|
#ifdef IS_MPI |
855 |
|
|
jstart = 1 |
856 |
|
|
jend = nGroupsInCol |
857 |
|
|
#else |
858 |
|
|
jstart = i+1 |
859 |
|
|
jend = nGroups |
860 |
|
|
#endif |
861 |
|
|
else |
862 |
|
|
jstart = point(i) |
863 |
|
|
jend = point(i+1) - 1 |
864 |
|
|
! make sure group i has neighbors |
865 |
|
|
if (jstart .gt. jend) cycle outer |
866 |
|
|
endif |
867 |
chrisfen |
532 |
|
868 |
gezelter |
117 |
do jnab = jstart, jend |
869 |
|
|
if (update_nlist) then |
870 |
|
|
j = jnab |
871 |
|
|
else |
872 |
|
|
j = list(jnab) |
873 |
|
|
endif |
874 |
|
|
|
875 |
|
|
#ifdef IS_MPI |
876 |
chuckv |
567 |
me_j = atid_col(j) |
877 |
gezelter |
117 |
call get_interatomic_vector(q_group_Row(:,i), & |
878 |
|
|
q_group_Col(:,j), d_grp, rgrpsq) |
879 |
|
|
#else |
880 |
chuckv |
567 |
me_j = atid(j) |
881 |
gezelter |
117 |
call get_interatomic_vector(q_group(:,i), & |
882 |
|
|
q_group(:,j), d_grp, rgrpsq) |
883 |
chrisfen |
618 |
#endif |
884 |
gezelter |
117 |
|
885 |
chuckv |
651 |
if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rListsq) then |
886 |
gezelter |
117 |
if (update_nlist) then |
887 |
|
|
nlist = nlist + 1 |
888 |
chrisfen |
532 |
|
889 |
gezelter |
117 |
if (nlist > neighborListSize) then |
890 |
|
|
#ifdef IS_MPI |
891 |
|
|
call expandNeighborList(nGroupsInRow, listerror) |
892 |
|
|
#else |
893 |
|
|
call expandNeighborList(nGroups, listerror) |
894 |
|
|
#endif |
895 |
|
|
if (listerror /= 0) then |
896 |
|
|
error = -1 |
897 |
|
|
write(DEFAULT_ERROR,*) "ERROR: nlist > list size and max allocations exceeded." |
898 |
|
|
return |
899 |
|
|
end if |
900 |
|
|
neighborListSize = size(list) |
901 |
|
|
endif |
902 |
chrisfen |
532 |
|
903 |
gezelter |
117 |
list(nlist) = j |
904 |
|
|
endif |
905 |
chrisfen |
532 |
|
906 |
gezelter |
117 |
if (loop .eq. PAIR_LOOP) then |
907 |
|
|
vij = 0.0d0 |
908 |
|
|
fij(1:3) = 0.0d0 |
909 |
|
|
endif |
910 |
chrisfen |
532 |
|
911 |
gezelter |
117 |
call get_switch(rgrpsq, sw, dswdr, rgrp, group_switch, & |
912 |
|
|
in_switching_region) |
913 |
chrisfen |
532 |
|
914 |
gezelter |
117 |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
915 |
chrisfen |
532 |
|
916 |
gezelter |
117 |
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
917 |
chrisfen |
532 |
|
918 |
gezelter |
117 |
atom1 = groupListRow(ia) |
919 |
chrisfen |
532 |
|
920 |
gezelter |
117 |
inner: do jb = groupStartCol(j), groupStartCol(j+1)-1 |
921 |
chrisfen |
532 |
|
922 |
gezelter |
117 |
atom2 = groupListCol(jb) |
923 |
chrisfen |
532 |
|
924 |
gezelter |
117 |
if (skipThisPair(atom1, atom2)) cycle inner |
925 |
|
|
|
926 |
|
|
if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then |
927 |
|
|
d_atm(1:3) = d_grp(1:3) |
928 |
|
|
ratmsq = rgrpsq |
929 |
|
|
else |
930 |
|
|
#ifdef IS_MPI |
931 |
|
|
call get_interatomic_vector(q_Row(:,atom1), & |
932 |
|
|
q_Col(:,atom2), d_atm, ratmsq) |
933 |
|
|
#else |
934 |
|
|
call get_interatomic_vector(q(:,atom1), & |
935 |
|
|
q(:,atom2), d_atm, ratmsq) |
936 |
|
|
#endif |
937 |
|
|
endif |
938 |
|
|
|
939 |
|
|
if (loop .eq. PREPAIR_LOOP) then |
940 |
|
|
#ifdef IS_MPI |
941 |
|
|
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
942 |
|
|
rgrpsq, d_grp, do_pot, do_stress, & |
943 |
gezelter |
246 |
eFrame, A, f, t, pot_local) |
944 |
gezelter |
117 |
#else |
945 |
|
|
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
946 |
|
|
rgrpsq, d_grp, do_pot, do_stress, & |
947 |
gezelter |
246 |
eFrame, A, f, t, pot) |
948 |
gezelter |
117 |
#endif |
949 |
|
|
else |
950 |
|
|
#ifdef IS_MPI |
951 |
|
|
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
952 |
chrisfen |
695 |
do_pot, eFrame, A, f, t, pot_local, vpair, & |
953 |
|
|
fpair, d_grp, rgrp) |
954 |
gezelter |
117 |
#else |
955 |
|
|
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
956 |
chrisfen |
695 |
do_pot, eFrame, A, f, t, pot, vpair, fpair, & |
957 |
|
|
d_grp, rgrp) |
958 |
gezelter |
117 |
#endif |
959 |
|
|
|
960 |
|
|
vij = vij + vpair |
961 |
|
|
fij(1:3) = fij(1:3) + fpair(1:3) |
962 |
|
|
endif |
963 |
|
|
enddo inner |
964 |
|
|
enddo |
965 |
chrisfen |
532 |
|
966 |
gezelter |
117 |
if (loop .eq. PAIR_LOOP) then |
967 |
|
|
if (in_switching_region) then |
968 |
|
|
swderiv = vij*dswdr/rgrp |
969 |
|
|
fij(1) = fij(1) + swderiv*d_grp(1) |
970 |
|
|
fij(2) = fij(2) + swderiv*d_grp(2) |
971 |
|
|
fij(3) = fij(3) + swderiv*d_grp(3) |
972 |
chrisfen |
532 |
|
973 |
gezelter |
117 |
do ia=groupStartRow(i), groupStartRow(i+1)-1 |
974 |
|
|
atom1=groupListRow(ia) |
975 |
|
|
mf = mfactRow(atom1) |
976 |
|
|
#ifdef IS_MPI |
977 |
|
|
f_Row(1,atom1) = f_Row(1,atom1) + swderiv*d_grp(1)*mf |
978 |
|
|
f_Row(2,atom1) = f_Row(2,atom1) + swderiv*d_grp(2)*mf |
979 |
|
|
f_Row(3,atom1) = f_Row(3,atom1) + swderiv*d_grp(3)*mf |
980 |
|
|
#else |
981 |
|
|
f(1,atom1) = f(1,atom1) + swderiv*d_grp(1)*mf |
982 |
|
|
f(2,atom1) = f(2,atom1) + swderiv*d_grp(2)*mf |
983 |
|
|
f(3,atom1) = f(3,atom1) + swderiv*d_grp(3)*mf |
984 |
|
|
#endif |
985 |
|
|
enddo |
986 |
chrisfen |
532 |
|
987 |
gezelter |
117 |
do jb=groupStartCol(j), groupStartCol(j+1)-1 |
988 |
|
|
atom2=groupListCol(jb) |
989 |
|
|
mf = mfactCol(atom2) |
990 |
|
|
#ifdef IS_MPI |
991 |
|
|
f_Col(1,atom2) = f_Col(1,atom2) - swderiv*d_grp(1)*mf |
992 |
|
|
f_Col(2,atom2) = f_Col(2,atom2) - swderiv*d_grp(2)*mf |
993 |
|
|
f_Col(3,atom2) = f_Col(3,atom2) - swderiv*d_grp(3)*mf |
994 |
|
|
#else |
995 |
|
|
f(1,atom2) = f(1,atom2) - swderiv*d_grp(1)*mf |
996 |
|
|
f(2,atom2) = f(2,atom2) - swderiv*d_grp(2)*mf |
997 |
|
|
f(3,atom2) = f(3,atom2) - swderiv*d_grp(3)*mf |
998 |
|
|
#endif |
999 |
|
|
enddo |
1000 |
|
|
endif |
1001 |
chrisfen |
532 |
|
1002 |
gezelter |
117 |
if (do_stress) call add_stress_tensor(d_grp, fij) |
1003 |
|
|
endif |
1004 |
|
|
end if |
1005 |
|
|
enddo |
1006 |
chrisfen |
643 |
|
1007 |
gezelter |
117 |
enddo outer |
1008 |
chrisfen |
532 |
|
1009 |
gezelter |
117 |
if (update_nlist) then |
1010 |
|
|
#ifdef IS_MPI |
1011 |
|
|
point(nGroupsInRow + 1) = nlist + 1 |
1012 |
|
|
#else |
1013 |
|
|
point(nGroups) = nlist + 1 |
1014 |
|
|
#endif |
1015 |
|
|
if (loop .eq. PREPAIR_LOOP) then |
1016 |
|
|
! we just did the neighbor list update on the first |
1017 |
|
|
! pass, so we don't need to do it |
1018 |
|
|
! again on the second pass |
1019 |
|
|
update_nlist = .false. |
1020 |
|
|
endif |
1021 |
|
|
endif |
1022 |
chrisfen |
532 |
|
1023 |
gezelter |
117 |
if (loop .eq. PREPAIR_LOOP) then |
1024 |
|
|
call do_preforce(nlocal, pot) |
1025 |
|
|
endif |
1026 |
chrisfen |
532 |
|
1027 |
gezelter |
117 |
enddo |
1028 |
chrisfen |
532 |
|
1029 |
gezelter |
117 |
!! Do timing |
1030 |
|
|
#ifdef PROFILE |
1031 |
|
|
call cpu_time(forceTimeFinal) |
1032 |
|
|
forceTime = forceTime + forceTimeFinal - forceTimeInitial |
1033 |
|
|
#endif |
1034 |
chrisfen |
532 |
|
1035 |
gezelter |
117 |
#ifdef IS_MPI |
1036 |
|
|
!!distribute forces |
1037 |
chrisfen |
532 |
|
1038 |
gezelter |
117 |
f_temp = 0.0_dp |
1039 |
|
|
call scatter(f_Row,f_temp,plan_atom_row_3d) |
1040 |
|
|
do i = 1,nlocal |
1041 |
|
|
f(1:3,i) = f(1:3,i) + f_temp(1:3,i) |
1042 |
|
|
end do |
1043 |
chrisfen |
532 |
|
1044 |
gezelter |
117 |
f_temp = 0.0_dp |
1045 |
|
|
call scatter(f_Col,f_temp,plan_atom_col_3d) |
1046 |
|
|
do i = 1,nlocal |
1047 |
|
|
f(1:3,i) = f(1:3,i) + f_temp(1:3,i) |
1048 |
|
|
end do |
1049 |
chrisfen |
532 |
|
1050 |
gezelter |
141 |
if (FF_UsesDirectionalAtoms() .and. SIM_uses_DirectionalAtoms) then |
1051 |
gezelter |
117 |
t_temp = 0.0_dp |
1052 |
|
|
call scatter(t_Row,t_temp,plan_atom_row_3d) |
1053 |
|
|
do i = 1,nlocal |
1054 |
|
|
t(1:3,i) = t(1:3,i) + t_temp(1:3,i) |
1055 |
|
|
end do |
1056 |
|
|
t_temp = 0.0_dp |
1057 |
|
|
call scatter(t_Col,t_temp,plan_atom_col_3d) |
1058 |
chrisfen |
532 |
|
1059 |
gezelter |
117 |
do i = 1,nlocal |
1060 |
|
|
t(1:3,i) = t(1:3,i) + t_temp(1:3,i) |
1061 |
|
|
end do |
1062 |
|
|
endif |
1063 |
chrisfen |
532 |
|
1064 |
gezelter |
117 |
if (do_pot) then |
1065 |
|
|
! scatter/gather pot_row into the members of my column |
1066 |
gezelter |
662 |
do i = 1,LR_POT_TYPES |
1067 |
chuckv |
657 |
call scatter(pot_Row(i,:), pot_Temp(i,:), plan_atom_row) |
1068 |
|
|
end do |
1069 |
gezelter |
117 |
! scatter/gather pot_local into all other procs |
1070 |
|
|
! add resultant to get total pot |
1071 |
|
|
do i = 1, nlocal |
1072 |
gezelter |
662 |
pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES) & |
1073 |
|
|
+ pot_Temp(1:LR_POT_TYPES,i) |
1074 |
gezelter |
117 |
enddo |
1075 |
chrisfen |
532 |
|
1076 |
gezelter |
117 |
pot_Temp = 0.0_DP |
1077 |
gezelter |
662 |
do i = 1,LR_POT_TYPES |
1078 |
chuckv |
657 |
call scatter(pot_Col(i,:), pot_Temp(i,:), plan_atom_col) |
1079 |
|
|
end do |
1080 |
gezelter |
117 |
do i = 1, nlocal |
1081 |
gezelter |
662 |
pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES)& |
1082 |
|
|
+ pot_Temp(1:LR_POT_TYPES,i) |
1083 |
gezelter |
117 |
enddo |
1084 |
chrisfen |
532 |
|
1085 |
gezelter |
117 |
endif |
1086 |
|
|
#endif |
1087 |
chrisfen |
532 |
|
1088 |
chrisfen |
691 |
if (SIM_requires_postpair_calc) then |
1089 |
chrisfen |
695 |
do i = 1, nlocal |
1090 |
|
|
|
1091 |
|
|
! we loop only over the local atoms, so we don't need row and column |
1092 |
|
|
! lookups for the types |
1093 |
chrisfen |
532 |
|
1094 |
chrisfen |
691 |
me_i = atid(i) |
1095 |
|
|
|
1096 |
chrisfen |
695 |
! is the atom electrostatic? See if it would have an |
1097 |
|
|
! electrostatic interaction with itself |
1098 |
|
|
iHash = InteractionHash(me_i,me_i) |
1099 |
|
|
|
1100 |
chrisfen |
691 |
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1101 |
gezelter |
117 |
#ifdef IS_MPI |
1102 |
chrisfen |
695 |
call rf_self_self(i, eFrame, pot_local(ELECTROSTATIC_POT), & |
1103 |
|
|
t, do_pot) |
1104 |
gezelter |
117 |
#else |
1105 |
chrisfen |
695 |
call rf_self_self(i, eFrame, pot(ELECTROSTATIC_POT), & |
1106 |
|
|
t, do_pot) |
1107 |
gezelter |
117 |
#endif |
1108 |
chrisfen |
691 |
endif |
1109 |
|
|
enddo |
1110 |
gezelter |
117 |
endif |
1111 |
chrisfen |
691 |
|
1112 |
gezelter |
117 |
#ifdef IS_MPI |
1113 |
chrisfen |
695 |
|
1114 |
gezelter |
117 |
if (do_pot) then |
1115 |
chrisfen |
695 |
call mpi_allreduce(pot_local, pot, LR_POT_TYPES,mpi_double_precision,mpi_sum, & |
1116 |
|
|
mpi_comm_world,mpi_err) |
1117 |
gezelter |
117 |
endif |
1118 |
chrisfen |
695 |
|
1119 |
gezelter |
117 |
if (do_stress) then |
1120 |
|
|
call mpi_allreduce(tau_Temp, tau, 9,mpi_double_precision,mpi_sum, & |
1121 |
|
|
mpi_comm_world,mpi_err) |
1122 |
|
|
call mpi_allreduce(virial_Temp, virial,1,mpi_double_precision,mpi_sum, & |
1123 |
|
|
mpi_comm_world,mpi_err) |
1124 |
|
|
endif |
1125 |
chrisfen |
695 |
|
1126 |
gezelter |
117 |
#else |
1127 |
chrisfen |
695 |
|
1128 |
gezelter |
117 |
if (do_stress) then |
1129 |
|
|
tau = tau_Temp |
1130 |
|
|
virial = virial_Temp |
1131 |
|
|
endif |
1132 |
chrisfen |
695 |
|
1133 |
gezelter |
117 |
#endif |
1134 |
chrisfen |
695 |
|
1135 |
gezelter |
117 |
end subroutine do_force_loop |
1136 |
chrisfen |
532 |
|
1137 |
gezelter |
117 |
subroutine do_pair(i, j, rijsq, d, sw, do_pot, & |
1138 |
chrisfen |
695 |
eFrame, A, f, t, pot, vpair, fpair, d_grp, r_grp) |
1139 |
gezelter |
117 |
|
1140 |
chuckv |
656 |
real( kind = dp ) :: vpair, sw |
1141 |
gezelter |
662 |
real( kind = dp ), dimension(LR_POT_TYPES) :: pot |
1142 |
gezelter |
117 |
real( kind = dp ), dimension(3) :: fpair |
1143 |
|
|
real( kind = dp ), dimension(nLocal) :: mfact |
1144 |
gezelter |
246 |
real( kind = dp ), dimension(9,nLocal) :: eFrame |
1145 |
gezelter |
117 |
real( kind = dp ), dimension(9,nLocal) :: A |
1146 |
|
|
real( kind = dp ), dimension(3,nLocal) :: f |
1147 |
|
|
real( kind = dp ), dimension(3,nLocal) :: t |
1148 |
|
|
|
1149 |
|
|
logical, intent(inout) :: do_pot |
1150 |
|
|
integer, intent(in) :: i, j |
1151 |
|
|
real ( kind = dp ), intent(inout) :: rijsq |
1152 |
chrisfen |
695 |
real ( kind = dp ), intent(inout) :: r_grp |
1153 |
gezelter |
117 |
real ( kind = dp ), intent(inout) :: d(3) |
1154 |
chrisfen |
695 |
real ( kind = dp ), intent(inout) :: d_grp(3) |
1155 |
|
|
real ( kind = dp ) :: r |
1156 |
gezelter |
117 |
integer :: me_i, me_j |
1157 |
|
|
|
1158 |
gezelter |
571 |
integer :: iHash |
1159 |
gezelter |
560 |
|
1160 |
gezelter |
117 |
r = sqrt(rijsq) |
1161 |
|
|
vpair = 0.0d0 |
1162 |
|
|
fpair(1:3) = 0.0d0 |
1163 |
|
|
|
1164 |
|
|
#ifdef IS_MPI |
1165 |
|
|
me_i = atid_row(i) |
1166 |
|
|
me_j = atid_col(j) |
1167 |
|
|
#else |
1168 |
|
|
me_i = atid(i) |
1169 |
|
|
me_j = atid(j) |
1170 |
|
|
#endif |
1171 |
gezelter |
202 |
|
1172 |
gezelter |
571 |
iHash = InteractionHash(me_i, me_j) |
1173 |
chrisfen |
532 |
|
1174 |
gezelter |
571 |
if ( iand(iHash, LJ_PAIR).ne.0 ) then |
1175 |
gezelter |
662 |
call do_lj_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1176 |
|
|
pot(VDW_POT), f, do_pot) |
1177 |
gezelter |
117 |
endif |
1178 |
chrisfen |
532 |
|
1179 |
gezelter |
571 |
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1180 |
gezelter |
560 |
call doElectrostaticPair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1181 |
chuckv |
656 |
pot(ELECTROSTATIC_POT), eFrame, f, t, do_pot) |
1182 |
gezelter |
117 |
endif |
1183 |
|
|
|
1184 |
gezelter |
571 |
if ( iand(iHash, STICKY_PAIR).ne.0 ) then |
1185 |
gezelter |
560 |
call do_sticky_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1186 |
gezelter |
662 |
pot(HB_POT), A, f, t, do_pot) |
1187 |
gezelter |
560 |
endif |
1188 |
gezelter |
401 |
|
1189 |
gezelter |
571 |
if ( iand(iHash, STICKYPOWER_PAIR).ne.0 ) then |
1190 |
gezelter |
560 |
call do_sticky_power_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1191 |
gezelter |
662 |
pot(HB_POT), A, f, t, do_pot) |
1192 |
gezelter |
117 |
endif |
1193 |
|
|
|
1194 |
gezelter |
571 |
if ( iand(iHash, GAYBERNE_PAIR).ne.0 ) then |
1195 |
gezelter |
560 |
call do_gb_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1196 |
gezelter |
662 |
pot(VDW_POT), A, f, t, do_pot) |
1197 |
chrisfen |
532 |
endif |
1198 |
|
|
|
1199 |
gezelter |
571 |
if ( iand(iHash, GAYBERNE_LJ).ne.0 ) then |
1200 |
kdaily |
668 |
call do_gb_lj_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1201 |
|
|
pot(VDW_POT), A, f, t, do_pot) |
1202 |
gezelter |
560 |
endif |
1203 |
kdaily |
529 |
|
1204 |
gezelter |
571 |
if ( iand(iHash, EAM_PAIR).ne.0 ) then |
1205 |
gezelter |
662 |
call do_eam_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1206 |
|
|
pot(METALLIC_POT), f, do_pot) |
1207 |
gezelter |
117 |
endif |
1208 |
chrisfen |
532 |
|
1209 |
gezelter |
571 |
if ( iand(iHash, SHAPE_PAIR).ne.0 ) then |
1210 |
gezelter |
560 |
call do_shape_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1211 |
gezelter |
662 |
pot(VDW_POT), A, f, t, do_pot) |
1212 |
gezelter |
117 |
endif |
1213 |
gezelter |
141 |
|
1214 |
gezelter |
571 |
if ( iand(iHash, SHAPE_LJ).ne.0 ) then |
1215 |
gezelter |
560 |
call do_shape_pair(i, j, d, r, rijsq, sw, vpair, fpair, & |
1216 |
gezelter |
662 |
pot(VDW_POT), A, f, t, do_pot) |
1217 |
gezelter |
141 |
endif |
1218 |
gezelter |
560 |
|
1219 |
gezelter |
117 |
end subroutine do_pair |
1220 |
|
|
|
1221 |
|
|
subroutine do_prepair(i, j, rijsq, d, sw, rcijsq, dc, & |
1222 |
gezelter |
246 |
do_pot, do_stress, eFrame, A, f, t, pot) |
1223 |
gezelter |
117 |
|
1224 |
chuckv |
656 |
real( kind = dp ) :: sw |
1225 |
gezelter |
662 |
real( kind = dp ), dimension(LR_POT_TYPES) :: pot |
1226 |
chrisfen |
532 |
real( kind = dp ), dimension(9,nLocal) :: eFrame |
1227 |
|
|
real (kind=dp), dimension(9,nLocal) :: A |
1228 |
|
|
real (kind=dp), dimension(3,nLocal) :: f |
1229 |
|
|
real (kind=dp), dimension(3,nLocal) :: t |
1230 |
gezelter |
117 |
|
1231 |
chrisfen |
532 |
logical, intent(inout) :: do_pot, do_stress |
1232 |
|
|
integer, intent(in) :: i, j |
1233 |
|
|
real ( kind = dp ), intent(inout) :: rijsq, rcijsq |
1234 |
|
|
real ( kind = dp ) :: r, rc |
1235 |
|
|
real ( kind = dp ), intent(inout) :: d(3), dc(3) |
1236 |
|
|
|
1237 |
gezelter |
571 |
integer :: me_i, me_j, iHash |
1238 |
chrisfen |
532 |
|
1239 |
gezelter |
591 |
r = sqrt(rijsq) |
1240 |
|
|
|
1241 |
gezelter |
117 |
#ifdef IS_MPI |
1242 |
chrisfen |
532 |
me_i = atid_row(i) |
1243 |
|
|
me_j = atid_col(j) |
1244 |
gezelter |
117 |
#else |
1245 |
chrisfen |
532 |
me_i = atid(i) |
1246 |
|
|
me_j = atid(j) |
1247 |
gezelter |
117 |
#endif |
1248 |
chrisfen |
532 |
|
1249 |
gezelter |
571 |
iHash = InteractionHash(me_i, me_j) |
1250 |
chrisfen |
532 |
|
1251 |
gezelter |
571 |
if ( iand(iHash, EAM_PAIR).ne.0 ) then |
1252 |
chrisfen |
532 |
call calc_EAM_prepair_rho(i, j, d, r, rijsq ) |
1253 |
|
|
endif |
1254 |
gezelter |
560 |
|
1255 |
chrisfen |
532 |
end subroutine do_prepair |
1256 |
|
|
|
1257 |
|
|
|
1258 |
|
|
subroutine do_preforce(nlocal,pot) |
1259 |
|
|
integer :: nlocal |
1260 |
gezelter |
662 |
real( kind = dp ),dimension(LR_POT_TYPES) :: pot |
1261 |
chrisfen |
532 |
|
1262 |
|
|
if (FF_uses_EAM .and. SIM_uses_EAM) then |
1263 |
gezelter |
662 |
call calc_EAM_preforce_Frho(nlocal,pot(METALLIC_POT)) |
1264 |
chrisfen |
532 |
endif |
1265 |
|
|
|
1266 |
|
|
|
1267 |
|
|
end subroutine do_preforce |
1268 |
|
|
|
1269 |
|
|
|
1270 |
|
|
subroutine get_interatomic_vector(q_i, q_j, d, r_sq) |
1271 |
|
|
|
1272 |
|
|
real (kind = dp), dimension(3) :: q_i |
1273 |
|
|
real (kind = dp), dimension(3) :: q_j |
1274 |
|
|
real ( kind = dp ), intent(out) :: r_sq |
1275 |
|
|
real( kind = dp ) :: d(3), scaled(3) |
1276 |
|
|
integer i |
1277 |
|
|
|
1278 |
|
|
d(1:3) = q_j(1:3) - q_i(1:3) |
1279 |
|
|
|
1280 |
|
|
! Wrap back into periodic box if necessary |
1281 |
|
|
if ( SIM_uses_PBC ) then |
1282 |
|
|
|
1283 |
|
|
if( .not.boxIsOrthorhombic ) then |
1284 |
|
|
! calc the scaled coordinates. |
1285 |
|
|
|
1286 |
|
|
scaled = matmul(HmatInv, d) |
1287 |
|
|
|
1288 |
|
|
! wrap the scaled coordinates |
1289 |
|
|
|
1290 |
|
|
scaled = scaled - anint(scaled) |
1291 |
|
|
|
1292 |
|
|
|
1293 |
|
|
! calc the wrapped real coordinates from the wrapped scaled |
1294 |
|
|
! coordinates |
1295 |
|
|
|
1296 |
|
|
d = matmul(Hmat,scaled) |
1297 |
|
|
|
1298 |
|
|
else |
1299 |
|
|
! calc the scaled coordinates. |
1300 |
|
|
|
1301 |
|
|
do i = 1, 3 |
1302 |
|
|
scaled(i) = d(i) * HmatInv(i,i) |
1303 |
|
|
|
1304 |
|
|
! wrap the scaled coordinates |
1305 |
|
|
|
1306 |
|
|
scaled(i) = scaled(i) - anint(scaled(i)) |
1307 |
|
|
|
1308 |
|
|
! calc the wrapped real coordinates from the wrapped scaled |
1309 |
|
|
! coordinates |
1310 |
|
|
|
1311 |
|
|
d(i) = scaled(i)*Hmat(i,i) |
1312 |
|
|
enddo |
1313 |
|
|
endif |
1314 |
|
|
|
1315 |
|
|
endif |
1316 |
|
|
|
1317 |
|
|
r_sq = dot_product(d,d) |
1318 |
|
|
|
1319 |
|
|
end subroutine get_interatomic_vector |
1320 |
|
|
|
1321 |
|
|
subroutine zero_work_arrays() |
1322 |
|
|
|
1323 |
gezelter |
117 |
#ifdef IS_MPI |
1324 |
|
|
|
1325 |
chrisfen |
532 |
q_Row = 0.0_dp |
1326 |
|
|
q_Col = 0.0_dp |
1327 |
|
|
|
1328 |
|
|
q_group_Row = 0.0_dp |
1329 |
|
|
q_group_Col = 0.0_dp |
1330 |
|
|
|
1331 |
|
|
eFrame_Row = 0.0_dp |
1332 |
|
|
eFrame_Col = 0.0_dp |
1333 |
|
|
|
1334 |
|
|
A_Row = 0.0_dp |
1335 |
|
|
A_Col = 0.0_dp |
1336 |
|
|
|
1337 |
|
|
f_Row = 0.0_dp |
1338 |
|
|
f_Col = 0.0_dp |
1339 |
|
|
f_Temp = 0.0_dp |
1340 |
|
|
|
1341 |
|
|
t_Row = 0.0_dp |
1342 |
|
|
t_Col = 0.0_dp |
1343 |
|
|
t_Temp = 0.0_dp |
1344 |
|
|
|
1345 |
|
|
pot_Row = 0.0_dp |
1346 |
|
|
pot_Col = 0.0_dp |
1347 |
|
|
pot_Temp = 0.0_dp |
1348 |
|
|
|
1349 |
|
|
rf_Row = 0.0_dp |
1350 |
|
|
rf_Col = 0.0_dp |
1351 |
|
|
rf_Temp = 0.0_dp |
1352 |
|
|
|
1353 |
gezelter |
117 |
#endif |
1354 |
chrisfen |
532 |
|
1355 |
|
|
if (FF_uses_EAM .and. SIM_uses_EAM) then |
1356 |
|
|
call clean_EAM() |
1357 |
|
|
endif |
1358 |
|
|
|
1359 |
|
|
rf = 0.0_dp |
1360 |
|
|
tau_Temp = 0.0_dp |
1361 |
|
|
virial_Temp = 0.0_dp |
1362 |
|
|
end subroutine zero_work_arrays |
1363 |
|
|
|
1364 |
|
|
function skipThisPair(atom1, atom2) result(skip_it) |
1365 |
|
|
integer, intent(in) :: atom1 |
1366 |
|
|
integer, intent(in), optional :: atom2 |
1367 |
|
|
logical :: skip_it |
1368 |
|
|
integer :: unique_id_1, unique_id_2 |
1369 |
|
|
integer :: me_i,me_j |
1370 |
|
|
integer :: i |
1371 |
|
|
|
1372 |
|
|
skip_it = .false. |
1373 |
|
|
|
1374 |
|
|
!! there are a number of reasons to skip a pair or a particle |
1375 |
|
|
!! mostly we do this to exclude atoms who are involved in short |
1376 |
|
|
!! range interactions (bonds, bends, torsions), but we also need |
1377 |
|
|
!! to exclude some overcounted interactions that result from |
1378 |
|
|
!! the parallel decomposition |
1379 |
|
|
|
1380 |
gezelter |
117 |
#ifdef IS_MPI |
1381 |
chrisfen |
532 |
!! in MPI, we have to look up the unique IDs for each atom |
1382 |
|
|
unique_id_1 = AtomRowToGlobal(atom1) |
1383 |
gezelter |
117 |
#else |
1384 |
chrisfen |
532 |
!! in the normal loop, the atom numbers are unique |
1385 |
|
|
unique_id_1 = atom1 |
1386 |
gezelter |
117 |
#endif |
1387 |
chrisfen |
532 |
|
1388 |
|
|
!! We were called with only one atom, so just check the global exclude |
1389 |
|
|
!! list for this atom |
1390 |
|
|
if (.not. present(atom2)) then |
1391 |
|
|
do i = 1, nExcludes_global |
1392 |
|
|
if (excludesGlobal(i) == unique_id_1) then |
1393 |
|
|
skip_it = .true. |
1394 |
|
|
return |
1395 |
|
|
end if |
1396 |
|
|
end do |
1397 |
|
|
return |
1398 |
|
|
end if |
1399 |
|
|
|
1400 |
gezelter |
117 |
#ifdef IS_MPI |
1401 |
chrisfen |
532 |
unique_id_2 = AtomColToGlobal(atom2) |
1402 |
gezelter |
117 |
#else |
1403 |
chrisfen |
532 |
unique_id_2 = atom2 |
1404 |
gezelter |
117 |
#endif |
1405 |
chrisfen |
532 |
|
1406 |
gezelter |
117 |
#ifdef IS_MPI |
1407 |
chrisfen |
532 |
!! this situation should only arise in MPI simulations |
1408 |
|
|
if (unique_id_1 == unique_id_2) then |
1409 |
|
|
skip_it = .true. |
1410 |
|
|
return |
1411 |
|
|
end if |
1412 |
|
|
|
1413 |
|
|
!! this prevents us from doing the pair on multiple processors |
1414 |
|
|
if (unique_id_1 < unique_id_2) then |
1415 |
|
|
if (mod(unique_id_1 + unique_id_2,2) == 0) then |
1416 |
|
|
skip_it = .true. |
1417 |
|
|
return |
1418 |
|
|
endif |
1419 |
|
|
else |
1420 |
|
|
if (mod(unique_id_1 + unique_id_2,2) == 1) then |
1421 |
|
|
skip_it = .true. |
1422 |
|
|
return |
1423 |
|
|
endif |
1424 |
|
|
endif |
1425 |
gezelter |
117 |
#endif |
1426 |
chrisfen |
532 |
|
1427 |
|
|
!! the rest of these situations can happen in all simulations: |
1428 |
|
|
do i = 1, nExcludes_global |
1429 |
|
|
if ((excludesGlobal(i) == unique_id_1) .or. & |
1430 |
|
|
(excludesGlobal(i) == unique_id_2)) then |
1431 |
|
|
skip_it = .true. |
1432 |
|
|
return |
1433 |
|
|
endif |
1434 |
|
|
enddo |
1435 |
|
|
|
1436 |
|
|
do i = 1, nSkipsForAtom(atom1) |
1437 |
|
|
if (skipsForAtom(atom1, i) .eq. unique_id_2) then |
1438 |
|
|
skip_it = .true. |
1439 |
|
|
return |
1440 |
|
|
endif |
1441 |
|
|
end do |
1442 |
|
|
|
1443 |
|
|
return |
1444 |
|
|
end function skipThisPair |
1445 |
|
|
|
1446 |
|
|
function FF_UsesDirectionalAtoms() result(doesit) |
1447 |
|
|
logical :: doesit |
1448 |
gezelter |
571 |
doesit = FF_uses_DirectionalAtoms |
1449 |
chrisfen |
532 |
end function FF_UsesDirectionalAtoms |
1450 |
|
|
|
1451 |
|
|
function FF_RequiresPrepairCalc() result(doesit) |
1452 |
|
|
logical :: doesit |
1453 |
|
|
doesit = FF_uses_EAM |
1454 |
|
|
end function FF_RequiresPrepairCalc |
1455 |
|
|
|
1456 |
gezelter |
117 |
#ifdef PROFILE |
1457 |
chrisfen |
532 |
function getforcetime() result(totalforcetime) |
1458 |
|
|
real(kind=dp) :: totalforcetime |
1459 |
|
|
totalforcetime = forcetime |
1460 |
|
|
end function getforcetime |
1461 |
gezelter |
117 |
#endif |
1462 |
|
|
|
1463 |
chrisfen |
532 |
!! This cleans componets of force arrays belonging only to fortran |
1464 |
|
|
|
1465 |
|
|
subroutine add_stress_tensor(dpair, fpair) |
1466 |
|
|
|
1467 |
|
|
real( kind = dp ), dimension(3), intent(in) :: dpair, fpair |
1468 |
|
|
|
1469 |
|
|
! because the d vector is the rj - ri vector, and |
1470 |
|
|
! because fx, fy, fz are the force on atom i, we need a |
1471 |
|
|
! negative sign here: |
1472 |
|
|
|
1473 |
|
|
tau_Temp(1) = tau_Temp(1) - dpair(1) * fpair(1) |
1474 |
|
|
tau_Temp(2) = tau_Temp(2) - dpair(1) * fpair(2) |
1475 |
|
|
tau_Temp(3) = tau_Temp(3) - dpair(1) * fpair(3) |
1476 |
|
|
tau_Temp(4) = tau_Temp(4) - dpair(2) * fpair(1) |
1477 |
|
|
tau_Temp(5) = tau_Temp(5) - dpair(2) * fpair(2) |
1478 |
|
|
tau_Temp(6) = tau_Temp(6) - dpair(2) * fpair(3) |
1479 |
|
|
tau_Temp(7) = tau_Temp(7) - dpair(3) * fpair(1) |
1480 |
|
|
tau_Temp(8) = tau_Temp(8) - dpair(3) * fpair(2) |
1481 |
|
|
tau_Temp(9) = tau_Temp(9) - dpair(3) * fpair(3) |
1482 |
|
|
|
1483 |
|
|
virial_Temp = virial_Temp + & |
1484 |
|
|
(tau_Temp(1) + tau_Temp(5) + tau_Temp(9)) |
1485 |
|
|
|
1486 |
|
|
end subroutine add_stress_tensor |
1487 |
|
|
|
1488 |
gezelter |
117 |
end module doForces |