fixing the build system
Build fixes for qhull 2011, fixes for compilation with PGI.
Creating busticated version of OpenMD
removing spurious cutoffGroup lines from default water.md sample files
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Many fixes for Charmm-type torsions.
Fixed Makefile problems with the samples and added several missing makefiles.
converted samples over to the OOPSE-4 file format Fixed an MPI bug in thermodynamic integration
Added tred to sample water.md files
Added TIP5P-E and fixed a bug for Thermodynamic integration (you can now have a lambda of 0)
Removed sqrt splines and shape stuff (doesn't work, so why was it in there?). Changed some of the water samples to use shifted_force. Probably should set the defaults to use the damped version now that we sped it up.
remove deprecated keywords from samples
fixing up the samples
just some random changes when testing
fixed some samples
fixing up some samples
Added TIP4P-Ew
added some samples
fixed a bug in MPI restraints
Oops... MPI now builds...
fixes to restraints
fixing restraints
First commit of the new restraints code
fixed a sample
oops...
Back to normal... Oh... Restraints should work in parallel now
just some testing changes, I'll return to the original on next commit
working sample
Fun with ice
fix Makefile under water directory
add Makefile to sample directory
Import of OOPSE v. 2.0