fixing the build system
Creating busticated version of OpenMD
removing spurious cutoffGroup lines from default water.md sample files
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Fixed Makefile problems with the samples and added several missing makefiles.
converted samples over to the OOPSE-4 file format Fixed an MPI bug in thermodynamic integration
Added tred to sample water.md files
Added TIP5P-E and fixed a bug for Thermodynamic integration (you can now have a lambda of 0)
remove deprecated keywords from samples
fixing up the samples
fixed some samples
fixing up some samples
Updated tap sample
added a tap example for testing purposes