Fixing some bugs in optimization, fixing status functions so that they dump correctly (although some things are deferred until the Stats is accumulator-based).
fixing some bugs, adding Shake
added a minimizer parsing block
Creating busticated version of OpenMD
Added svn revision number to build process, incremented minor version number, corrected a minimizer keyword
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
converted samples over to the OOPSE-4 file format Fixed an MPI bug in thermodynamic integration
remove deprecated keywords from samples
fixing up some samples
fixed up some sample md files
Import of OOPSE v. 2.0
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