Build fixes for qhull 2011, fixes for compilation with PGI.
Creating busticated version of OpenMD
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
converted samples over to the OOPSE-4 file format Fixed an MPI bug in thermodynamic integration
removed icc from C++ search lines, did some formatting work on GB module, mucked around with a GB example
testing GB, removing CM drift in Langevin Dynamics, fixing a memory leak, adding a visitor
remove deprecated keywords from samples
added a few GB test cases
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