MERGE OpenMD trunk changes 1803:1811 into development branch
Started fixing some samples for OpenMD 2.0 release
MERGE OpenMD development branch 1465:1781 into trunk
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
more openbabel updates, also changing velocitizer to thermalizer to avoid a filename collision on case-insensitve file systems
Added velocitizer utility program, added samples of its use to the builder samples.
Adding samples for builders
fixing missing lattice arguments, adding a builder sample
adding builder samples
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