Added a Harmonic Torsion Type, fixed some bugs in RNEMD and waterReplacer.
MERGE OpenMD trunk changes 1803:1811 into development branch
Added files for fcc and pentagonal nanorod builders. Updated runMe in samples/builders to include nanorod builders.
fixing the build system
Creating busticated version of OpenMD
more changes to fix build process and divorce ourselves from CVS
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
more openbabel updates, also changing velocitizer to thermalizer to avoid a filename collision on case-insensitve file systems
Added velocitizer utility program, added samples of its use to the builder samples.
Adding samples for builders
fixing missing lattice arguments, adding a builder sample
adding builder samples