Merging trunk changes back to development branch
test
Added an adapter layer between the AtomType and the rest of the code to handle the bolt-on capabilities of new types. Fixed a long-standing bug in how storageLayout was being set to the maximum possible value. Started to add infrastructure for Polarizable and fluc-Q calculations.
Bug squashing
More modifications for paralllel rewrite
fixing c/fortran bugs
Creating busticated version of OpenMD
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
converted samples over to the OOPSE-4 file format Fixed an MPI bug in thermodynamic integration
remove deprecated keywords from samples
Import of OOPSE v. 2.0
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