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Comparing trunk/samples/SMIPD/water/water.md (file contents):
Revision 1392 by chuckv, Thu Feb 19 15:37:14 2009 UTC vs.
Revision 1393 by gezelter, Wed Nov 25 20:36:46 2009 UTC

# Line 75 | Line 75 | molecule{
75    rigidBody[0]{
76      members(0, 1);
77    }
78
79  cutoffGroup{
80    members(0, 1);
81  }
78   }
79  
80   molecule{
# Line 96 | Line 92 | molecule{
92      type = "H_TIP3P";
93      position( 0.0, -0.75695, 0.52032 );
94    }
99
95    
96 <  rigidBody[0]{
102 <    
96 >  rigidBody[0]{    
97      members(0, 1, 2);
98 <  }
105 <
106 <  
107 <  cutoffGroup{
108 <    
109 <    members(0, 1, 2);
110 <  }
98 >  }  
99   }
100  
101   molecule{
# Line 130 | Line 118 | molecule{
118      position( 0.0, 0.0, 0.08444 );
119    }
120    
121 <  rigidBody[0]{
134 <    
121 >  rigidBody[0]{    
122      members(0, 1, 2, 3);
123 <  }
137 <
138 <  
139 <  cutoffGroup{
140 <    
141 <    members(0, 1, 2, 3);
142 <  }
123 >  }  
124   }
125  
126   molecule{
# Line 162 | Line 143 | molecule{
143      position( 0.0, 0.0, 0.05944 );
144    }
145    
146 <  rigidBody[0]{
166 <    
146 >  rigidBody[0]{    
147      members(0, 1, 2, 3);
148    }
169
170  
171  cutoffGroup{
172    
173    members(0, 1, 2, 3);
174  }
149   }
150  
151   molecule{
# Line 199 | Line 173 | molecule{
173    }
174    
175    rigidBody[0]{
202    
203    members(0, 1, 2, 3, 4);
204  }
205
206  
207  cutoffGroup{
208    
176      members(0, 1, 2, 3, 4);
177    }
178   }
# Line 234 | Line 201 | molecule{
201      position( -0.57154, 0.0, -0.46971 );
202    }
203    
204 <  rigidBody[0]{
238 <    
204 >  rigidBody[0]{    
205      members(0, 1, 2, 3, 4);
206    }
241
242  
243  cutoffGroup{
244    
245    members(0, 1, 2, 3, 4);
246  }
207   }
208  
209   molecule{
210    name = "SPCE";
211    
212    atom[0]{
213 <    type = "O";
213 >    type = "O_SPCE";
214      position( 0.0, 0.0, -0.06461 );
215    }
216    atom[1]{
217 <    type = "H";
217 >    type = "H_SPCE";
218      position( 0.0, 0.81649, 0.51275 );
219    }
220    atom[2]{
221 <    type = "H";
221 >    type = "H_SPCE";
222      position( 0.0, -0.81649, 0.51275 );
223    }
224    
225 <  rigidBody[0]{
266 <    
225 >  rigidBody[0]{    
226      members(0, 1, 2);
227    }
269
270  
271  cutoffGroup{
272    
273    members(0, 1, 2);
274  }
228   }
229  
230   molecule{
# Line 290 | Line 243 | molecule{
243      position( 0.0, -0.81649, 0.51275 );
244    }
245    
246 <  rigidBody[0]{
294 <    
246 >  rigidBody[0]{    
247      members(0, 1, 2);
248    }
297
298  
299  cutoffGroup{
300    
301    members(0, 1, 2);
302  }
249   }
250  
251   molecule{

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