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root/OpenMD/branches/development/forceFields/Amber.frc
Revision: 1701
Committed: Thu Apr 5 19:37:58 2012 UTC (13 years, 1 month ago) by kstocke1
File size: 101051 byte(s)
Log Message:
Added files for fcc and pentagonal nanorod builders. Updated runMe in samples/builders to include nanorod builders.

File Contents

# User Rev Content
1 gezelter 1278 begin Options
2 cli2 1289 Name "Amber"
3     vdW-14-scale 0.5
4     electrostatic-14-scale 0.83333333333333333
5 gezelter 1278 end Options
6 gezelter 1270
7     begin BaseAtomTypes
8     //number name mass (amu)
9 cli2 1289 C 12.01
10     N 14.01
11     O 16.0
12     S 32.06
13     P 30.97
14     H 1.008
15 gezelter 1270 Li+ 6.940
16     Na+ 22.990
17     K+ 39.100
18     Rb+ 85.470
19     Cs+ 132.910
20 gezelter 1278 Mg+2 24.305
21     Ca+2 40.080
22     Zn+2 65.400
23 gezelter 1270 Cl- 35.450
24 gezelter 1363 EP 0.0
25 gezelter 1270 end BaseAtomTypes
26    
27    
28     begin AtomTypes
29     //name baseatomtype
30 cli2 1289 CT C
31     CA C
32     CM C
33     CC C
34     CV C
35     CW C
36     CR C
37     CB C
38     C* C
39     CN C
40     CK C
41     CQ C
42     NA N
43     NB N
44     NC N
45     N* N
46     N2 N
47     N3 N
48     OW O
49     OH O
50     OS O
51     O2 O
52     SH S
53     HW H
54     HO H
55     HS H
56     HA H
57     HC H
58     H1 H
59     H2 H
60     H3 H
61     HP H
62     H4 H
63     H5 H
64 gezelter 1270 GLY-N N
65     GLY-CA CT
66     GLY-C C
67     GLY-HN H
68     GLY-O O
69     GLY-HA H1
70     ALA-N N
71     ALA-CA CT
72     ALA-C C
73     ALA-HN H
74     ALA-O O
75     ALA-HA H1
76     ALA-CB CT
77     ALA-HB HC
78     VAL-N N
79     VAL-CA CT
80     VAL-C C
81     VAL-HN H
82     VAL-O O
83     VAL-HA H1
84     VAL-CB CT
85     VAL-HB HC
86 cli2 1289 VAL-CG CT
87     VAL-HG HC
88 gezelter 1270 LEU-N N
89     LEU-CA CT
90     LEU-C C
91     LEU-HN H
92     LEU-O O
93     LEU-HA H1
94     LEU-CB CT
95     LEU-HB HC
96     LEU-CG CT
97     LEU-HG HC
98 cli2 1289 LEU-CD CT
99     LEU-HD HC
100 gezelter 1270 ILE-N N
101     ILE-CA CT
102     ILE-C C
103     ILE-HN H
104     ILE-O O
105     ILE-HA H1
106     ILE-CB CT
107     ILE-HB HC
108     ILE-CG1 CT
109     ILE-HG1 HC
110     ILE-CG2 CT
111     ILE-HG2 HC
112     ILE-CD CT
113     ILE-HD HC
114     SER-N N
115     SER-CA CT
116     SER-C C
117     SER-HN H
118     SER-O O
119     SER-HA H1
120     SER-CB CT
121     SER-HB H1
122     SER-OG OH
123     SER-HG HO
124     THR-N N
125     THR-CA CT
126     THR-C C
127     THR-HN H
128     THR-O O
129     THR-HA H1
130     THR-CB CT
131     THR-HB H1
132     THR-OG1 OH
133     THR-HG1 HO
134     THR-CG2 CT
135     THR-HG2 HC
136     CYS-N N
137     CYS-CA CT
138     CYS-C C
139     CYS-HN H
140     CYS-O O
141     CYS-HA H1
142     CYS-CB CT
143     CYS-HB H1
144     CYS-SG SH
145     CYS-HG HS
146     CYX-N N
147     CYX-CA CT
148     CYX-C C
149     CYX-HN H
150     CYX-O O
151     CYX-HA H1
152     CYX-CB CT
153     CYX-HB H1
154     CYX-SG S
155     PRO-N N
156     PRO-CA CT
157     PRO-C C
158     PRO-O O
159     PRO-HA H1
160     PRO-CB CT
161     PRO-HB HC
162     PRO-CG CT
163     PRO-HG HC
164     PRO-CD CT
165     PRO-HD H1
166     PHE-N N
167     PHE-CA CT
168     PHE-C C
169     PHE-HN H
170     PHE-O O
171     PHE-HA H1
172     PHE-CB CT
173     PHE-HB HC
174     PHE-CG CA
175     PHE-CD CA
176     PHE-HD HA
177     PHE-CE CA
178     PHE-HE HA
179     PHE-CZ CA
180     PHE-HZ HA
181     TYR-N N
182     TYR-CA CT
183     TYR-C C
184     TYR-HN H
185     TYR-O O
186     TYR-HA H1
187     TYR-CB CT
188     TYR-HB HC
189     TYR-CG CA
190     TYR-CD CA
191     TYR-HD HA
192     TYR-CE CA
193     TYR-HE HA
194     TYR-CZ CA
195     TYR-OH OH
196 cli2 1289 TYR-HO HO
197 gezelter 1270 TRP-N N
198     TRP-CA CT
199     TRP-C C
200     TRP-HN H
201     TRP-O O
202     TRP-HA H1
203     TRP-CB CT
204     TRP-HB HC
205     TRP-CG C*
206     TRP-CD1 CW
207     TRP-HD1 H4
208     TRP-CD2 CB
209     TRP-NE1 NA
210     TRP-HE1 H
211     TRP-CE2 CN
212     TRP-CE3 CA
213     TRP-HE3 HA
214     TRP-CZ2 CA
215     TRP-HZ2 HA
216     TRP-CZ3 CA
217     TRP-HZ3 HA
218     TRP-CH2 CA
219     TRP-HH2 HA
220     HIS-N N
221     HIS-CA CT
222     HIS-C C
223     HIS-HN H
224     HIS-O O
225     HIS-HA H1
226     HIS-CB CT
227     HIS-HB HC
228     HIS-CG CC
229     HIS-ND1 NA
230     HIS-HD1 H
231     HIS-CD2 CW
232     HIS-HD2 H4
233     HIS-CE1 CR
234     HIS-HE1 H5
235     HIS-NE2 NA
236     HIS-HE2 H
237     HID-N N
238     HID-CA CT
239     HID-C C
240     HID-HN H
241     HID-O O
242     HID-HA H1
243     HID-CB CT
244     HID-HB HC
245     HID-CG CC
246     HID-ND1 NA
247     HID-HD1 H
248     HID-CD2 CV
249     HID-HD2 H4
250     HID-CE1 CR
251     HID-HE1 H5
252     HID-NE2 NB
253     HIE-N N
254     HIE-CA CT
255     HIE-C C
256     HIE-HN H
257     HIE-O O
258     HIE-HA H1
259     HIE-CB CT
260     HIE-HB HC
261     HIE-CG CC
262     HIE-ND1 NB
263     HIE-CD2 CW
264     HIE-HD2 H4
265     HIE-CE1 CR
266     HIE-HE1 H5
267     HIE-NE2 NA
268     HIE-HE2 H
269     ASP-N N
270     ASP-CA CT
271     ASP-C C
272     ASP-HN H
273     ASP-O O
274     ASP-HA H1
275     ASP-CB CT
276     ASP-HB HC
277     ASP-CG C
278     ASP-OD O2
279     ASN-N N
280     ASN-CA CT
281     ASN-C C
282     ASN-HN H
283     ASN-O O
284     ASN-HA H1
285     ASN-CB CT
286     ASN-HB HC
287     ASN-CG C
288     ASN-OD1 O
289     ASN-ND2 N
290     ASN-HD2 H
291     GLU-N N
292     GLU-CA CT
293     GLU-C C
294     GLU-HN H
295     GLU-O O
296     GLU-HA H1
297     GLU-CB CT
298     GLU-HB HC
299     GLU-CG CT
300     GLU-HG HC
301     GLU-CD C
302     GLU-OE O2
303     GLN-N N
304     GLN-CA CT
305     GLN-C C
306     GLN-HN H
307     GLN-O O
308     GLN-HA H1
309     GLN-CB CT
310     GLN-HB HC
311     GLN-CG CT
312     GLN-HG HC
313     GLN-CD C
314     GLN-OE1 O
315     GLN-NE2 N
316     GLN-HE2 H
317     MET-N N
318     MET-CA CT
319     MET-C C
320     MET-HN H
321     MET-O O
322     MET-HA H1
323     MET-CB CT
324     MET-HB HC
325     MET-CG CT
326     MET-HG H1
327     MET-SD S
328     MET-CE CT
329     MET-HE H1
330     LYS-N N
331     LYS-CA CT
332     LYS-C C
333     LYS-HN H
334     LYS-O O
335     LYS-HA H1
336     LYS-CB CT
337     LYS-HB HC
338     LYS-CG CT
339     LYS-HG HC
340     LYS-CD CT
341     LYS-HD HC
342     LYS-CE CT
343     LYS-HE HP
344     LYS-NZ N3
345     LYS-HZ H
346     ARG-N N
347     ARG-CA CT
348     ARG-C C
349     ARG-HN H
350     ARG-O O
351     ARG-HA H1
352     ARG-CB CT
353     ARG-HB HC
354     ARG-CG CT
355     ARG-HG HC
356     ARG-CD CT
357     ARG-HD H1
358     ARG-NE N2
359     ARG-HE H
360     ARG-CZ CA
361     ARG-NH N2
362     ARG-HH H
363     ORN-N N
364     ORN-CA CT
365     ORN-C C
366     ORN-HN H
367     ORN-O O
368     ORN-HA H1
369     ORN-CB CT
370     ORN-HB HC
371     ORN-CG CT
372     ORN-HG HC
373     ORN-CD CT
374     ORN-HD HP
375     ORN-NE N3
376     ORN-HE H
377     MAA-N N
378     MAA-CA CT
379     MAA-C C
380     MAA-HN H
381     MAA-O O
382     MAA-CB CT
383     MAA-HB HC
384     PCA-N N
385     PCA-CA CT
386     PCA-C C
387     PCA-HN H
388     PCA-O O
389     PCA-HA H1
390     PCA-CB CT
391     PCA-HB HC
392     PCA-CG CT
393     PCA-HG HC
394     PCA-CD C
395     PCA-OE O
396     FOR-C C
397     FOR-H H
398     FOR-O O
399     ACE-CA CT
400     ACE-HA HC
401     ACE-C C
402     ACE-O O
403 gezelter 1278 C-Term-N N
404     C-Term-H H
405     N-MeAmide-N N
406     N-MeAmide-H H
407     N-MeAmide-C CT
408     N-MeAmide-H1 H1
409 gezelter 1270 NGLY-N N3
410     NGLY-CA CT
411     NGLY-C C
412     NGLY-HN H
413     NGLY-O O
414     NGLY-HA H1
415     NALA-N N3
416     NALA-CA CT
417     NALA-C C
418     NALA-HN H
419     NALA-O O
420     NALA-HA H1
421     NVAL-N N3
422     NVAL-CA CT
423     NVAL-C C
424     NVAL-HN H
425     NVAL-O O
426     NVAL-HA H1
427     NLEU-N N3
428     NLEU-CA CT
429     NLEU-C C
430     NLEU-HN H
431     NLEU-O O
432     NLEU-HA H1
433     NILE-N N3
434     NILE-CA CT
435     NILE-C C
436     NILE-HN H
437     NILE-O O
438     NILE-HA H1
439     NSER-N N3
440     NSER-CA CT
441     NSER-C C
442     NSER-HN H
443     NSER-O O
444     NSER-HA H1
445     NTHR-N N3
446     NTHR-CA CT
447     NTHR-C C
448     NTHR-HN H
449     NTHR-O O
450     NTHR-HA H1
451     NCYS-N N3
452     NCYS-CA CT
453     NCYS-C C
454     NCYS-HN H
455     NCYS-O O
456     NCYS-HA H1
457     NCYX-N N3
458     NCYX-CA CT
459     NCYX-C C
460     NCYX-HN H
461     NCYX-O O
462     NCYX-HA H1
463     NPRO-N N3
464     NPRO-CA CT
465     NPRO-C C
466     NPRO-HN H
467     NPRO-O O
468     NPRO-HA H1
469     NPRO-CD CT
470     NPRO-HD HP
471     NPHE-N N3
472     NPHE-CA CT
473     NPHE-C C
474     NPHE-HN H
475     NPHE-O O
476     NPHE-HA H1
477     NTYR-N N3
478     NTYR-CA CT
479     NTYR-C C
480     NTYR-HN H
481     NTYR-O O
482     NTYR-HA H1
483     NTRP-N N3
484     NTRP-CA CT
485     NTRP-C C
486     NTRP-HN H
487     NTRP-O O
488     NTRP-HA H1
489     NHIS-N N3
490     NHIS-CA CT
491     NHIS-C C
492     NHIS-HN H
493     NHIS-O O
494     NHIS-HA H1
495     NHID-N N3
496     NHID-CA CT
497     NHID-C C
498     NHID-HN H
499     NHID-O O
500     NHID-HA H1
501     NHIE-N N3
502     NHIE-CA CT
503     NHIE-C C
504     NHIE-HN H
505     NHIE-O O
506     NHIE-HA H1
507     NASP-N N3
508     NASP-CA CT
509     NASP-C C
510     NASP-HN H
511     NASP-O O
512     NASP-HA H1
513     NASN-N N3
514     NASN-CA CT
515     NASN-C C
516     NASN-HN H
517     NASN-O O
518     NASN-HA H1
519     NGLU-N N3
520     NGLU-CA CT
521     NGLU-C C
522     NGLU-HN H
523     NGLU-O O
524     NGLU-HA H1
525 cli2 1289 NGLN-N N3
526     NGLN-CA CT
527     NGLN-C C
528     NGLN-HN H
529     NGLN-O O
530     NGLN-HA H1
531     NGLN-CB CT
532     NGLN-HB HC
533     NGLN-CG CT
534     NGLN-HG HC
535     NGLN-CD C
536     NGLN-OE1 O
537     NGLN-NE2 N
538     NGLN-HE2 H
539 gezelter 1270 NMET-N N3
540     NMET-CA CT
541     NMET-C C
542     NMET-HN H
543     NMET-O O
544     NMET-HA H1
545     NLYS-N N3
546     NLYS-CA CT
547     NLYS-C C
548     NLYS-HN H
549     NLYS-O O
550     NLYS-HA H1
551     NARG-N N3
552     NARG-CA CT
553     NARG-C C
554     NARG-HN H
555     NARG-O O
556     NARG-HA H1
557     NORN-N N3
558     NORN-CA CT
559     NORN-C C
560     NORN-HN H
561     NORN-O O
562     NORN-HA H1
563     NAIB-N N3
564     NAIB-CA CT
565     NAIB-C C
566     NAIB-HN H
567     NAIB-O O
568     CGLY-N N
569     CGLY-CA CT
570     CGLY-C C
571     CGLY-HN H
572     CGLY-OXT O2
573     CGLY-HA H1
574     CALA-N N
575     CALA-CA CT
576     CALA-C C
577     CALA-HN H
578     CALA-OXT O2
579     CALA-HA H1
580     CVAL-N N
581     CVAL-CA CT
582     CVAL-C C
583     CVAL-HN H
584     CVAL-OXT O2
585     CVAL-HA H1
586     CLEU-N N
587     CLEU-CA CT
588     CLEU-C C
589     CLEU-HN H
590     CLEU-OXT O2
591     CLEU-HA H1
592     CILE-N N
593     CILE-CA CT
594     CILE-C C
595     CILE-HN H
596     CILE-OXT O2
597     CILE-HA H1
598     CSER-N N
599     CSER-CA CT
600     CSER-C C
601     CSER-HN H
602     CSER-OXT O2
603     CSER-HA H1
604     CTHR-N N
605     CTHR-CA CT
606     CTHR-C C
607     CTHR-HN H
608     CTHR-OXT O2
609     CTHR-HA H1
610     CCYS-N N
611     CCYS-CA CT
612     CCYS-C C
613     CCYS-HN H
614     CCYS-OXT O2
615     CCYS-HA H1
616     CCYX-N N
617     CCYX-CA CT
618     CCYX-C C
619     CCYX-HN H
620     CCYX-OXT O2
621     CCYX-HA H1
622     CPRO-N N
623     CPRO-CA CT
624     CPRO-C C
625     CPRO-OXT O2
626 cli2 1289 CPRO-O O
627 gezelter 1270 CPRO-HA H1
628 cli2 1289 CPRO-CB CT
629     CPRO-HB HC
630     CPRO-CG CT
631     CPRO-HG HC
632     CPRO-CD CT
633     CPRO-HD H1
634 gezelter 1270 CPHE-N N
635     CPHE-CA CT
636     CPHE-C C
637     CPHE-HN H
638     CPHE-OXT O2
639     CPHE-HA H1
640     CTYR-N N
641     CTYR-CA CT
642     CTYR-C C
643     CTYR-HN H
644     CTYR-OXT O2
645     CTYR-HA H1
646     CTRP-N N
647     CTRP-CA CT
648     CTRP-C C
649     CTRP-HN H
650     CTRP-OXT O2
651     CTRP-HA H1
652     CHIS-N N
653     CHIS-CA CT
654     CHIS-C C
655     CHIS-HN H
656     CHIS-OXT O2
657     CHIS-HA H1
658     CHID-N N
659     CHID-CA CT
660     CHID-C C
661     CHID-HN H
662     CHID-OXT O2
663     CHID-HA H1
664     CHIE-N N
665     CHIE-CA CT
666     CHIE-C C
667     CHIE-HN H
668     CHIE-OXT O2
669     CHIE-HA H1
670     CASP-N N
671     CASP-CA CT
672     CASP-C C
673     CASP-HN H
674     CASP-OXT O2
675     CASP-HA H1
676     CASN-N N
677     CASN-CA CT
678     CASN-C C
679     CASN-HN H
680     CASN-OXT O2
681     CASN-HA H1
682     CGLU-N N
683     CGLU-CA CT
684     CGLU-C C
685     CGLU-HN H
686     CGLU-OXT O2
687     CGLU-HA H1
688     CGLN-N N
689     CGLN-CA CT
690     CGLN-C C
691     CGLN-HN H
692     CGLN-OXT O2
693     CGLN-HA H1
694     CMET-N N
695     CMET-CA CT
696     CMET-C C
697     CMET-HN H
698     CMET-OXT O2
699     CMET-HA H1
700     CLYS-N N
701     CLYS-CA CT
702     CLYS-C C
703     CLYS-HN H
704     CLYS-OXT O2
705     CLYS-HA H1
706     CARG-N N
707     CARG-CA CT
708     CARG-C C
709     CARG-HN H
710     CARG-OXT O2
711     CARG-HA H1
712     CORN-N N
713     CORN-CA CT
714     CORN-C C
715     CORN-HN H
716     CORN-OXT O2
717     CORN-HA H1
718     CAIB-N N
719     CAIB-CA CT
720     CAIB-C C
721     CAIB-HN H
722     CAIB-OXT O2
723     RA-O5' OS
724     RA-C5' CT
725     RA-H5'1 H1
726     RA-H5'2 H1
727     RA-C4' CT
728     RA-H4' H1
729     RA-O4' OS
730     RA-C1' CT
731     RA-H1' H2
732     RA-C3' CT
733     RA-H3' H1
734     RA-C2' CT
735     RA-H2'1 H1
736     RA-O2' OH
737     RA-HO'2 HO
738     RA-O3' OS
739     RA-N9 N*
740     RA-C4 CB
741     RA-C5 CB
742     RA-N7 NB
743     RA-C8 CK
744     RA-N3 NC
745     RA-C2 CQ
746     RA-N1 NC
747     RA-C6 CA
748     RA-H2 H5
749     RA-N6 N2
750     RA-H61 H
751     RA-H62 H
752     RA-H8 H5
753     RG-O5' OS
754     RG-C5' CT
755     RG-H5'1 H1
756     RG-H5'2 H1
757     RG-C4' CT
758     RG-H4' H1
759     RG-O4' OS
760     RG-C1' CT
761     RG-H1' H2
762     RG-C3' CT
763     RG-H3' H1
764     RG-C2' CT
765     RG-H2'1 H1
766     RG-O2' OH
767     RG-HO'2 HO
768     RG-O3' OS
769     RG-N9 N*
770     RG-C4 CB
771     RG-C5 CB
772     RG-N7 NB
773     RG-C8 CK
774     RG-N3 NC
775     RG-C2 CA
776     RG-N1 NA
777     RG-C6 C
778     RG-H1 H
779     RG-N2 N2
780     RG-H21 H
781     RG-H22 H
782     RG-O6 O
783     RG-H8 H5
784     RC-O5' OS
785     RC-C5' CT
786     RC-H5'1 H1
787     RC-H5'2 H1
788     RC-C4' CT
789     RC-H4' H1
790     RC-O4' OS
791     RC-C1' CT
792     RC-H1' H2
793     RC-C3' CT
794     RC-H3' H1
795     RC-C2' CT
796     RC-H2'1 H1
797     RC-O2' OH
798     RC-HO'2 HO
799     RC-O3' OS
800     RC-N1 N*
801     RC-C2 C
802     RC-N3 NC
803     RC-C4 CA
804     RC-C5 CM
805     RC-C6 CM
806     RC-O2 O
807     RC-N4 N2
808     RC-H41 H
809     RC-H42 H
810     RC-H5 HA
811     RC-H6 H4
812     RU-O5' OS
813     RU-C5' CT
814     RU-H5'1 H1
815     RU-H5'2 H1
816     RU-C4' CT
817     RU-H4' H1
818     RU-O4' OS
819     RU-C1' CT
820     RU-H1' H2
821     RU-C3' CT
822     RU-H3' H1
823     RU-C2' CT
824     RU-H2'1 H1
825     RU-O2' OH
826     RU-HO'2 HO
827     RU-O3' OS
828     RU-N1 N*
829     RU-C2 C
830     RU-N3 NA
831     RU-C4 C
832     RU-C5 CM
833     RU-C6 CM
834     RU-O2 O
835     RU-H3 H
836     RU-O4 O
837     RU-H5 HA
838     RU-H6 H4
839     DA-O5' OS
840     DA-C5' CT
841     DA-H5'1 H1
842     DA-H5'2 H1
843     DA-C4' CT
844     DA-H4' H1
845     DA-O4' OS
846     DA-C1' CT
847     DA-H1' H2
848     DA-C3' CT
849     DA-H3' H1
850     DA-C2' CT
851     DA-H2'1 HC
852     DA-H2'2 HC
853     DA-O3' OS
854     DA-N9 N*
855     DA-C4 CB
856     DA-C5 CB
857     DA-N7 NB
858     DA-C8 CK
859     DA-N3 NC
860     DA-C2 CQ
861     DA-N1 NC
862     DA-C6 CA
863     DA-H2 H5
864     DA-N6 N2
865     DA-H61 H
866     DA-H62 H
867     DA-H8 H5
868     DG-O5' OS
869     DG-C5' CT
870     DG-H5'1 H1
871     DG-H5'2 H1
872     DG-C4' CT
873     DG-H4' H1
874     DG-O4' OS
875     DG-C1' CT
876     DG-H1' H2
877     DG-C3' CT
878     DG-H3' H1
879     DG-C2' CT
880     DG-H2'1 HC
881     DG-H2'2 HC
882     DG-O3' OS
883     DG-N9 N*
884     DG-C4 CB
885     DG-C5 CB
886     DG-N7 NB
887     DG-C8 CK
888     DG-N3 NC
889     DG-C2 CA
890     DG-N1 NA
891     DG-C6 C
892     DG-H1 H
893     DG-N2 N2
894     DG-H21 H
895     DG-H22 H
896     DG-O6 O
897     DG-H8 H5
898     DC-O5' OS
899     DC-C5' CT
900     DC-H5'1 H1
901     DC-H5'2 H1
902     DC-C4' CT
903     DC-H4' H1
904     DC-O4' OS
905     DC-C1' CT
906     DC-H1' H2
907     DC-C3' CT
908     DC-H3' H1
909     DC-C2' CT
910     DC-H2'1 HC
911     DC-H2'2 HC
912     DC-O3' OS
913     DC-N1 N*
914     DC-C2 C
915     DC-N3 NC
916     DC-C4 CA
917     DC-C5 CM
918     DC-C6 CM
919     DC-O2 O
920     DC-N4 N2
921     DC-H41 H
922     DC-H42 H
923     DC-H5 HA
924     DC-H6 H4
925     DT-O5' OS
926     DT-C5' CT
927     DT-H5'1 H1
928     DT-H5'2 H1
929     DT-C4' CT
930     DT-H4' H1
931     DT-O4' OS
932     DT-C1' CT
933     DT-H1' H2
934     DT-C3' CT
935     DT-H3' H1
936     DT-C2' CT
937     DT-H2'1 HC
938     DT-H2'2 HC
939     DT-O3' OS
940     DT-N1 N*
941     DT-C2 C
942     DT-N3 NA
943     DT-C4 C
944     DT-C5 CM
945     DT-C6 CM
946     DT-O2 O
947     DT-H3 H
948     DT-O4 O
949     DT-C7 CT
950     DT-H7 HC
951     DT-H6 H4
952 gezelter 1278 R-Phosphodiester-P P
953     R-Phosphodiester-O O2
954 gezelter 1270 R5H-O5' OH
955     R5H-H5T HO
956     R5P-O5' OS
957     R5P-P P
958     R5P-OP O2
959     R3H-O3' OH
960     R3H-H3T HO
961     R3P-O3' OS
962     R3P-P P
963     R3P-OP O2
964 gezelter 1278 D-Phosphodiester-P P
965     D-Phosphodiester-O O2
966 gezelter 1270 D5H-O5' OH
967     D5H-H5T HO
968     D5P-O5' OS
969     D5P-P P
970     D5P-OP O2
971     D3H-O3' OH
972     D3H-H3T HO
973     D3P-O3' OS
974     D3P-P P
975     D3P-OP O2
976 gezelter 1278 TIP3P-O OW
977     TIP3P-H HW
978 gezelter 1363 O_TIP3P OW
979     O_TIP4P OW
980     O_TIP4P-Ew OW
981     O_TIP5P OW
982     O_TIP5P-E OW
983     O_SPCE OW
984 kstocke1 1701 O_SPC OW
985     O_POL3 OW
986 gezelter 1363 H_TIP3P HW
987     H_TIP4P HW
988     H_TIP4P-Ew HW
989     H_TIP5P HW
990     H_SPCE HW
991     H_SPC HW
992 kstocke1 1701 H_POL3 HW
993 gezelter 1363 EP_TIP4P EP
994     EP_TIP4P-Ew EP
995     EP_TIP5P EP
996 gezelter 1270 end AtomTypes
997    
998    
999     begin ChargeAtomTypes
1000     //name charge
1001 gezelter 1418 HO 0.45
1002     OH -0.5.8
1003     O2 -0.5
1004     C 0.55
1005 gezelter 1270 GLY-N -0.4157
1006     GLY-CA -0.0252
1007     GLY-C 0.5973
1008     GLY-HN 0.2719
1009     GLY-O -0.5679
1010     GLY-HA 0.0698
1011     ALA-N -0.4157
1012     ALA-CA 0.0337
1013     ALA-C 0.5973
1014     ALA-HN 0.2719
1015     ALA-O -0.5679
1016     ALA-HA 0.0823
1017     ALA-CB -0.1825
1018     ALA-HB 0.0603
1019     VAL-N -0.4157
1020     VAL-CA -0.0875
1021     VAL-C 0.5973
1022     VAL-HN 0.2719
1023     VAL-O -0.5679
1024     VAL-HA 0.0969
1025     VAL-CB 0.2985
1026     VAL-HB -0.0297
1027 cli2 1289 VAL-CG -0.3192
1028     VAL-HG 0.0791
1029 gezelter 1270 LEU-N -0.4157
1030     LEU-CA -0.0518
1031     LEU-C 0.5973
1032     LEU-HN 0.2719
1033     LEU-O -0.5679
1034     LEU-HA 0.0922
1035     LEU-CB -0.1102
1036     LEU-HB 0.0457
1037     LEU-CG 0.3531
1038     LEU-HG -0.0361
1039 cli2 1289 LEU-CD -0.4121
1040     LEU-HD 0.1000
1041 gezelter 1270 ILE-N -0.4157
1042     ILE-CA -0.0597
1043     ILE-C 0.5973
1044     ILE-HN 0.2719
1045     ILE-O -0.5679
1046     ILE-HA 0.0869
1047     ILE-CB 0.1303
1048     ILE-HB 0.0187
1049     ILE-CG1 -0.0430
1050     ILE-HG1 0.0236
1051     ILE-CG2 -0.3204
1052     ILE-HG2 0.0882
1053     ILE-CD -0.0660
1054     ILE-HD 0.0186
1055     SER-N -0.4157
1056     SER-CA -0.0249
1057     SER-C 0.5973
1058     SER-HN 0.2719
1059     SER-O -0.5679
1060     SER-HA 0.0843
1061     SER-CB 0.2117
1062     SER-HB 0.0352
1063     SER-OG -0.6546
1064     SER-HG 0.4275
1065     THR-N -0.4157
1066     THR-CA -0.0389
1067     THR-C 0.5973
1068     THR-HN 0.2719
1069     THR-O -0.5679
1070     THR-HA 0.1007
1071     THR-CB 0.3654
1072     THR-HB 0.0043
1073     THR-OG1 -0.6761
1074     THR-HG1 0.4102
1075     THR-CG2 -0.2438
1076     THR-HG2 0.0642
1077     CYS-N -0.4157
1078     CYS-CA 0.0213
1079     CYS-C 0.5973
1080     CYS-HN 0.2719
1081     CYS-O -0.5679
1082     CYS-HA 0.1124
1083     CYS-CB -0.1231
1084     CYS-HB 0.1112
1085     CYS-SG -0.3119
1086     CYS-HG 0.1933
1087     CYX-N -0.4157
1088     CYX-CA 0.0429
1089     CYX-C 0.5973
1090     CYX-HN 0.2719
1091     CYX-O -0.5679
1092     CYX-HA 0.0766
1093     CYX-CB -0.0790
1094     CYX-HB 0.0910
1095     CYX-SG -0.1081
1096     PRO-N -0.2548
1097     PRO-CA -0.0266
1098     PRO-C 0.5896
1099     PRO-O -0.5748
1100     PRO-HA 0.0641
1101     PRO-CB -0.0070
1102     PRO-HB 0.0253
1103     PRO-CG 0.0189
1104     PRO-HG 0.0213
1105     PRO-CD 0.0192
1106     PRO-HD 0.0391
1107     PHE-N -0.4157
1108     PHE-CA -0.0024
1109     PHE-C 0.5973
1110     PHE-HN 0.2719
1111     PHE-O -0.5679
1112     PHE-HA 0.0978
1113     PHE-CB -0.0343
1114     PHE-HB 0.0295
1115     PHE-CG 0.0118
1116     PHE-CD -0.1256
1117     PHE-HD 0.1330
1118     PHE-CE -0.1704
1119     PHE-HE 0.1430
1120     PHE-CZ -0.1072
1121     PHE-HZ 0.1297
1122     TYR-N -0.4157
1123     TYR-CA -0.0014
1124     TYR-C 0.5973
1125     TYR-HN 0.2719
1126     TYR-O -0.5679
1127     TYR-HA 0.0876
1128     TYR-CB -0.0152
1129     TYR-HB 0.0295
1130     TYR-CG -0.0011
1131     TYR-CD -0.1906
1132     TYR-HD 0.1699
1133     TYR-CE -0.2341
1134     TYR-HE 0.1656
1135     TYR-CZ 0.3226
1136     TYR-OH -0.5579
1137 cli2 1289 TYR-HO 0.3992
1138 gezelter 1270 TRP-N -0.4157
1139     TRP-CA -0.0275
1140     TRP-C 0.5973
1141     TRP-HN 0.2719
1142     TRP-O -0.5679
1143     TRP-HA 0.1123
1144     TRP-CB -0.0050
1145     TRP-HB 0.0339
1146     TRP-CG -0.1415
1147     TRP-CD1 -0.1638
1148     TRP-HD1 0.2062
1149     TRP-CD2 0.1243
1150     TRP-NE1 -0.3418
1151     TRP-HE1 0.3412
1152     TRP-CE2 0.1380
1153     TRP-CE3 -0.2387
1154     TRP-HE3 0.1700
1155     TRP-CZ2 -0.2601
1156     TRP-HZ2 0.1572
1157     TRP-CZ3 -0.1972
1158     TRP-HZ3 0.1447
1159     TRP-CH2 -0.1134
1160     TRP-HH2 0.1417
1161     HIS-N -0.3479
1162     HIS-CA -0.1354
1163     HIS-C 0.7341
1164     HIS-HN 0.2747
1165     HIS-O -0.5894
1166     HIS-HA 0.1212
1167     HIS-CB -0.0414
1168     HIS-HB 0.0810
1169     HIS-CG -0.0012
1170     HIS-ND1 -0.1513
1171     HIS-HD1 0.3866
1172     HIS-CD2 -0.1141
1173     HIS-HD2 0.2317
1174     HIS-CE1 -0.0170
1175     HIS-HE1 0.2681
1176     HIS-NE2 -0.1718
1177     HIS-HE2 0.3911
1178     HID-N -0.4157
1179     HID-CA 0.0188
1180     HID-C 0.5973
1181     HID-HN 0.2719
1182     HID-O -0.5679
1183     HID-HA 0.0881
1184     HID-CB -0.0462
1185     HID-HB 0.0402
1186     HID-CG -0.0266
1187     HID-ND1 -0.3811
1188     HID-HD1 0.3649
1189     HID-CD2 0.1292
1190     HID-HD2 0.1147
1191     HID-CE1 0.2057
1192     HID-HE1 0.1392
1193     HID-NE2 -0.5727
1194     HIE-N -0.4157
1195     HIE-CA -0.0581
1196     HIE-C 0.5973
1197     HIE-HN 0.2719
1198     HIE-O -0.5679
1199     HIE-HA 0.1360
1200     HIE-CB -0.0074
1201     HIE-HB 0.0367
1202     HIE-CG 0.1868
1203     HIE-ND1 -0.5432
1204     HIE-CD2 -0.2207
1205     HIE-HD2 0.1862
1206     HIE-CE1 0.1635
1207     HIE-HE1 0.1435
1208     HIE-NE2 -0.2795
1209     HIE-HE2 0.3339
1210     ASP-N -0.5163
1211     ASP-CA 0.0381
1212     ASP-C 0.5366
1213     ASP-HN 0.2936
1214     ASP-O -0.5819
1215     ASP-HA 0.0880
1216     ASP-CB -0.0303
1217     ASP-HB -0.0122
1218     ASP-CG 0.7994
1219     ASP-OD -0.8014
1220     ASN-N -0.4157
1221     ASN-CA 0.0143
1222     ASN-C 0.5973
1223     ASN-HN 0.2719
1224     ASN-O -0.5679
1225     ASN-HA 0.1048
1226     ASN-CB -0.2041
1227     ASN-HB 0.0797
1228     ASN-CG 0.7130
1229     ASN-OD1 -0.5931
1230     ASN-ND2 -0.9191
1231     ASN-HD2 0.4196
1232     GLU-N -0.5163
1233     GLU-CA 0.0397
1234     GLU-C 0.5366
1235     GLU-HN 0.2936
1236     GLU-O -0.5819
1237     GLU-HA 0.1105
1238     GLU-CB 0.0560
1239     GLU-HB -0.0173
1240     GLU-CG 0.0136
1241     GLU-HG -0.0425
1242     GLU-CD 0.8054
1243     GLU-OE -0.8188
1244     GLN-N -0.4157
1245     GLN-CA -0.0031
1246     GLN-C 0.5973
1247     GLN-HN 0.2719
1248     GLN-O -0.5679
1249     GLN-HA 0.0850
1250     GLN-CB -0.0036
1251     GLN-HB 0.0171
1252     GLN-CG -0.0645
1253     GLN-HG 0.0352
1254     GLN-CD 0.6951
1255     GLN-OE1 -0.6086
1256     GLN-NE2 -0.9407
1257     GLN-HE2 0.4251
1258     MET-N -0.4157
1259     MET-CA -0.0237
1260     MET-C 0.5973
1261     MET-HN 0.2719
1262     MET-O -0.5679
1263     MET-HA 0.0880
1264     MET-CB 0.0342
1265     MET-HB 0.0241
1266     MET-CG 0.0018
1267     MET-HG 0.0440
1268     MET-SD -0.2737
1269     MET-CE -0.0536
1270     MET-HE 0.0684
1271     LYS-N -0.3479
1272     LYS-CA -0.2400
1273     LYS-C 0.7341
1274     LYS-HN 0.2747
1275     LYS-O -0.5894
1276     LYS-HA 0.1426
1277     LYS-CB -0.0094
1278     LYS-HB 0.0362
1279     LYS-CG 0.0187
1280     LYS-HG 0.0103
1281     LYS-CD -0.0479
1282     LYS-HD 0.0621
1283     LYS-CE -0.0143
1284     LYS-HE 0.1135
1285     LYS-NZ -0.3854
1286     LYS-HZ 0.3400
1287     ARG-N -0.3479
1288     ARG-CA -0.2637
1289     ARG-C 0.7341
1290     ARG-HN 0.2747
1291     ARG-O -0.5894
1292     ARG-HA 0.1560
1293     ARG-CB -0.0007
1294     ARG-HB 0.0327
1295     ARG-CG 0.0390
1296     ARG-HG 0.0285
1297     ARG-CD 0.0486
1298     ARG-HD 0.0687
1299     ARG-NE -0.5295
1300     ARG-HE 0.3456
1301     ARG-CZ 0.8076
1302     ARG-NH -0.8627
1303     ARG-HH 0.4478
1304     ORN-N -0.3479
1305     ORN-CA -0.2400
1306     ORN-C 0.7341
1307     ORN-HN 0.2747
1308     ORN-O -0.5894
1309     ORN-HA 0.1426
1310     ORN-CB 0.0099
1311     ORN-HB 0.0362
1312     ORN-CG -0.0279
1313     ORN-HG 0.0621
1314     ORN-CD -0.0143
1315     ORN-HD 0.1135
1316     ORN-NE -0.3854
1317     ORN-HE 0.3400
1318     MAA-N -0.4157
1319     MAA-CA 0.1032
1320     MAA-C 0.5973
1321     MAA-HN 0.2719
1322     MAA-O -0.5679
1323     MAA-CB -0.2503
1324     MAA-HB 0.0853
1325     PCA-N -0.4157
1326     PCA-CA -0.0371
1327     PCA-C 0.5973
1328     PCA-HN 0.2719
1329     PCA-O -0.5679
1330     PCA-HA 0.0850
1331     PCA-CB -0.0036
1332     PCA-HB 0.0171
1333     PCA-CG -0.0645
1334     PCA-HG 0.0352
1335     PCA-CD 0.6000
1336     PCA-OE -0.5700
1337     FOR-C 0.5500
1338     FOR-H 0.0000
1339     FOR-O -0.5500
1340     ACE-CA -0.3662
1341     ACE-HA 0.1123
1342     ACE-C 0.5972
1343     ACE-O -0.5679
1344 gezelter 1278 C-Term-N -0.8400
1345     C-Term-H 0.4200
1346     N-MeAmide-N -0.4157
1347     N-MeAmide-H 0.2719
1348     N-MeAmide-C -0.1490
1349     N-MeAmide-H1 0.0976
1350 gezelter 1270 NGLY-N 0.2943
1351     NGLY-CA -0.0100
1352     NGLY-C 0.6163
1353     NGLY-HN 0.1642
1354     NGLY-O -0.5722
1355     NGLY-HA 0.0895
1356     NALA-N 0.1414
1357     NALA-CA 0.1281
1358     NALA-C 0.6163
1359     NALA-HN 0.1997
1360     NALA-O -0.5722
1361     NALA-HA 0.0889
1362     NVAL-N 0.0577
1363     NVAL-CA 0.0023
1364     NVAL-C 0.6163
1365     NVAL-HN 0.2272
1366     NVAL-O -0.5722
1367     NVAL-HA 0.1093
1368     NLEU-N 0.1010
1369     NLEU-CA 0.0343
1370     NLEU-C 0.6123
1371     NLEU-HN 0.2148
1372     NLEU-O -0.5713
1373     NLEU-HA 0.1053
1374     NILE-N 0.0311
1375     NILE-CA 0.0389
1376     NILE-C 0.6123
1377     NILE-HN 0.2329
1378     NILE-O -0.5713
1379     NILE-HA 0.1031
1380     NSER-N 0.1849
1381     NSER-CA 0.0684
1382     NSER-C 0.6163
1383     NSER-HN 0.1898
1384     NSER-O -0.5722
1385     NSER-HA 0.0782
1386     NTHR-N 0.1812
1387     NTHR-CA 0.0332
1388     NTHR-C 0.6163
1389     NTHR-HN 0.1934
1390     NTHR-O -0.5722
1391     NTHR-HA 0.1087
1392     NCYS-N 0.1325
1393     NCYS-CA 0.0978
1394     NCYS-C 0.6123
1395     NCYS-HN 0.2023
1396     NCYS-O -0.5713
1397     NCYS-HA 0.1411
1398     NCYX-N 0.2096
1399     NCYX-CA 0.1138
1400     NCYX-C 0.6163
1401     NCYX-HN 0.1815
1402     NCYX-O -0.5713
1403     NCYX-HA 0.0922
1404     NPRO-N -0.2020
1405     NPRO-CA 0.1589
1406     NPRO-C 0.5260
1407     NPRO-HN 0.3120
1408     NPRO-O -0.5000
1409     NPRO-HA 0.1000
1410     NPRO-CD -0.0120
1411     NPRO-HD 0.1000
1412     NPHE-N 0.1737
1413     NPHE-CA 0.0859
1414     NPHE-C 0.6123
1415     NPHE-HN 0.1921
1416     NPHE-O -0.5713
1417     NPHE-HA 0.1041
1418     NTYR-N 0.1940
1419     NTYR-CA 0.0766
1420     NTYR-C 0.6123
1421     NTYR-HN 0.1873
1422     NTYR-O -0.5713
1423     NTYR-HA 0.0983
1424     NTRP-N 0.1913
1425     NTRP-CA 0.0555
1426     NTRP-C 0.6123
1427     NTRP-HN 0.1888
1428     NTRP-O -0.5713
1429     NTRP-HA 0.1162
1430     NHIS-N 0.2560
1431     NHIS-CA 0.0653
1432     NHIS-C 0.7214
1433     NHIS-HN 0.1704
1434     NHIS-O -0.6013
1435     NHIS-HA 0.1047
1436     NHID-N 0.1542
1437     NHID-CA 0.1126
1438     NHID-C 0.6123
1439     NHID-HN 0.1963
1440     NHID-O -0.5713
1441     NHID-HA 0.0958
1442     NHIE-N 0.1472
1443     NHIE-CA 0.0325
1444     NHIE-C 0.6123
1445     NHIE-HN 0.2016
1446     NHIE-O -0.5713
1447     NHIE-HA 0.1380
1448     NASP-N 0.0782
1449     NASP-CA 0.0326
1450     NASP-C 0.5621
1451     NASP-HN 0.2200
1452     NASP-O -0.5889
1453     NASP-HA 0.1141
1454     NASN-N 0.1801
1455     NASN-CA 0.0811
1456     NASN-C 0.6163
1457     NASN-HN 0.1921
1458     NASN-O -0.5722
1459     NASN-HA 0.1231
1460     NGLU-N 0.0017
1461     NGLU-CA 0.0698
1462     NGLU-C 0.5621
1463     NGLU-HN 0.2391
1464     NGLU-O -0.5889
1465     NGLU-HA 0.1202
1466 cli2 1289 NGLN-N 0.1493
1467     NGLN-CA 0.0769
1468     NGLN-C 0.6123
1469     NGLN-HN 0.1996
1470     NGLN-O -0.5713
1471     NGLN-HA 0.1015
1472 gezelter 1270 NMET-N 0.1592
1473     NMET-CA 0.0429
1474     NMET-C 0.6123
1475     NMET-HN 0.1984
1476     NMET-O -0.5713
1477     NMET-HA 0.1116
1478     NLYS-N 0.0966
1479     NLYS-CA -0.0101
1480     NLYS-C 0.7214
1481     NLYS-HN 0.2165
1482     NLYS-O -0.6013
1483     NLYS-HA 0.1180
1484     NARG-N 0.1305
1485     NARG-CA -0.0359
1486     NARG-C 0.7214
1487     NARG-HN 0.2083
1488     NARG-O -0.6013
1489     NARG-HA 0.1242
1490     NORN-N 0.0966
1491     NORN-CA -0.0101
1492     NORN-C 0.7214
1493     NORN-HN 0.2165
1494     NORN-O -0.6013
1495     NORN-HA 0.1180
1496     NAIB-N 0.1000
1497     NAIB-CA 0.2447
1498     NAIB-C 0.6163
1499     NAIB-HN 0.2000
1500     NAIB-O -0.5722
1501     CGLY-N -0.3821
1502     CGLY-CA -0.2493
1503     CGLY-C 0.7231
1504     CGLY-HN 0.2681
1505     CGLY-OXT -0.7855
1506     CGLY-HA 0.1056
1507     CALA-N -0.3821
1508     CALA-CA -0.1532
1509     CALA-C 0.7731
1510     CALA-HN 0.2681
1511     CALA-OXT -0.8055
1512     CALA-HA 0.1067
1513     CVAL-N -0.3821
1514     CVAL-CA -0.3352
1515     CVAL-C 0.8350
1516     CVAL-HN 0.2681
1517     CVAL-OXT -0.8173
1518     CVAL-HA 0.1438
1519     CLEU-N -0.3821
1520     CLEU-CA -0.2874
1521     CLEU-C 0.8326
1522     CLEU-HN 0.2681
1523     CLEU-OXT -0.8199
1524     CLEU-HA 0.1346
1525     CILE-N -0.3821
1526     CILE-CA -0.3070
1527     CILE-C 0.8343
1528     CILE-HN 0.2681
1529     CILE-OXT -0.8190
1530     CILE-HA 0.1375
1531     CSER-N -0.3821
1532     CSER-CA -0.2563
1533     CSER-C 0.8113
1534     CSER-HN 0.2681
1535     CSER-OXT -0.8132
1536     CSER-HA 0.1304
1537     CTHR-N -0.3821
1538     CTHR-CA -0.2315
1539     CTHR-C 0.7810
1540     CTHR-HN 0.2681
1541     CTHR-OXT -0.8044
1542     CTHR-HA 0.1207
1543     CCYS-N -0.3821
1544     CCYS-CA -0.1598
1545     CCYS-C 0.7497
1546     CCYS-HN 0.2681
1547     CCYS-OXT -0.7981
1548     CCYS-HA 0.1396
1549     CCYX-N -0.3821
1550     CCYX-CA -0.1283
1551     CCYX-C 0.7618
1552     CCYX-HN 0.2681
1553     CCYX-OXT -0.8041
1554     CCYX-HA 0.0938
1555     CPRO-N -0.2802
1556     CPRO-CA -0.1236
1557     CPRO-C 0.6631
1558     CPRO-OXT -0.7697
1559     CPRO-HA 0.0776
1560     CPHE-N -0.3821
1561     CPHE-CA -0.1756
1562     CPHE-C 0.7660
1563     CPHE-HN 0.2681
1564     CPHE-OXT -0.8026
1565     CPHE-HA 0.1098
1566     CTYR-N -0.3821
1567     CTYR-CA -0.1911
1568     CTYR-C 0.7817
1569     CTYR-HN 0.2681
1570     CTYR-OXT -0.8070
1571     CTYR-HA 0.1092
1572     CTRP-N -0.3821
1573     CTRP-CA -0.2064
1574     CTRP-C 0.7658
1575     CTRP-HN 0.2681
1576     CTRP-OXT -0.8011
1577     CTRP-HA 0.1272
1578     CHIS-N -0.3481
1579     CHIS-CA -0.1503
1580     CHIS-C 0.8032
1581     CHIS-HN 0.2764
1582     CHIS-OXT -0.8177
1583     CHIS-HA 0.1115
1584     CHID-N -0.3821
1585     CHID-CA -0.1618
1586     CHID-C 0.7615
1587     CHID-HN 0.2681
1588     CHID-OXT -0.8016
1589     CHID-HA 0.1100
1590     CHIE-N -0.3821
1591     CHIE-CA -0.2661
1592     CHIE-C 0.7916
1593     CHIE-HN 0.2681
1594     CHIE-OXT -0.8065
1595     CHIE-HA 0.1650
1596     CASP-N -0.5192
1597     CASP-CA -0.1810
1598     CASP-C 0.7256
1599     CASP-HN 0.3055
1600     CASP-OXT -0.7887
1601     CASP-HA 0.1046
1602     CASN-N -0.3821
1603     CASN-CA -0.1927
1604     CASN-C 0.8050
1605     CASN-HN 0.2681
1606     CASN-OXT -0.8147
1607     CASN-HA 0.1358
1608     CGLU-N -0.5192
1609     CGLU-CA -0.2000
1610     CGLU-C 0.7420
1611     CGLU-HN 0.3055
1612     CGLU-OXT -0.7930
1613     CGLU-HA 0.1399
1614     CGLN-N -0.3821
1615     CGLN-CA -0.2108
1616     CGLN-C 0.7775
1617     CGLN-HN 0.2681
1618     CGLN-OXT -0.8042
1619     CGLN-HA 0.1232
1620     CMET-N -0.3821
1621     CMET-CA -0.2441
1622     CMET-C 0.8013
1623     CMET-HN 0.2681
1624     CMET-OXT -0.8105
1625     CMET-HA 0.1277
1626     CLYS-N -0.3481
1627     CLYS-CA -0.2964
1628     CLYS-C 0.8488
1629     CLYS-HN 0.2764
1630     CLYS-OXT -0.8252
1631     CLYS-HA 0.1438
1632     CARG-N -0.3481
1633     CARG-CA -0.3117
1634     CARG-C 0.8557
1635     CARG-HN 0.2764
1636     CARG-OXT -0.8266
1637     CARG-HA 0.1447
1638     CORN-N -0.3481
1639     CORN-CA -0.2964
1640     CORN-C 0.8488
1641     CORN-HN 0.2764
1642     CORN-OXT -0.8252
1643     CORN-HA 0.1438
1644     CAIB-N -0.3821
1645     CAIB-CA -0.0572
1646     CAIB-C 0.8000
1647     CAIB-HN 0.2681
1648     CAIB-OXT -0.8200
1649     RA-O5' -0.4989
1650     RA-C5' 0.0558
1651     RA-H5'1 0.0679
1652     RA-H5'2 0.0679
1653     RA-C4' 0.1065
1654     RA-H4' 0.1174
1655     RA-O4' -0.3548
1656     RA-C1' 0.0394
1657     RA-H1' 0.2007
1658     RA-C3' 0.2022
1659     RA-H3' 0.0615
1660     RA-C2' 0.0670
1661     RA-H2'1 0.0972
1662     RA-O2' -0.6139
1663     RA-HO'2 0.4186
1664     RA-O3' -0.5246
1665     RA-N9 -0.0251
1666     RA-C4 0.3053
1667     RA-C5 0.0515
1668     RA-N7 -0.6073
1669     RA-C8 0.2006
1670     RA-N3 -0.6997
1671     RA-C2 0.5875
1672     RA-N1 -0.7615
1673     RA-C6 0.7009
1674     RA-H2 0.0473
1675     RA-N6 -0.9019
1676     RA-H61 0.4115
1677     RA-H62 0.4115
1678     RA-H8 0.1553
1679     RG-O5' -0.4989
1680     RG-C5' 0.0558
1681     RG-H5'1 0.0679
1682     RG-H5'2 0.0679
1683     RG-C4' 0.1065
1684     RG-H4' 0.1174
1685     RG-O4' -0.3548
1686     RG-C1' 0.0191
1687     RG-H1' 0.2006
1688     RG-C3' 0.2022
1689     RG-H3' 0.0615
1690     RG-C2' 0.0670
1691     RG-H2'1 0.0972
1692     RG-O2' -0.6139
1693     RG-HO'2 0.4186
1694     RG-O3' -0.5246
1695     RG-N9 0.0492
1696     RG-C4 0.1222
1697     RG-C5 0.1744
1698     RG-N7 -0.5709
1699     RG-C8 0.1374
1700     RG-N3 -0.6323
1701     RG-C2 0.7657
1702     RG-N1 -0.4787
1703     RG-C6 0.4770
1704     RG-H1 0.3424
1705     RG-N2 -0.9672
1706     RG-H21 0.4364
1707     RG-H22 0.4364
1708     RG-O6 -0.5597
1709     RG-H8 0.1640
1710     RC-O5' -0.4989
1711     RC-C5' 0.0558
1712     RC-H5'1 0.0679
1713     RC-H5'2 0.0679
1714     RC-C4' 0.1065
1715     RC-H4' 0.1174
1716     RC-O4' -0.3548
1717     RC-C1' 0.0066
1718     RC-H1' 0.2029
1719     RC-C3' 0.2022
1720     RC-H3' 0.0615
1721     RC-C2' 0.0670
1722     RC-H2'1 0.0972
1723     RC-O2' -0.6139
1724     RC-HO'2 0.4186
1725     RC-O3' -0.5246
1726     RC-N1 -0.0484
1727     RC-C2 0.7538
1728     RC-N3 -0.7584
1729     RC-C4 0.8185
1730     RC-C5 -0.5215
1731     RC-C6 0.0053
1732     RC-O2 -0.6252
1733     RC-N4 -0.9530
1734     RC-H41 0.4234
1735     RC-H42 0.4234
1736     RC-H5 0.1928
1737     RC-H6 0.1958
1738     RU-O5' -0.4989
1739     RU-C5' 0.0558
1740     RU-H5'1 0.0679
1741     RU-H5'2 0.0679
1742     RU-C4' 0.1065
1743     RU-H4' 0.1174
1744     RU-O4' -0.3548
1745     RU-C1' 0.0674
1746     RU-H1' 0.1824
1747     RU-C3' 0.2022
1748     RU-H3' 0.0615
1749     RU-C2' 0.0670
1750     RU-H2'1 0.0972
1751     RU-O2' -0.6139
1752     RU-HO'2 0.4186
1753     RU-O3' -0.5246
1754     RU-N1 0.0418
1755     RU-C2 0.4687
1756     RU-N3 -0.3549
1757     RU-C4 0.5952
1758     RU-C5 -0.3635
1759     RU-C6 -0.1126
1760     RU-O2 -0.5477
1761     RU-H3 0.3154
1762     RU-O4 -0.5761
1763     RU-H5 0.1811
1764     RU-H6 0.2188
1765     DA-O5' -0.4954
1766     DA-C5' -0.0069
1767     DA-H5'1 0.0754
1768     DA-H5'2 0.0754
1769     DA-C4' 0.1629
1770     DA-H4' 0.1176
1771     DA-O4' -0.3691
1772     DA-C1' 0.0431
1773     DA-H1' 0.1838
1774     DA-C3' 0.0713
1775     DA-H3' 0.0985
1776     DA-C2' -0.0854
1777     DA-H2'1 0.0718
1778     DA-H2'2 0.0718
1779     DA-O3' -0.5232
1780     DA-N9 -0.0268
1781     DA-C4 0.3800
1782     DA-C5 0.0725
1783     DA-N7 -0.6175
1784     DA-C8 0.1607
1785     DA-N3 -0.7417
1786     DA-C2 0.5716
1787     DA-N1 -0.7624
1788     DA-C6 0.6897
1789     DA-H2 0.0598
1790     DA-N6 -0.9123
1791     DA-H61 0.4167
1792     DA-H62 0.4167
1793     DA-H8 0.1877
1794     DG-O5' -0.4954
1795     DG-C5' -0.0069
1796     DG-H5'1 0.0754
1797     DG-H5'2 0.0754
1798     DG-C4' 0.1629
1799     DG-H4' 0.1176
1800     DG-O4' -0.3691
1801     DG-C1' 0.0358
1802     DG-H1' 0.1746
1803     DG-C3' 0.0713
1804     DG-H3' 0.0985
1805     DG-C2' -0.0854
1806     DG-H2'1 0.0718
1807     DG-H2'2 0.0718
1808     DG-O3' -0.5232
1809     DG-N9 0.0577
1810     DG-C4 0.1814
1811     DG-C5 0.1991
1812     DG-N7 -0.5725
1813     DG-C8 0.0736
1814     DG-N3 -0.6636
1815     DG-C2 0.7432
1816     DG-N1 -0.5053
1817     DG-C6 0.4918
1818     DG-H1 0.3520
1819     DG-N2 -0.9230
1820     DG-H21 0.4235
1821     DG-H22 0.4235
1822     DG-O6 -0.5699
1823     DG-H8 0.1997
1824     DC-O5' -0.4954
1825     DC-C5' -0.0069
1826     DC-H5'1 0.0754
1827     DC-H5'2 0.0754
1828     DC-C4' 0.1629
1829     DC-H4' 0.1176
1830     DC-O4' -0.3691
1831     DC-C1' -0.0116
1832     DC-H1' 0.1963
1833     DC-C3' 0.0713
1834     DC-H3' 0.0985
1835     DC-C2' -0.0854
1836     DC-H2'1 0.0718
1837     DC-H2'2 0.0718
1838     DC-O3' -0.5232
1839     DC-N1 -0.0339
1840     DC-C2 0.7959
1841     DC-N3 -0.7748
1842     DC-C4 0.8439
1843     DC-C5 -0.5222
1844     DC-C6 -0.0183
1845     DC-O2 -0.6548
1846     DC-N4 -0.9773
1847     DC-H41 0.4314
1848     DC-H42 0.4314
1849     DC-H5 0.1863
1850     DC-H6 0.2293
1851     DT-O5' -0.4954
1852     DT-C5' -0.0069
1853     DT-H5'1 0.0754
1854     DT-H5'2 0.0754
1855     DT-C4' 0.1629
1856     DT-H4' 0.1176
1857     DT-O4' -0.3691
1858     DT-C1' 0.0680
1859     DT-H1' 0.1804
1860     DT-C3' 0.0713
1861     DT-H3' 0.0985
1862     DT-C2' -0.0854
1863     DT-H2'1 0.0718
1864     DT-H2'2 0.0718
1865     DT-O3' -0.5232
1866     DT-N1 -0.0239
1867     DT-C2 0.5677
1868     DT-N3 -0.4340
1869     DT-C4 0.5194
1870     DT-C5 0.0025
1871     DT-C6 -0.2209
1872     DT-O2 -0.5881
1873     DT-H3 0.3420
1874     DT-O4 -0.5563
1875     DT-C7 -0.2269
1876     DT-H7 0.0770
1877     DT-H6 0.2607
1878 gezelter 1278 R-Phosphodiester-P 1.1662
1879     R-Phosphodiester-O -0.7760
1880 gezelter 1270 R5H-O5' -0.6223
1881     R5H-H5T 0.4295
1882     R5P-O5' -0.6328
1883     R5P-P 0.9000
1884     R5P-OP -0.8200
1885     R3H-O3' -0.6541
1886     R3H-H3T 0.4376
1887     R3P-O3' -0.6565
1888     R3P-P 0.9000
1889     R3P-OP -0.8200
1890 gezelter 1278 D-Phosphodiester-P 1.1659
1891     D-Phosphodiester-O -0.7761
1892 gezelter 1270 D5H-O5' -0.6318
1893     D5H-H5T 0.4422
1894     D5P-O5' -0.6296
1895     D5P-P 0.9000
1896     D5P-OP -0.8200
1897     D3H-O3' -0.6549
1898     D3H-H3T 0.4396
1899     D3P-O3' -0.6553
1900     D3P-P 0.9000
1901     D3P-OP -0.8200
1902 gezelter 1278 TIP3P-O -0.834
1903 kstocke1 1701 TIP3P-H 0.417
1904     O_TIP3P -0.834
1905     O_SPCE -0.8476
1906     O_SPC -0.82
1907     O_POL3 -0.7300
1908     H_TIP3P 0.417
1909     H_TIP4P 0.520
1910     H_TIP4P-Ew 0.52422
1911     H_TIP5P 0.241
1912     H_SPCE 0.4238
1913     H_SPC 0.42
1914     H_POL3 0.3650
1915     EP_TIP4P -1.040
1916     EP_TIP4P-Ew -1.04844
1917     EP_TIP5P -0.241
1918 gezelter 1270 Li+ 1.000
1919     Na+ 1.000
1920     K+ 1.000
1921     Rb+ 1.000
1922     Cs+ 1.000
1923     Mg+2 2.000
1924     Ca+2 2.000
1925     Zn+2 2.000
1926     Cl- -1.000
1927     end ChargeAtomTypes
1928    
1929    
1930    
1931     begin LennardJonesAtomTypes
1932     //name epsilon sigma
1933     CT 0.109400 3.399670
1934     C 0.086000 3.399670
1935     CA 0.086000 3.399670
1936     CM 0.086000 3.399670
1937     CC 0.086000 3.399670
1938     CV 0.086000 3.399670
1939     CW 0.086000 3.399670
1940     CR 0.086000 3.399670
1941     CB 0.086000 3.399670
1942     C* 0.086000 3.399670
1943     CN 0.086000 3.399670
1944     CK 0.086000 3.399670
1945     CQ 0.086000 3.399670
1946     N 0.170000 3.249999
1947     NA 0.170000 3.249999
1948     NB 0.170000 3.249999
1949     NC 0.170000 3.249999
1950     N* 0.170000 3.249999
1951     N2 0.170000 3.249999
1952     N3 0.170000 3.340870
1953     OW 0.152000 3.150752
1954 gezelter 1363 O_TIP3P 0.1521 3.15061
1955     O_TIP4P 0.1550 3.15365
1956     O_TIP4P-Ew 0.16275 3.16435
1957     O_TIP5P 0.16 3.12
1958     O_TIP5P-E 0.178 3.097
1959     O_SPCE 0.15532 3.16549
1960     O_SPC 0.15532 3.16549
1961 kstocke1 1701 O_POL3 0.156 1.7980
1962 gezelter 1270 OH 0.210400 3.066473
1963     OS 0.170000 3.000012
1964     O 0.210000 2.959922
1965     O2 0.210000 2.959922
1966     S 0.250000 3.563595
1967     SH 0.250000 3.563595
1968     P 0.200000 3.741775
1969     H 0.015700 1.069078
1970     HW 0.000000 0.000178
1971     HO 0.000000 0.000178
1972     HS 0.015700 1.069078
1973     HA 0.015000 2.599642
1974     HC 0.015700 2.649533
1975     H1 0.015700 2.471353
1976     H2 0.015700 2.293173
1977     H3 0.015700 2.114994
1978     HP 0.015700 1.959977
1979     H4 0.015000 2.510553
1980     H5 0.015000 2.421463
1981     Li+ 0.018300 2.025904
1982     Na+ 0.002770 3.328398
1983     K+ 0.000328 4.736018
1984     Rb+ 0.000170 5.266993
1985     Cs+ 0.000081 6.049202
1986 gezelter 1278 Mg+2 0.894700 1.412253
1987     Ca+2 0.459789 3.052397
1988     Zn+2 0.012500 1.959977
1989 gezelter 1270 Cl- 0.100000 4.401040
1990     end LennardJonesAtomTypes
1991    
1992    
1993     begin BondTypes
1994     //Atom1 Atom2 Harmonic b0 kb (kcal/mol)
1995     CT CT Harmonic 1.526000 310.000000
1996     CT C Harmonic 1.522000 317.000000
1997     CT CA Harmonic 1.510000 317.000000
1998     CT CM Harmonic 1.510000 317.000000
1999     CT CC Harmonic 1.504000 317.000000
2000     CT C* Harmonic 1.495000 317.000000
2001     CT N Harmonic 1.449000 337.000000
2002     CT N* Harmonic 1.475000 337.000000
2003     CT N2 Harmonic 1.463000 337.000000
2004     CT N3 Harmonic 1.471000 367.000000
2005     CT OH Harmonic 1.410000 320.000000
2006     CT OS Harmonic 1.410000 320.000000
2007     CT S Harmonic 1.810000 227.000000
2008     CT SH Harmonic 1.810000 237.000000
2009     CT HC Harmonic 1.090000 340.000000
2010     CT H1 Harmonic 1.090000 340.000000
2011     CT H2 Harmonic 1.090000 340.000000
2012     CT H3 Harmonic 1.090000 340.000000
2013     CT HP Harmonic 1.090000 340.000000
2014     C CA Harmonic 1.409000 469.000000
2015     C CM Harmonic 1.444000 410.000000
2016     C CB Harmonic 1.419000 447.000000
2017     C N Harmonic 1.335000 490.000000
2018     C NA Harmonic 1.388000 418.000000
2019     C NC Harmonic 1.358000 457.000000
2020     C N* Harmonic 1.383000 424.000000
2021     C O Harmonic 1.229000 570.000000
2022     C O2 Harmonic 1.250000 656.000000
2023     CA CA Harmonic 1.400000 469.000000
2024     CA CM Harmonic 1.433000 427.000000
2025     CA CB Harmonic 1.404000 469.000000
2026     CA CN Harmonic 1.400000 469.000000
2027     CA NA Harmonic 1.381000 427.000000
2028     CA NC Harmonic 1.339000 483.000000
2029     CA N2 Harmonic 1.340000 481.000000
2030     CA OH Harmonic 1.364000 450.000000
2031     CA HA Harmonic 1.080000 367.000000
2032     CA H4 Harmonic 1.080000 367.000000
2033     CM CM Harmonic 1.350000 549.000000
2034     CM N* Harmonic 1.365000 448.000000
2035     CM HA Harmonic 1.080000 367.000000
2036     CM H4 Harmonic 1.080000 367.000000
2037     CM H5 Harmonic 1.080000 367.000000
2038     CC CV Harmonic 1.375000 512.000000
2039     CC CW Harmonic 1.371000 518.000000
2040     CC NA Harmonic 1.385000 422.000000
2041     CC NB Harmonic 1.394000 410.000000
2042     CV NB Harmonic 1.394000 410.000000
2043     CV H4 Harmonic 1.080000 367.000000
2044     CW C* Harmonic 1.352000 546.000000
2045     CW NA Harmonic 1.381000 427.000000
2046     CW H4 Harmonic 1.080000 367.000000
2047     CR NA Harmonic 1.343000 477.000000
2048     CR NB Harmonic 1.335000 488.000000
2049     CR H5 Harmonic 1.080000 367.000000
2050     CB CB Harmonic 1.370000 520.000000
2051     CB C* Harmonic 1.459000 388.000000
2052     CB CN Harmonic 1.419000 447.000000
2053     CB NB Harmonic 1.391000 414.000000
2054     CB NC Harmonic 1.354000 461.000000
2055     CB N* Harmonic 1.374000 436.000000
2056     C* HC Harmonic 1.080000 367.000000
2057     CN NA Harmonic 1.380000 428.000000
2058     CK NB Harmonic 1.304000 529.000000
2059     CK N* Harmonic 1.371000 440.000000
2060     CK H5 Harmonic 1.080000 367.000000
2061     CQ NC Harmonic 1.324000 502.000000
2062     CQ H5 Harmonic 1.080000 367.000000
2063     N H Harmonic 1.010000 434.000000
2064     NA H Harmonic 1.010000 434.000000
2065     N* H Harmonic 1.010000 434.000000
2066     N2 H Harmonic 1.010000 434.000000
2067     N3 H Harmonic 1.010000 434.000000
2068     OW HW Harmonic 0.957200 553.000000
2069     OH P Harmonic 1.610000 230.000000
2070     OH HO Harmonic 0.960000 553.000000
2071     OS P Harmonic 1.610000 230.000000
2072     OS HO Harmonic 0.960000 553.000000
2073     O2 P Harmonic 1.480000 525.000000
2074     S S Harmonic 2.038000 166.000000
2075     SH HS Harmonic 1.336000 274.000000
2076     HW HW Harmonic 1.513600 553.000000
2077 gezelter 1278 end BondTypes
2078 gezelter 1270
2079    
2080     begin BendTypes
2081     //Atom1 Atom2 Atom3 Harmonic Theta Ktheta
2082     CT CT CT Harmonic 109.500000 80.000000
2083     CT CT C Harmonic 111.100000 126.000000
2084     CT CT CA Harmonic 114.000000 126.000000
2085     CT CT CC Harmonic 113.100000 126.000000
2086     CT CT C* Harmonic 115.600000 126.000000
2087     CT CT N Harmonic 109.700000 160.000000
2088     CT CT N* Harmonic 109.500000 100.000000
2089     CT CT N2 Harmonic 111.200000 160.000000
2090     CT CT N3 Harmonic 111.200000 160.000000
2091     CT CT OH Harmonic 109.500000 100.000000
2092     CT CT OS Harmonic 109.500000 100.000000
2093     CT CT S Harmonic 114.700000 100.000000
2094     CT CT SH Harmonic 108.600000 100.000000
2095     CT CT HC Harmonic 109.500000 100.000000
2096     CT CT H1 Harmonic 109.500000 100.000000
2097     CT CT H2 Harmonic 109.500000 100.000000
2098     CT CT HP Harmonic 109.500000 100.000000
2099     C CT N Harmonic 110.100000 126.000000
2100     C CT N3 Harmonic 111.200000 160.000000
2101     C CT HC Harmonic 109.500000 100.000000
2102     C CT H1 Harmonic 109.500000 100.000000
2103     C CT HP Harmonic 109.500000 100.000000
2104     CA CT HC Harmonic 109.500000 100.000000
2105     CM CT HC Harmonic 109.500000 100.000000
2106     CC CT HC Harmonic 109.500000 100.000000
2107     C* CT HC Harmonic 109.500000 100.000000
2108     N CT H1 Harmonic 109.500000 100.000000
2109     N* CT OS Harmonic 109.500000 100.000000
2110     N* CT H1 Harmonic 109.500000 100.000000
2111     N* CT H2 Harmonic 109.500000 100.000000
2112     N2 CT H1 Harmonic 109.500000 100.000000
2113     N3 CT H1 Harmonic 109.500000 100.000000
2114     N3 CT HP Harmonic 109.500000 100.000000
2115     OH CT H1 Harmonic 109.500000 100.000000
2116     OS CT H1 Harmonic 109.500000 100.000000
2117     OS CT H2 Harmonic 109.500000 100.000000
2118     S CT H1 Harmonic 109.500000 100.000000
2119     SH CT H1 Harmonic 109.500000 100.000000
2120     HC CT HC Harmonic 109.500000 70.000000
2121     H1 CT H1 Harmonic 109.500000 70.000000
2122     H2 CT H2 Harmonic 109.500000 70.000000
2123     HP CT HP Harmonic 109.500000 70.000000
2124     CT C N Harmonic 116.600000 140.000000
2125     CT C O Harmonic 120.400000 160.000000
2126     CT C O2 Harmonic 117.000000 140.000000
2127     CA C CA Harmonic 120.000000 126.000000
2128     CM C NA Harmonic 114.100000 140.000000
2129     CM C O Harmonic 125.300000 160.000000
2130     CB C NA Harmonic 111.300000 140.000000
2131     CB C O Harmonic 128.800000 160.000000
2132     N C O Harmonic 122.900000 160.000000
2133     NA C N* Harmonic 115.400000 140.000000
2134     NA C O Harmonic 120.600000 160.000000
2135     NC C N* Harmonic 118.600000 140.000000
2136     NC C O Harmonic 122.500000 160.000000
2137     N* C O Harmonic 120.900000 160.000000
2138     O C O Harmonic 126.000000 160.000000
2139     O2 C O2 Harmonic 126.000000 160.000000
2140     CT CA CA Harmonic 120.000000 140.000000
2141     C CA CA Harmonic 120.000000 126.000000
2142     C CA HA Harmonic 120.000000 100.000000
2143     CA CA CA Harmonic 120.000000 126.000000
2144     CA CA CB Harmonic 120.000000 126.000000
2145     CA CA CN Harmonic 120.000000 126.000000
2146     CA CA OH Harmonic 120.000000 140.000000
2147     CA CA HA Harmonic 120.000000 100.000000
2148     CA CA H4 Harmonic 120.000000 100.000000
2149     CM CA NC Harmonic 121.500000 140.000000
2150     CM CA N2 Harmonic 120.100000 140.000000
2151     CB CA NC Harmonic 117.300000 140.000000
2152     CB CA N2 Harmonic 123.500000 140.000000
2153     CB CA HA Harmonic 120.000000 100.000000
2154     CB CA H4 Harmonic 120.000000 100.000000
2155     CN CA HA Harmonic 120.000000 100.000000
2156     NA CA NC Harmonic 123.300000 140.000000
2157     NA CA N2 Harmonic 116.000000 140.000000
2158     NC CA N2 Harmonic 119.300000 140.000000
2159     N2 CA N2 Harmonic 120.000000 140.000000
2160     CT CM C Harmonic 119.700000 140.000000
2161     CT CM CM Harmonic 119.700000 140.000000
2162     C CM CM Harmonic 120.700000 126.000000
2163     C CM HA Harmonic 119.700000 100.000000
2164     C CM H4 Harmonic 119.700000 100.000000
2165     CA CM CM Harmonic 117.000000 126.000000
2166     CA CM HA Harmonic 123.300000 100.000000
2167     CA CM H4 Harmonic 123.300000 100.000000
2168     CM CM N* Harmonic 121.200000 140.000000
2169     CM CM HA Harmonic 119.700000 100.000000
2170     CM CM H4 Harmonic 119.700000 100.000000
2171     N* CM H4 Harmonic 119.100000 100.000000
2172     CT CC CV Harmonic 120.000000 140.000000
2173     CT CC CW Harmonic 120.000000 140.000000
2174     CT CC NA Harmonic 120.000000 140.000000
2175     CT CC NB Harmonic 120.000000 140.000000
2176     CV CC NA Harmonic 120.000000 140.000000
2177     CW CC NA Harmonic 120.000000 140.000000
2178     CW CC NB Harmonic 120.000000 140.000000
2179     CC CV NB Harmonic 120.000000 140.000000
2180     CC CV H4 Harmonic 120.000000 100.000000
2181     NB CV H4 Harmonic 120.000000 100.000000
2182     CC CW NA Harmonic 120.000000 140.000000
2183     CC CW H4 Harmonic 120.000000 100.000000
2184     C* CW NA Harmonic 108.700000 140.000000
2185     C* CW H4 Harmonic 120.000000 100.000000
2186     NA CW H4 Harmonic 120.000000 100.000000
2187     NA CR NA Harmonic 120.000000 140.000000
2188     NA CR NB Harmonic 120.000000 140.000000
2189     NA CR H5 Harmonic 120.000000 100.000000
2190     NB CR H5 Harmonic 120.000000 100.000000
2191     C CB CB Harmonic 119.200000 126.000000
2192     C CB NB Harmonic 130.000000 140.000000
2193     CA CB CB Harmonic 117.300000 126.000000
2194     CA CB C* Harmonic 134.900000 126.000000
2195     CA CB CN Harmonic 116.200000 126.000000
2196     CA CB NB Harmonic 132.400000 140.000000
2197     CB CB NB Harmonic 110.400000 140.000000
2198     CB CB NC Harmonic 127.700000 140.000000
2199     CB CB N* Harmonic 106.200000 140.000000
2200     C* CB CN Harmonic 108.800000 126.000000
2201     NC CB N* Harmonic 126.200000 140.000000
2202     CT C* CW Harmonic 125.000000 140.000000
2203     CT C* CB Harmonic 128.600000 140.000000
2204     CW C* CB Harmonic 106.400000 126.000000
2205     CA CN CB Harmonic 122.700000 126.000000
2206     CA CN NA Harmonic 132.800000 140.000000
2207     CB CN NA Harmonic 104.400000 140.000000
2208     NB CK N* Harmonic 113.900000 140.000000
2209     NB CK H5 Harmonic 123.050000 100.000000
2210     N* CK H5 Harmonic 123.050000 100.000000
2211     NC CQ NC Harmonic 129.100000 140.000000
2212     NC CQ H5 Harmonic 115.450000 100.000000
2213     CT N CT Harmonic 118.000000 100.000000
2214     CT N C Harmonic 121.900000 100.000000
2215     CT N H Harmonic 118.040000 100.000000
2216     C N H Harmonic 120.000000 100.000000
2217     H N H Harmonic 120.000000 70.000000
2218     C NA C Harmonic 126.400000 140.000000
2219     C NA CA Harmonic 125.200000 140.000000
2220     C NA H Harmonic 116.800000 100.000000
2221     CA NA H Harmonic 118.000000 100.000000
2222     CC NA CR Harmonic 120.000000 140.000000
2223     CC NA H Harmonic 120.000000 100.000000
2224     CW NA CR Harmonic 120.000000 140.000000
2225     CW NA CN Harmonic 111.600000 140.000000
2226     CW NA H Harmonic 120.000000 100.000000
2227     CR NA H Harmonic 120.000000 100.000000
2228     CN NA H Harmonic 123.100000 100.000000
2229     CC NB CR Harmonic 117.000000 140.000000
2230     CV NB CR Harmonic 117.000000 140.000000
2231     CB NB CK Harmonic 103.800000 140.000000
2232     C NC CA Harmonic 120.500000 140.000000
2233     CA NC CB Harmonic 112.200000 140.000000
2234     CA NC CQ Harmonic 118.600000 140.000000
2235     CB NC CQ Harmonic 111.000000 140.000000
2236     CT N* C Harmonic 117.600000 140.000000
2237     CT N* CM Harmonic 121.200000 140.000000
2238     CT N* CB Harmonic 125.800000 140.000000
2239     CT N* CK Harmonic 128.800000 140.000000
2240     C N* CM Harmonic 121.600000 140.000000
2241     C N* H Harmonic 119.200000 100.000000
2242     CM N* H Harmonic 121.200000 100.000000
2243     CB N* CK Harmonic 105.400000 140.000000
2244     CB N* H Harmonic 125.800000 100.000000
2245     CK N* H Harmonic 128.800000 100.000000
2246     CT N2 CA Harmonic 123.200000 100.000000
2247     CT N2 H Harmonic 118.400000 100.000000
2248     CA N2 H Harmonic 120.000000 100.000000
2249     H N2 H Harmonic 120.000000 70.000000
2250     CT N3 CT Harmonic 109.500000 100.000000
2251     CT N3 H Harmonic 109.500000 100.000000
2252     H N3 H Harmonic 109.500000 70.000000
2253     HW OW HW Harmonic 104.520000 200.000000
2254     CT OH HO Harmonic 108.500000 110.000000
2255     CA OH HO Harmonic 113.000000 100.000000
2256     P OH HO Harmonic 108.500000 90.000000
2257     CT OS CT Harmonic 109.500000 120.000000
2258     CT OS P Harmonic 120.500000 200.000000
2259     P OS P Harmonic 120.500000 200.000000
2260     CT S CT Harmonic 98.900000 124.000000
2261     CT S S Harmonic 103.700000 136.000000
2262     CT SH HS Harmonic 96.000000 86.000000
2263     HS SH HS Harmonic 92.070000 70.000000
2264     OH P OS Harmonic 102.600000 90.000000
2265     OH P O2 Harmonic 108.230000 90.000000
2266     OS P OS Harmonic 102.600000 90.000000
2267     OS P O2 Harmonic 108.230000 200.000000
2268     O2 P O2 Harmonic 119.900000 280.000000
2269     OW HW HW Harmonic 127.740000 0.000000
2270 gezelter 1414 C OH HO Harmonic 113.00 50.00000
2271 gezelter 1270 end BendTypes
2272    
2273    
2274     begin TorsionTypes
2275     //Atom1 Atom2 Atom3 Atom4 Charmm Kchi n delta [Kchi n delta]
2276     CT CT CT CT Charmm 0.200000 1 180.000000 0.25 2 180 0.18 3 0
2277     CT CT CT C Charmm 0.156000 3 0.000000
2278     CT CT CT N Charmm 0.156000 3 0.000000
2279     CT CT CT N* Charmm 0.156000 3 0.000000
2280     CT CT CT N2 Charmm 0.156000 3 0.000000
2281     CT CT CT N3 Charmm 0.156000 3 0.000000
2282     CT CT CT OH Charmm 0.156000 3 0.000000
2283     CT CT CT OS Charmm 0.156000 3 0.000000
2284     CT CT CT S Charmm 0.156000 3 0.000000
2285     CT CT CT HC Charmm 0.160000 3 0.000000
2286     CT CT CT H1 Charmm 0.156000 3 0.000000
2287     CT CT CT H2 Charmm 0.156000 3 0.000000
2288     CT CT CT HP Charmm 0.156000 3 0.000000
2289     C CT CT C Charmm 0.156000 3 0.000000
2290     C CT CT CA Charmm 0.156000 3 0.000000
2291     C CT CT CC Charmm 0.156000 3 0.000000
2292     C CT CT C* Charmm 0.156000 3 0.000000
2293     C CT CT N Charmm 0.156000 3 0.000000
2294     C CT CT N3 Charmm 0.156000 3 0.000000
2295     C CT CT OH Charmm 0.156000 3 0.000000
2296     C CT CT S Charmm 0.156000 3 0.000000
2297     C CT CT SH Charmm 0.156000 3 0.000000
2298     C CT CT HC Charmm 0.156000 3 0.000000
2299     C CT CT H1 Charmm 0.156000 3 0.000000
2300     C CT CT HP Charmm 0.156000 3 0.000000
2301     CA CT CT N Charmm 0.156000 3 0.000000
2302     CA CT CT N3 Charmm 0.156000 3 0.000000
2303     CA CT CT H1 Charmm 0.156000 3 0.000000
2304     CA CT CT HP Charmm 0.156000 3 0.000000
2305     CC CT CT N Charmm 0.156000 3 0.000000
2306     CC CT CT N3 Charmm 0.156000 3 0.000000
2307     CC CT CT H1 Charmm 0.156000 3 0.000000
2308     CC CT CT HP Charmm 0.156000 3 0.000000
2309     C* CT CT N Charmm 0.156000 3 0.000000
2310     C* CT CT N3 Charmm 0.156000 3 0.000000
2311     C* CT CT H1 Charmm 0.156000 3 0.000000
2312     C* CT CT HP Charmm 0.156000 3 0.000000
2313     N CT CT OH Charmm 0.156000 3 0.000000
2314     N CT CT S Charmm 0.156000 3 0.000000
2315     N CT CT SH Charmm 0.156000 3 0.000000
2316     N CT CT HC Charmm 0.156000 3 0.000000
2317     N CT CT H1 Charmm 0.156000 3 0.000000
2318     N* CT CT OH Charmm 0.156000 3 0.000000
2319     N* CT CT HC Charmm 0.156000 3 0.000000
2320     N* CT CT H1 Charmm 0.156000 3 0.000000
2321     N2 CT CT HC Charmm 0.156000 3 0.000000
2322     N3 CT CT OH Charmm 0.156000 3 0.000000
2323     N3 CT CT S Charmm 0.156000 3 0.000000
2324     N3 CT CT SH Charmm 0.156000 3 0.000000
2325     N3 CT CT HC Charmm 0.156000 3 0.000000
2326     N3 CT CT H1 Charmm 0.156000 3 0.000000
2327     OH CT CT N* Charmm 0.156000 3 0.000000
2328     OH CT CT OH Charmm 0.144000 3 0.000000 1.175 2 0
2329     OH CT CT OS Charmm 0.144000 3 0.000000 1.175 2 0
2330     OH CT CT HC Charmm 0.156000 3 0.000000 0.25 1 0
2331     OH CT CT H1 Charmm 0.156000 3 0.000000
2332     OH CT CT H2 Charmm 0.156000 3 0.000000
2333     OH CT CT HP Charmm 0.156000 3 0.000000
2334     OS CT CT OS Charmm 0.144000 3 0.000000 1.175 2 0
2335     OS CT CT HC Charmm 0.156000 3 0.000000 0.25 1 0
2336     OS CT CT H1 Charmm 0.156000 3 0.000000
2337     S CT CT HC Charmm 0.156000 3 0.000000
2338     S CT CT H1 Charmm 0.156000 3 0.000000
2339     S CT CT HP Charmm 0.156000 3 0.000000
2340     SH CT CT H1 Charmm 0.156000 3 0.000000
2341     SH CT CT HP Charmm 0.156000 3 0.000000
2342     HC CT CT HC Charmm 0.150000 3 0.000000
2343     HC CT CT H1 Charmm 0.156000 3 0.000000
2344     HC CT CT H2 Charmm 0.156000 3 0.000000
2345     HC CT CT HP Charmm 0.156000 3 0.000000
2346     H1 CT CT H1 Charmm 0.156000 3 0.000000
2347     H1 CT CT H2 Charmm 0.156000 3 0.000000
2348     H1 CT CT HP Charmm 0.156000 3 0.000000
2349     CT CT C N Charmm 0.070000 2 0.000000 0.1 4 0
2350     CT CT C O Charmm 0.000000 2 0.000000
2351     CT CT C O2 Charmm 0.000000 2 0.000000
2352     N CT C N Charmm 1.700000 1 180.000000 2.0 2 180
2353     N CT C O Charmm 0.000000 2 0.000000
2354     N CT C O2 Charmm 0.000000 2 0.000000
2355     N3 CT C N Charmm 0.000000 2 0.000000
2356     N3 CT C O Charmm 0.000000 2 0.000000
2357     N3 CT C O2 Charmm 0.000000 2 0.000000
2358     HC CT C N Charmm 0.000000 2 0.000000
2359     HC CT C O Charmm 0.800000 1 0.000000 0.08 3 180
2360     HC CT C O2 Charmm 0.000000 2 0.000000
2361     H1 CT C N Charmm 0.000000 2 0.000000
2362     H1 CT C O Charmm 0.800000 1 0.000000 0.08 3 180
2363     H1 CT C O2 Charmm 0.000000 2 0.000000
2364     CT CT CA CA Charmm 0.000000 2 0.000000
2365     HC CT CA CA Charmm 0.000000 2 0.000000
2366     HC CT CM C Charmm 0.000000 3 0.000000
2367     HC CT CM CM Charmm 1.150000 1 0.000000 0.38 3 180
2368     CT CT CC CV Charmm 0.000000 2 0.000000
2369     CT CT CC CW Charmm 0.000000 2 0.000000
2370     CT CT CC NA Charmm 0.000000 2 0.000000
2371     CT CT CC NB Charmm 0.000000 2 0.000000
2372     HC CT CC CV Charmm 0.000000 2 0.000000
2373     HC CT CC CW Charmm 0.000000 2 0.000000
2374     HC CT CC NA Charmm 0.000000 2 0.000000
2375     HC CT CC NB Charmm 0.000000 2 0.000000
2376     CT CT C* CW Charmm 0.000000 2 0.000000
2377     CT CT C* CB Charmm 0.000000 2 0.000000
2378     HC CT C* CW Charmm 0.000000 2 0.000000
2379     HC CT C* CB Charmm 0.000000 2 0.000000
2380     CT CT N CT Charmm 0.000000 2 0.000000
2381     CT CT N C Charmm 0.530000 1 0.000000 0.15 3 180 0.5 4 180
2382     CT CT N H Charmm 0.000000 2 0.000000
2383     C CT N CT Charmm 0.000000 2 0.000000
2384     C CT N C Charmm 0.800000 1 0.000000 0.85 2 180
2385     C CT N H Charmm 0.000000 2 0.000000
2386     H1 CT N CT Charmm 0.000000 2 0.000000
2387     H1 CT N C Charmm 0.000000 2 0.000000
2388     H1 CT N H Charmm 0.000000 2 0.000000
2389     CT CT N* C Charmm 0.000000 2 0.000000
2390     CT CT N* CM Charmm 0.000000 2 0.000000
2391     CT CT N* CB Charmm 0.000000 2 0.000000
2392     CT CT N* CK Charmm 0.000000 2 0.000000
2393     OS CT N* C Charmm 0.000000 2 0.000000
2394     OS CT N* CM Charmm 0.000000 2 180.000000 2.5 1 0
2395     OS CT N* CB Charmm 0.000000 2 0.000000
2396     OS CT N* CK Charmm 0.000000 2 180.000000 2.5 1 0
2397     H2 CT N* C Charmm 0.000000 2 0.000000
2398     H2 CT N* CM Charmm 0.000000 2 0.000000
2399     H2 CT N* CB Charmm 0.000000 2 0.000000
2400     H2 CT N* CK Charmm 0.000000 2 0.000000
2401     CT CT N2 CA Charmm 0.000000 3 0.000000
2402     CT CT N2 H Charmm 0.000000 3 0.000000
2403     H1 CT N2 CA Charmm 0.000000 3 0.000000
2404     H1 CT N2 H Charmm 0.000000 3 0.000000
2405     CT CT N3 CT Charmm 0.156000 3 0.000000
2406     CT CT N3 H Charmm 0.156000 3 0.000000
2407     C CT N3 CT Charmm 0.156000 3 0.000000
2408     C CT N3 H Charmm 0.156000 3 0.000000
2409     H1 CT N3 CT Charmm 0.156000 3 0.000000
2410     H1 CT N3 H Charmm 0.156000 3 0.000000
2411     HP CT N3 CT Charmm 0.156000 3 0.000000
2412     HP CT N3 H Charmm 0.156000 3 0.000000
2413     CT CT OH HO Charmm 0.025000 1 0.000000 0.16 3 0
2414     H1 CT OH HO Charmm 0.167000 3 0.000000
2415     CT CT OS CT Charmm 0.383000 3 0.000000 0.1 2 180
2416     CT CT OS C Charmm 0.383000 3 0.000000 0.8 1 180
2417     CT CT OS P Charmm 0.383000 3 0.000000
2418     N* CT OS CT Charmm 0.383000 3 0.000000 0.65 2 0
2419     OS CT OS CT Charmm 1.350000 1 180.000000 0.85 3 180 0.1 3 0
2420     OS CT OS CT Charmm 0.850000 2 180.000000 0.1 3 0
2421     OS CT OS CT Charmm 0.850000 2 180.000000 0.1 3 0
2422     H1 CT OS CT Charmm 0.383000 3 0.000000
2423     H1 CT OS P Charmm 0.383000 3 0.000000
2424     H2 CT OS CT Charmm 0.383000 3 0.000000
2425     CT CT S CT Charmm 0.333000 3 0.000000
2426     CT CT S S Charmm 0.333000 3 0.000000
2427     H1 CT S CT Charmm 0.333000 3 0.000000
2428     H1 CT S S Charmm 0.333000 3 0.000000
2429     CT CT SH HS Charmm 0.250000 3 0.000000
2430     H1 CT SH HS Charmm 0.250000 3 0.000000
2431     NA C CM CT Charmm 2.175000 2 180.000000
2432     NA C CM CM Charmm 2.175000 2 180.000000
2433     NA C CM HA Charmm 2.175000 2 180.000000
2434     O C CM CT Charmm 2.175000 2 180.000000
2435     O C CM CM Charmm 2.175000 2 180.000000 0.3 3 0
2436     O C CM HA Charmm 2.175000 2 180.000000
2437     NA C CB CB Charmm 3.000000 2 180.000000
2438     NA C CB NB Charmm 3.000000 2 180.000000
2439     O C CB CB Charmm 3.000000 2 180.000000
2440     O C CB NB Charmm 3.000000 2 180.000000
2441     CT C N CT Charmm 2.500000 2 180.000000
2442     CT C N H Charmm 2.500000 2 180.000000
2443     O C N CT Charmm 2.500000 2 180.000000
2444     O C N H Charmm 2.000000 1 0.000000 2.5 2 180
2445     CM C NA C Charmm 1.350000 2 180.000000
2446     CM C NA H Charmm 1.350000 2 180.000000
2447     CB C NA CA Charmm 1.350000 2 180.000000
2448     CB C NA H Charmm 1.350000 2 180.000000
2449     N* C NA C Charmm 1.350000 2 180.000000
2450     N* C NA H Charmm 1.350000 2 180.000000
2451     O C NA C Charmm 1.350000 2 180.000000
2452     O C NA CA Charmm 1.350000 2 180.000000
2453     O C NA H Charmm 1.350000 2 180.000000
2454     N* C NC CA Charmm 4.000000 2 180.000000
2455     O C NC CA Charmm 4.000000 2 180.000000
2456     NA C N* CT Charmm 1.450000 2 180.000000
2457     NA C N* CM Charmm 1.450000 2 180.000000
2458     NC C N* CT Charmm 1.450000 2 180.000000
2459     NC C N* CM Charmm 1.450000 2 180.000000
2460     O C N* CT Charmm 1.450000 2 180.000000
2461     O C N* CM Charmm 1.450000 2 180.000000
2462     O C OH HO Charmm 1.900000 1 0.000000 2.3 2 180
2463     O C OS CT Charmm 1.400000 1 180.000000 2.7 2 180
2464     CT CA CA CA Charmm 3.625000 2 180.000000
2465     CT CA CA HA Charmm 3.625000 2 180.000000
2466     CA CA CA CA Charmm 3.625000 2 180.000000
2467     CA CA CA CB Charmm 3.625000 2 180.000000
2468     CA CA CA CN Charmm 3.625000 2 180.000000
2469     CA CA CA OH Charmm 3.625000 2 180.000000
2470     CA CA CA HA Charmm 3.625000 2 180.000000
2471     CB CA CA HA Charmm 3.625000 2 180.000000
2472     CN CA CA HA Charmm 3.625000 2 180.000000
2473     OH CA CA HA Charmm 3.625000 2 180.000000
2474     HA CA CA HA Charmm 3.625000 2 180.000000
2475     NC CA CM CM Charmm 2.550000 2 180.000000
2476     NC CA CM HA Charmm 2.550000 2 180.000000
2477     N2 CA CM CM Charmm 2.550000 2 180.000000
2478     N2 CA CM HA Charmm 2.550000 2 180.000000
2479     CA CA CB C* Charmm 3.500000 2 180.000000
2480     CA CA CB CN Charmm 3.500000 2 180.000000
2481     NC CA CB CB Charmm 3.500000 2 180.000000
2482     NC CA CB NB Charmm 3.500000 2 180.000000
2483     N2 CA CB CB Charmm 3.500000 2 180.000000
2484     N2 CA CB NB Charmm 3.500000 2 180.000000
2485     HA CA CB C* Charmm 3.500000 2 180.000000
2486     HA CA CB CN Charmm 3.500000 2 180.000000
2487     CA CA CN CB Charmm 3.625000 2 180.000000
2488     CA CA CN NA Charmm 3.625000 2 180.000000
2489     HA CA CN CB Charmm 3.625000 2 180.000000
2490     HA CA CN NA Charmm 3.625000 2 180.000000
2491     NC CA NA C Charmm 1.500000 2 180.000000
2492     NC CA NA H Charmm 1.500000 2 180.000000
2493     N2 CA NA C Charmm 1.500000 2 180.000000
2494     N2 CA NA H Charmm 1.500000 2 180.000000
2495     CM CA NC C Charmm 4.800000 2 180.000000
2496     CB CA NC CQ Charmm 4.800000 2 180.000000
2497     NA CA NC CB Charmm 4.800000 2 180.000000
2498     N2 CA NC C Charmm 4.800000 2 180.000000
2499     N2 CA NC CB Charmm 4.800000 2 180.000000
2500     N2 CA NC CQ Charmm 4.800000 2 180.000000
2501     CM CA N2 H Charmm 2.400000 2 180.000000
2502     CB CA N2 H Charmm 2.400000 2 180.000000
2503     NA CA N2 H Charmm 2.400000 2 180.000000
2504     NC CA N2 H Charmm 2.400000 2 180.000000
2505     N2 CA N2 CT Charmm 2.400000 2 180.000000
2506     N2 CA N2 H Charmm 2.400000 2 180.000000
2507     CA CA OH HO Charmm 0.900000 2 180.000000
2508     CT CM CM CT Charmm 1.900000 1 180.000000 6.65 2 180
2509     CT CM CM N* Charmm 6.650000 2 180.000000
2510     CT CM CM H4 Charmm 6.650000 2 180.000000
2511     C CM CM N* Charmm 6.650000 2 180.000000
2512     C CM CM H4 Charmm 6.650000 2 180.000000
2513     CA CM CM N* Charmm 6.650000 2 180.000000
2514     CA CM CM H4 Charmm 6.650000 2 180.000000
2515     HA CM CM N* Charmm 6.650000 2 180.000000
2516     HA CM CM H4 Charmm 6.650000 2 180.000000
2517     CM CM N* CT Charmm 1.850000 2 180.000000
2518     CM CM N* C Charmm 1.850000 2 180.000000
2519     H4 CM N* CT Charmm 1.850000 2 180.000000
2520     H4 CM N* C Charmm 1.850000 2 180.000000
2521     CT CC CV NB Charmm 5.150000 2 180.000000
2522     CT CC CV H4 Charmm 5.150000 2 180.000000
2523     NA CC CV NB Charmm 5.150000 2 180.000000
2524     NA CC CV H4 Charmm 5.150000 2 180.000000
2525     CT CC CW NA Charmm 5.375000 2 180.000000
2526     CT CC CW H4 Charmm 5.375000 2 180.000000
2527     NA CC CW NA Charmm 5.375000 2 180.000000
2528     NA CC CW H4 Charmm 5.375000 2 180.000000
2529     NB CC CW NA Charmm 5.375000 2 180.000000
2530     NB CC CW H4 Charmm 5.375000 2 180.000000
2531     CT CC NA CR Charmm 1.400000 2 180.000000
2532     CT CC NA H Charmm 1.400000 2 180.000000
2533     CV CC NA CR Charmm 1.400000 2 180.000000
2534     CV CC NA H Charmm 1.400000 2 180.000000
2535     CW CC NA CR Charmm 1.400000 2 180.000000
2536     CW CC NA H Charmm 1.400000 2 180.000000
2537     CT CC NB CR Charmm 2.400000 2 180.000000
2538     CW CC NB CR Charmm 2.400000 2 180.000000
2539     CC CV NB CR Charmm 2.400000 2 180.000000
2540     H4 CV NB CR Charmm 2.400000 2 180.000000
2541     NA CW C* CT Charmm 6.525000 2 180.000000
2542     NA CW C* CB Charmm 6.525000 2 180.000000
2543     H4 CW C* CT Charmm 6.525000 2 180.000000
2544     H4 CW C* CB Charmm 6.525000 2 180.000000
2545     CC CW NA CR Charmm 1.500000 2 180.000000
2546     CC CW NA H Charmm 1.500000 2 180.000000
2547     C* CW NA CN Charmm 1.500000 2 180.000000
2548     C* CW NA H Charmm 1.500000 2 180.000000
2549     H4 CW NA CR Charmm 1.500000 2 180.000000
2550     H4 CW NA CN Charmm 1.500000 2 180.000000
2551     H4 CW NA H Charmm 1.500000 2 180.000000
2552     NA CR NA CC Charmm 2.325000 2 180.000000
2553     NA CR NA CW Charmm 2.325000 2 180.000000
2554     NA CR NA H Charmm 2.325000 2 180.000000
2555     NB CR NA CC Charmm 2.325000 2 180.000000
2556     NB CR NA CW Charmm 2.325000 2 180.000000
2557     NB CR NA H Charmm 2.325000 2 180.000000
2558     H5 CR NA CC Charmm 2.325000 2 180.000000
2559     H5 CR NA CW Charmm 2.325000 2 180.000000
2560     H5 CR NA H Charmm 2.325000 2 180.000000
2561     NA CR NB CC Charmm 5.000000 2 180.000000
2562     NA CR NB CV Charmm 5.000000 2 180.000000
2563     H5 CR NB CC Charmm 5.000000 2 180.000000
2564     H5 CR NB CV Charmm 5.000000 2 180.000000
2565     C CB CB NC Charmm 5.450000 2 180.000000
2566     C CB CB N* Charmm 5.450000 2 180.000000
2567     CA CB CB NC Charmm 5.450000 2 180.000000
2568     CA CB CB N* Charmm 5.450000 2 180.000000
2569     NB CB CB NC Charmm 5.450000 2 180.000000
2570     NB CB CB N* Charmm 5.450000 2 180.000000
2571     CA CB C* CT Charmm 1.675000 2 180.000000
2572     CA CB C* CW Charmm 1.675000 2 180.000000
2573     CN CB C* CT Charmm 1.675000 2 180.000000
2574     CN CB C* CW Charmm 1.675000 2 180.000000
2575     CA CB CN CA Charmm 3.000000 2 180.000000
2576     CA CB CN NA Charmm 3.000000 2 180.000000
2577     C* CB CN CA Charmm 3.000000 2 180.000000
2578     C* CB CN NA Charmm 3.000000 2 180.000000
2579     C CB NB CK Charmm 2.550000 2 180.000000
2580     CA CB NB CK Charmm 2.550000 2 180.000000
2581     CB CB NB CK Charmm 2.550000 2 180.000000
2582     CB CB NC CA Charmm 4.150000 2 180.000000
2583     CB CB NC CQ Charmm 4.150000 2 180.000000
2584     N* CB NC CA Charmm 4.150000 2 180.000000
2585     N* CB NC CQ Charmm 4.150000 2 180.000000
2586     CB CB N* CT Charmm 1.650000 2 180.000000
2587     CB CB N* CK Charmm 1.650000 2 180.000000
2588     NC CB N* CT Charmm 1.650000 2 180.000000
2589     NC CB N* CK Charmm 1.650000 2 180.000000
2590     CA CN NA CW Charmm 1.525000 2 180.000000
2591     CA CN NA H Charmm 1.525000 2 180.000000
2592     CB CN NA CW Charmm 1.525000 2 180.000000
2593     CB CN NA H Charmm 1.525000 2 180.000000
2594     N* CK NB CB Charmm 10.000000 2 180.000000
2595     H5 CK NB CB Charmm 10.000000 2 180.000000
2596     NB CK N* CT Charmm 1.700000 2 180.000000
2597     NB CK N* CB Charmm 1.700000 2 180.000000
2598     H5 CK N* CT Charmm 1.700000 2 180.000000
2599     H5 CK N* CB Charmm 1.700000 2 180.000000
2600     NC CQ NC CA Charmm 6.800000 2 180.000000
2601     NC CQ NC CB Charmm 6.800000 2 180.000000
2602     H5 CQ NC CA Charmm 6.800000 2 180.000000
2603     H5 CQ NC CB Charmm 6.800000 2 180.000000
2604     HO OH P OS Charmm 0.250000 3 0.000000
2605     HO OH P O2 Charmm 0.250000 3 0.000000
2606     CT OS P OH Charmm 0.250000 3 0.000000 1.2 2 0
2607     CT OS P OS Charmm 0.250000 3 0.000000 1.2 2 0
2608     CT OS P O2 Charmm 0.250000 3 0.000000
2609     CT S S CT Charmm 3.500000 2 0.000000 0.6 3 0
2610 gezelter 1414 CT C OH HO Charmm 2.30000000 2 180.0
2611 gezelter 1270 end TorsionTypes
2612    
2613    
2614 gezelter 1278 begin InversionTypes
2615 cli2 1289 C CT N O AmberImproper 10.500000
2616     C CM NA O AmberImproper 10.500000
2617     C CB NA O AmberImproper 10.500000
2618     C N* NA O AmberImproper 10.500000
2619     C CT O2 O2 AmberImproper 10.500000
2620     CA CA CA CT AmberImproper 1.100000
2621     CA CA CA OH AmberImproper 1.100000
2622     CA CA CA HA AmberImproper 1.100000
2623     CA CN CA HA AmberImproper 1.100000
2624     CA NC CM N2 AmberImproper 1.100000
2625     CA CA CB HA AmberImproper 1.100000
2626     CA CB NC N2 AmberImproper 1.100000
2627     CA NA NC N2 AmberImproper 1.100000
2628     CA N2 N2 N2 AmberImproper 10.500000
2629     CM CM CA HA AmberImproper 1.100000
2630     CM C CM CT AmberImproper 1.100000
2631     CM C CM HA AmberImproper 1.100000
2632     CM N* CM H4 AmberImproper 1.100000
2633     CC NA CV CT AmberImproper 1.100000
2634     CC NA CW CT AmberImproper 1.100000
2635     CC NB CW CT AmberImproper 1.100000
2636     CV CC NB H4 AmberImproper 1.100000
2637     CW CC NA H4 AmberImproper 1.100000
2638     CW C* NA H4 AmberImproper 1.100000
2639     CR NA NA H5 AmberImproper 1.100000
2640     CR NB NA H5 AmberImproper 1.100000
2641     CR NA NB H5 AmberImproper 1.100000
2642     C* CW CB CT AmberImproper 1.100000
2643     CK NB N* H5 AmberImproper 1.100000
2644     CQ NC NC H5 AmberImproper 1.100000
2645     N C CT CT AmberImproper 1.000000
2646     N C CT H AmberImproper 1.000000
2647     N C H H AmberImproper 1.000000
2648     NA C C H AmberImproper 1.000000
2649     NA C CA H AmberImproper 1.000000
2650     NA CR CW H AmberImproper 1.000000
2651     NA CC CR H AmberImproper 1.000000
2652     NA CW CN H AmberImproper 1.000000
2653     N* CM C CT AmberImproper 1.000000
2654     N* CK CB CT AmberImproper 1.000000
2655     N2 CT CA H AmberImproper 1.000000
2656     N2 CA H H AmberImproper 1.000000
2657 gezelter 1414 C CT OH O2 AmberImproper 10.5
2658 gezelter 1278 end InversionTypes
2659 gezelter 1270