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root/OpenMD/branches/development/ac-tools/configure.in
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Comparing trunk/ac-tools/configure.in (file contents):
Revision 493 by gezelter, Wed Apr 13 22:30:22 2005 UTC vs.
Revision 1036 by gezelter, Mon Sep 4 13:37:15 2006 UTC

# Line 1 | Line 1 | dnl **** Process this file with autoconf to produce a
1   dnl **** Process this file with autoconf to produce a configure script.
2 <
3 < AC_INIT(OOPSE, 2.0, gezelter@nd.edu, oopse)
2 > AC_PREREQ(2.59)
3 > AC_INIT(OOPSE, 3.0, gezelter@nd.edu, oopse)
4   AC_CONFIG_AUX_DIR(ac-tools)
5 + AC_CONFIG_SRCDIR([src/applications/oopse/oopse.cpp])
6 + AC_CONFIG_HEADER([src/config.h])
7  
8 < builtin(include, ac-tools/fortran90.m4)
9 < builtin(include, ac-tools/aclocal.m4)
8 > builtin(include, ac-tools/OOPSE.m4)
9 > builtin(include, ac-tools/AC_CXX_HAVE_STL.m4)
10 > builtin(include, ac-tools/AC_CXX_NAMESPACES.m4)
11 > builtin(include, ac-tools/AC_CXX_STD.m4)
12  
13 < AC_CONFIG_SRCDIR([src/applications/oopse/oopse.cpp])
13 > # who am i
14 > AC_CANONICAL_HOST
15  
16   AC_PREFIX_DEFAULT("/usr/local")
17  
# Line 14 | Line 19 | AC_SUBST(PROGNAME)
19   PROGNAME="oopse"
20   AC_SUBST(PROGNAME)
21  
22 + AC_EXEEXT
23 + AC_OBJEXT
24 + OBJEXT=".$OBJEXT"
25 +
26 + OOPSE=oopse
27 +
28 + dnl **** define home dir of oopse
29 + if test "x${prefix}" = "xNONE"
30 + then
31 +  OOPSE_HOME=${ac_default_prefix}/oopse
32 + else
33 +  OOPSE_HOME=${prefix}/oopse
34 + fi
35 + AC_ARG_ENABLE(oopse-home,
36 + [  --enable-oopse-home=DIR      define oopse home dir [PREFIX/oopse]],
37 + [OOPSE_HOME="${enableval}"])
38 +
39   # there are two ways to do debugging.  One with the --enable-debug flag
40   # and one using the DEBUG environment variable
41  
# Line 25 | Line 47 | AC_SUBST(debug)
47   fi
48   AC_SUBST(debug)
49  
50 < # who am i
51 < AC_CANONICAL_HOST
50 > AC_ARG_ENABLE(single, [AC_HELP_STRING([--enable-single],[compile OOPSE in single precision])], ok=$enableval, ok=no)
51 > AC_ARG_ENABLE(float, [AC_HELP_STRING([--enable-float],[synonym for --enable-single])], ok=$enableval)
52 > if test "$ok" = "yes"; then
53 >        AC_DEFINE(SINGLE_PRECISION,1,[Define to compile in single precision.])
54 >        USE_SINGLE_PRECISION=yes
55 >        AC_SUBST(USE_SINGLE_PRECISION)
56 > fi
57  
58 <
59 <
60 < dnl Checks for C compiler
61 < AC_PROG_CC([icc xlc gcc cc])
62 <
63 < dnl Checks for C++ compiler
64 < AC_PROG_CXX([icpc icc xlc++ xlC CC g++ c++])
65 <
66 < dnl If we are not running g++ then we might need some other flags
67 < dnl to get the templates compiled correctly
68 < OOPSE_TEMPLATE_FLAGS=""
69 < if test $ac_cv_prog_gxx = no; then
70 <  AC_MSG_CHECKING([checking whether ${CXX} accepts -ptused -no_prelink])
71 <  echo 'void f(){}' > conftest.cc
72 <  if test -z "`${CXX} -ptused -no_prelink -c conftest.cc 2>&1`"; then
73 <    AC_MSG_RESULT(yes)
74 <    OOPSE_TEMPLATE_FLAGS="-ptused -no_prelink"
75 <  else
76 <    AC_MSG_RESULT(no)
77 <  fi
51 <  rm -f conftest*
52 <  AC_MSG_CHECKING([checking whether ${CXX} accepts -instances=static])
53 <  echo 'void f(){}' > conftest.cc
54 <  if test -z "`${CXX} -instances=static -c conftest.cc 2>&1`"; then
55 <    AC_MSG_RESULT(yes)
56 <    OOPSE_TEMPLATE_FLAGS="-instances=static"
57 <  else
58 <    AC_MSG_RESULT(no)
59 <  fi
60 <  rm -f conftest*
61 <  AC_MSG_CHECKING([checking whether ${CXX} accepts -pto])
62 <  echo 'void f(){}' > conftest.cc
63 <  if test -z "`${CXX} -pto -c conftest.cc 2>&1`"; then
64 <    AC_MSG_RESULT(yes)
65 <    OOPSE_TEMPLATE_FLAGS="-pto"
66 <  else
67 <    AC_MSG_RESULT(no)
68 <  fi
69 <  rm -f conftest*
70 <  AC_MSG_CHECKING([checking whether ${CXX} accepts -LANG:std])
71 <  echo 'void f(){}' > conftest.cc
72 <  if test -z "`${CXX} -LANG:std -c conftest.cc 2>&1`"; then
73 <    AC_MSG_RESULT(yes)
74 <    
75 <
76 <    EXTRA_CC_FLAG=${EXTRA_CC_FLAG}" -LANG:std"
77 <  else
78 <    AC_MSG_RESULT(no)
79 <  fi
58 > # Checks for programs.
59 > AC_PROG_CXX([mpicxx icpc pathCC pgCC c++ xlc++ xlC g++ CC])
60 > AC_PROG_CC([mpicc icc pathcc pgcc cc xlc gcc])
61 > AC_PROG_FC([mpif90 ifort ifc pathf95 pgf95 xlf95 lf95 epcf90 pathf90 xlf90 f95 f90 gfortran g95 fort], 95)
62 > AC_PROG_CPP
63 > AC_PROG_EGREP
64 > AC_PROG_LN_S
65 > AC_PROG_MAKE_SET
66 > AC_PROG_RANLIB
67 > AX_SYS_PERLSHARPBANG
68 > AC_PROG_INSTALL
69 > case "x$INSTALL" in
70 >   x/*) ;;
71 >   *) INSTALL=`pwd`/ac-tools/"shtool install -c" ;
72 > esac
73 > MKINSTALLDIRS=`pwd`/ac-tools/"shtool mkdir -p -f"
74 > AC_CHECK_PROG(AR, ar, ar, NONE)
75 > if test "$AR" = "NONE"; then
76 >  AC_CACHE_SAVE
77 >  exit 1
78   fi
79 < AC_SUBST(OOPSE_TEMPLATE_FLAGS)
80 < AC_SUBST(EXTRA_CC_FLAG)
79 > AC_PATH_PROG(PS, ps)
80 > AC_CACHE_CHECK([for POSIX or BSD ps syntax], ac_cv_prog_ps_syntax, [
81 >        if $PS ax -o rss > /dev/null 2>&1; then
82 >                ac_cv_prog_ps_ax=yes
83 >        else
84 >                ac_cv_prog_ps_ax=no
85 >        fi
86 >        if $PS -ef -o rss > /dev/null 2>&1; then
87 >                ac_cv_prog_ps_ef=yes
88 >        else
89 >                ac_cv_prog_ps_ef=no
90 >        fi
91 >        if test "$ac_cv_prog_ps_ax" = yes; then
92 >                ac_cv_prog_ps_syntax=BSD
93 >        else
94 >                if test "$ac_cv_prog_ps_ef" = yes; then
95 >                        ac_cv_prog_ps_syntax=POSIX
96 >                else
97 >                        AC_MSG_ERROR(Could not determine ps syntax)
98 >                fi
99 >        fi
100 > ])
101 > AC_DEFINE_UNQUOTED(PSCOMMAND, $PS, [Path to ps program])
102 > if test "$ac_cv_prog_ps_syntax" = BSD; then
103 >  AC_DEFINE(PSTYPE_IS_BSD, 1, [ps uses BSD-style arguments])
104 > else
105 >   if test "$ac_cv_prog_ps_syntax" = POSIX; then
106 >       AC_DEFINE(PSTYPE_IS_POSIX, 1, [ps uses POSIX-style arguments])
107 >   else
108 >       AC_MSG_ERROR(Unknown ps syntax type!)
109 >   fi
110 > fi
111  
112 < dnl Fortran 90 compilation checks are next
113 <
86 < AC_PROG_F90([ifort ifc f90 xlf90 pgf90 epcf90 f95 xlf95 lf95 fort g95])
112 > AC_LANG_PUSH(Fortran)
113 > AC_FC_SRCEXT(F90)
114   dnl Check the flag for Fortran90 preprocessing
115   ACX_PROG_F90_PREPFLAG
116   dnl Check to see if a flag is required for preprocessing defines
117   ACX_PROG_F90_PREPDEFFLAG
118 < AC_LANG_PUSH(Fortran 90)
119 < AC_LANG_PREPROC(Fortran 90)
120 < AC_F90_LIBRARY_LDFLAGS
121 < dnl How does Fortran mangle function names
95 < AC_F90_WRAPPERS
96 < AC_SUBST(F90_FUNC)
97 < AC_SUBST(F90_FUNC_)
118 > AC_FC_WRAPPERS
119 > AC_SUBST(FC_FUNC)
120 > AC_SUBST(FC_FUNC_)
121 > AC_FC_LIBRARY_LDFLAGS
122   dnl Fortran 90 module suffix
123   AC_CHECK_MODSUFFIX
124   dnl Fortran 90 module path specifier
# Line 115 | Line 139 | AC_LANG_POP
139   AC_SUBST(F90_MODULE_NAMES)
140   AC_LANG_POP
141  
142 < AC_LANG_PUSH(C)
143 < AC_CHECK_HEADERS(unistd.h sys/pstat.h sys/sysmp.h sys/sysinfo.h sys/table.h sys/param.h sys/sysctl.h sys/sytemcfg.h machine/hal_sysinfo.h)
144 < AC_CHECK_FUNCS(pstat_getstatic sysmp getsysinfo sysctl table)
142 > AC_LANG_C
143 >
144 > dnl Checks for libraries.
145 > AC_CHECK_LIB(m, asin, , exit)
146 > ACX_CHECK_ZLIB
147 > ACX_CHECK_FFTW
148 >
149 >
150 > # Checks for header files.
151 > AC_HEADER_STDC
152 > AC_CHECK_HEADERS([conio.h dlfcn.h fstream.h iostream.h libintl.h limits.h machine/hal_sysinfo.h math.h stddef.h stdio.h stdlib.h string.h strings.h strstream.h sys/param.h sys/pstat.h sys/sysmp.h sys/sysctl.h sys/sysinfo.h sys/systemcfg.h sys/table.h sys/time.h time.h unistd.h zlib.h])
153 >
154 > # Checks for typedefs, structures, and compiler characteristics.
155 > AC_HEADER_STDBOOL
156 > AC_C_CONST
157 > AC_C_INLINE
158 > AC_C_RESTRICT
159 > AC_TYPE_SIZE_T
160 > AC_HEADER_TIME
161 > AC_CHECK_TYPES(clock_t)
162 > AC_C_CONST
163 > AC_C_INLINE
164 >
165 > # Checks for library functions.
166 > AC_FUNC_MALLOC
167 > AC_FUNC_MEMCMP
168 > AC_FUNC_REALLOC
169 > AC_FUNC_SELECT_ARGTYPES
170 > AC_FUNC_STRFTIME
171 > AC_FUNC_STRTOD
172 > AC_CHECK_FUNCS([floor getpagesize gettimeofday memchr memmove memset pow pstat_getdynamic pstat_getstatic rint select snprintf sranddev sqrt strcasecmp strchr strdup stricmp strncasecmp strnicmp strrchr strstr strtol sysmp getsysinfo sysctl table])
173 >
174   # special check for _system_configuration because AIX <4.3.2 do not
175   # contain the `physmem' member.
176   AC_MSG_CHECKING([for external symbol _system_configuration])
# Line 131 | Line 184 | adl_FUNC_GETOPT_LONG
184   dnl check for system getopt
185   adl_FUNC_GETOPT_LONG
186  
187 + AC_LANG_CPLUSPLUS
188 + AC_CXX_NAMESPACES
189 + AC_CXX_STD
190 + AC_CHECK_HEADERS([ctype.h iostream fstream sstream strstream])
191 + # AC_CPP_FUNC
192 + # ------------------ #
193 + # Checks to see if ANSI C99 CPP variable __func__ works.
194 + # If not, perhaps __FUNCTION__ works instead.
195 + # If not, we'll just define __func__ to "".
196 + AC_DEFUN([AC_CPP_FUNC],
197 + [AC_REQUIRE([AC_PROG_CC_STDC])dnl
198 + AC_CACHE_CHECK([for an ANSI C99-conforming __func__], ac_cv_cpp_func,
199 + [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],
200 + [[const char *foo = __func__;]])],
201 +  [ac_cv_cpp_func=yes],
202 +  [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],
203 + [[const char *foo = __FUNCTION__;]])],
204 +  [ac_cv_cpp_func=__FUNCTION__],
205 +  [ac_cv_cpp_func=no])])])
206 + if test $ac_cv_cpp_func = __FUNCTION__; then
207 +  AC_DEFINE(__func__,__FUNCTION__,
208 +            [Define to __FUNCTION__ or "" if `__func__' does not conform to
209 + ANSI C.])
210 + elif test $ac_cv_cpp_func = no; then
211 +  AC_DEFINE(__func__,"",
212 +            [Define to __FUNCTION__ or "" if `__func__' does not conform to
213 + ANSI C.])
214 + fi
215 + ])# AC_CPP_FUNC
216 +
217 + AC_CPP_FUNC
218 + AC_SUBST(__func__)
219 +
220 +
221   dnl check for strong optimization options
222  
223   case $debug in
224    1)
225       ;;
226    *)
227 +   ACX_PROG_FC_MAXOPT
228     ACX_PROG_CC_MAXOPT
229     ACX_PROG_CXX_MAXOPT
142 –   ACX_PROG_F90_MAXOPT
230       ;;
231   esac
232  
233 < AC_PROG_INSTALL
234 < AC_PROG_LN_S
148 < AC_PROG_MAKE_SET
149 < AC_PROG_RANLIB
150 < AC_PROG_YACC
151 < AC_PROG_LEX
152 < AC_CHECK_PROG(AR, ar, ar, NONE)
153 < if test "$AR" = "NONE"; then
154 <  AC_MSG_ERROR(--> Can't find \`ar'!)
155 <  AC_CACHE_SAVE
156 <  exit 1
157 < fi
233 > dnl OpenBabel needs this:
234 > AC_DEFINE([OBAPI], [], [Used to export symbols for DLL / shared library builds])
235  
159 – AC_PATH_PROG(PS, ps)
160 – AC_CACHE_CHECK([for POSIX or BSD ps syntax], ac_cv_prog_ps_syntax, [
161 –        if $PS ax -o rss > /dev/null 2>&1; then
162 –                ac_cv_prog_ps_ax=yes
163 –        else
164 –                ac_cv_prog_ps_ax=no
165 –        fi
166 –        if $PS -ef -o rss > /dev/null 2>&1; then
167 –                ac_cv_prog_ps_ef=yes
168 –        else
169 –                ac_cv_prog_ps_ef=no
170 –        fi
171 –        if test "$ac_cv_prog_ps_ax" = yes; then
172 –                ac_cv_prog_ps_syntax=BSD
173 –        else
174 –                if test "$ac_cv_prog_ps_ef" = yes; then
175 –                        ac_cv_prog_ps_syntax=POSIX
176 –                else
177 –                        AC_MSG_ERROR(Could not determine ps syntax)
178 –                fi
179 –        fi
180 – ])
236  
182 – AC_DEFINE_UNQUOTED(PSCOMMAND, $PS, [Path to ps program])
183 –
184 – if test "$ac_cv_prog_ps_syntax" = BSD; then
185 –  AC_DEFINE(PSTYPE_IS_BSD, 1)
186 – else
187 –   if test "$ac_cv_prog_ps_syntax" = POSIX; then
188 –       AC_DEFINE(PSTYPE_IS_POSIX, 1)
189 –   else
190 –       AC_MSG_ERROR(Unknown ps syntax type!)
191 –   fi
192 – fi
193 –
237   AC_ARG_WITH(mpi,
238          [AC_HELP_STRING([--with-mpi=<prefix>],
239                  [compile with MPI installed in <prefix> [default=no]])],
# Line 210 | Line 253 | AC_SUBST(USE_MPI)
253   fi
254   AC_SUBST(USE_MPI)
255  
213 – dnl AC_ARG_WITH(sprng,
214 – dnl     [AC_HELP_STRING([--with-sprng=<prefix>],
215 – dnl             [compile with SPRNG installed in <prefix> [default=/usr/local]])],
216 – dnl     with_sprng=$withval,
217 – dnl     with_sprng="/usr/local")
218 – dnl
219 – dnl case "x$with_sprng" in
220 – dnl        xyes | "x")  USE_SPRNG=yes;;
221 – dnl        xno) USE_SPRNG=no ;;
222 – dnl        *) SPRNG="$with_sprng"; USE_SPRNG=yes ;;
223 – dnl esac
224 – dnl if test "$USE_SPRNG" = "yes" -a -z "$with_sprng"; then
225 – dnl        SPRNG="/usr/local"
226 – dnl fi
227 – dnl if test "$USE_SPRNG" = "yes"; then
228 – dnl         ACX_SPRNG
229 – dnl fi
230 – dnl AC_SUBST(USE_SPRNG)
231 –
256   dnl ########################################
257   dnl # Check for CGAL headers and libraries #
258   dnl ########################################
# Line 243 | Line 267 | if test "x$cgal_makefile" != xno; then
267      cgal_makefile="$CGAL_MAKEFILE"
268    fi
269  
270 <  echo "cgal_makefile      $cgal_makefile"
270 >  AC_MSG_CHECKING(for cgal_makefile: $cgal_makefile)
271  
272    if test -f "$cgal_makefile"; then
273  
# Line 305 | Line 329 | EOF
329        GMP_RLIBDIR=""
330      fi
331  
332 <    echo "CGAL_OS_COMPILER   $CGAL_OS_COMPILER"
333 <    echo "CGAL_INCLDIR       $CGAL_INCLDIR"
334 <    echo "CGAL_INCLCONFDIR   $CGAL_INCLCONFDIR"
335 <    echo "CGAL_LIBDIR        $CGAL_LIBDIR"
336 <    echo "CGAL_CXXFLAGS      $CGAL_CXXFLAGS"
337 <    echo "LEDA_INCLDIR       $LEDA_INCLDIR"
338 <    echo "LEDA_LIBDIR        $LEDA_LIBDIR"
339 <    echo "GMP_INCLDIR        $GMP_INCLDIR"
340 <    echo "GMP_LIBDIR         $GMP_LIBDIR"
332 >    AC_MSG_RESULT(CGAL_OS_COMPILER=   $CGAL_OS_COMPILER)
333 >    AC_MSG_RESULT(CGAL_INCLDIR=       $CGAL_INCLDIR)
334 >    AC_MSG_RESULT(CGAL_INCLCONFDIR=   $CGAL_INCLCONFDIR)
335 >    AC_MSG_RESULT(CGAL_LIBDIR=        $CGAL_LIBDIR)
336 >    AC_MSG_RESULT(CGAL_CXXFLAGS=      $CGAL_CXXFLAGS)
337 >    AC_MSG_RESULT(LEDA_INCLDIR=       $LEDA_INCLDIR)
338 >    AC_MSG_RESULT(LEDA_LIBDIR=        $LEDA_LIBDIR)
339 >    AC_MSG_RESULT(GMP_INCLDIR=        $GMP_INCLDIR)
340 >    AC_MSG_RESULT(GMP_LIBDIR=         $GMP_LIBDIR)
341  
342      AC_LANG_PUSH(C++)
343      save_CXXFLAGS="$CXXFLAGS"
# Line 366 | Line 390 | changequote([, ])dnl
390  
391        CGAL_CXXFLAGS="-ftemplate-depth-50"
392  
393 <      echo "CGAL_USES_LEDA     $CGAL_USES_LEDA"
394 <      echo "CGAL_USES_GMP      $CGAL_USES_GMP"
395 <      echo "CGAL_INCLDIR       $CGAL_INCLDIR"
396 <      echo "CGAL_LIBDIR        $CGAL_LIBDIR"
397 <      echo "CGAL_DEFINES       $CGAL_DEFINES"
398 <      echo "CGAL_CXXFLAGS      $CGAL_CXXFLAGS"
399 <      echo "CGAL_LIBS          $CGAL_LIBS"
393 >      AC_MSG_RESULT(CGAL_USES_LEDA=     $CGAL_USES_LEDA)
394 >      AC_MSG_RESULT(CGAL_USES_GMP =     $CGAL_USES_GMP)
395 >      AC_MSG_RESULT(CGAL_INCLDIR  =     $CGAL_INCLDIR)
396 >      AC_MSG_RESULT(CGAL_LIBDIR   =     $CGAL_LIBDIR)
397 >      AC_MSG_RESULT(CGAL_DEFINES  =     $CGAL_DEFINES)
398 >      AC_MSG_RESULT(CGAL_CXXFLAGS =     $CGAL_CXXFLAGS)
399 >      AC_MSG_RESULT(CGAL_LIBS     =     $CGAL_LIBS)
400      fi
401  
402      if test "x$cgal" = xyes; then
# Line 407 | Line 431 | else
431    fi
432   else
433     if test "x$cgal_makefile" != xno; then
434 <    AC_MSG_WARN(*********************************************************)
411 <    AC_MSG_WARN(*** Warning: CGAL was not found.                      ***)
412 <    AC_MSG_WARN(*** Run \"configure\" with the appropriate options.     ***)
413 <    AC_MSG_WARN(*** CGAL support will be disabled.                    ***)
414 <    AC_MSG_WARN(*********************************************************)
434 >    AC_MSG_RESULT(No CGAL support. These are not the droids you want.)
435    fi
436    CGAL_INCLDIR=
437    CGAL_LIBDIR=
# Line 432 | Line 452 | AC_SUBST(CGAL_LIBS)
452   AC_SUBST(CGAL_CXXFLAGS)
453   AC_SUBST(CGAL_LIBS)
454  
435 – dnl CHECK_MKL
436 –
455   BB_ENABLE_DOXYGEN
456  
439 – AC_EXEEXT
440 – AC_OBJEXT
441 – OBJEXT=".$OBJEXT"
442 –
443 – OOPSE=oopse
444 –
445 – dnl **** define home dir of oopse
446 – if test "x${prefix}" = "xNONE"
447 – then
448 –  OOPSE_HOME=${ac_default_prefix}/oopse
449 – else
450 –  OOPSE_HOME=${prefix}/oopse
451 – fi
452 – AC_ARG_ENABLE(oopse-home,
453 – [  --enable-oopse-home=DIR      define oopse home dir [PREFIX/oopse]],
454 – [OOPSE_HOME="${enableval}"])
455 –
456 – case "x$INSTALL" in
457 –   x/*) ;;
458 –   *) INSTALL=`pwd`/ac-tools/"shtool install -c" ;
459 – esac
460 –
461 – MKINSTALLDIRS=`pwd`/ac-tools/"shtool mkdir -p -f"
462 –
463 – dnl **** Define CFLAGS etc empty to prevent configure from setting them
464 – CFLAGS=${CFLAGS-""}
465 – CXXFLAGS=${CXXFLAGS-""}
466 – CPPFLAGS=${CPPFLAGS-""}
467 – FFLAGS=${FFLAGS-""}
468 – F90FLAGS=${F90FLAGS-""}
469 – LDFLAGS=${LDFLAGS-""}
470 – DEBUG=${DEBUG-"-g"}
471 –
472 – case $debug in
473 –  1)
474 –     FFLAGS="$DEBUG $FFLAGS"
475 –     F90FLAGS="$DEBUG $F90FLAGS"
476 –     ;;
477 –  *)
478 –     ;;
479 – esac
480 –
481 –
457   AC_SUBST(EXEEXT)
458   AC_SUBST(OBJEXT)
459   AC_SUBST(BATEXT)
# Line 489 | Line 464 | AC_SUBST(CPPFLAGS)
464   AC_SUBST(CFLAGS)
465   AC_SUBST(CXXFLAGS)
466   AC_SUBST(CPPFLAGS)
467 < AC_SUBST(FFLAGS)
493 < AC_SUBST(F90FLAGS)
467 > AC_SUBST(FCFLAGS)
468   AC_SUBST(LDFLAGS)
495 – AC_SUBST(PREPFLAG)
469   AC_SUBST(PREPDEFFLAG)
470   AC_SUBST(F90_MODULE_NAMES)
471 < AC_CONFIG_HEADER([src/config.h])
499 < AC_CONFIG_FILES([make/Makefile src/utils/Makefile src/applications/nanoRodBuilder/Makefile])
471 > AC_CONFIG_FILES([make/Makefile src/utils/Makefile src/applications/nanoRodBuilder/Makefile src/applications/utilities/affineScale src/applications/utilities/waterBoxer scripts/filepp], [chmod 0755 scripts/*])
472  
473   AC_OUTPUT

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