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root/OpenMD/branches/development/ac-tools/configure.in
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Comparing trunk/ac-tools/configure.in (file contents):
Revision 1036 by gezelter, Mon Sep 4 13:37:15 2006 UTC vs.
Revision 1390 by gezelter, Wed Nov 25 20:02:06 2009 UTC

# Line 1 | Line 1 | AC_PREREQ(2.59)
1   dnl **** Process this file with autoconf to produce a configure script.
2   AC_PREREQ(2.59)
3 < AC_INIT(OOPSE, 3.0, gezelter@nd.edu, oopse)
3 > AC_INIT(OpenMD, 1.0, gezelter@nd.edu, openmd)
4   AC_CONFIG_AUX_DIR(ac-tools)
5 < AC_CONFIG_SRCDIR([src/applications/oopse/oopse.cpp])
5 > AC_CONFIG_SRCDIR([src/applications/openmd/openmd.cpp])
6   AC_CONFIG_HEADER([src/config.h])
7  
8 < builtin(include, ac-tools/OOPSE.m4)
8 > builtin(include, ac-tools/OpenMD.m4)
9   builtin(include, ac-tools/AC_CXX_HAVE_STL.m4)
10   builtin(include, ac-tools/AC_CXX_NAMESPACES.m4)
11   builtin(include, ac-tools/AC_CXX_STD.m4)
12 + builtin(include, ac-tools/ax_mpi.m4)
13  
14   # who am i
15   AC_CANONICAL_HOST
# Line 16 | Line 17 | AC_PREFIX_DEFAULT("/usr/local")
17   AC_PREFIX_DEFAULT("/usr/local")
18  
19   # set program name
20 < PROGNAME="oopse"
20 > PROGNAME="openmd"
21   AC_SUBST(PROGNAME)
22  
23   AC_EXEEXT
24   AC_OBJEXT
25   OBJEXT=".$OBJEXT"
26  
27 < OOPSE=oopse
27 > OPENMD=openmd
28  
29 < dnl **** define home dir of oopse
29 > dnl **** define home dir of OpenMD
30   if test "x${prefix}" = "xNONE"
31   then
32 <  OOPSE_HOME=${ac_default_prefix}/oopse
32 >  OPENMD_HOME=${ac_default_prefix}/openmd
33   else
34 <  OOPSE_HOME=${prefix}/oopse
34 >  OPENMD_HOME=${prefix}/openmd
35   fi
36 < AC_ARG_ENABLE(oopse-home,
37 < [  --enable-oopse-home=DIR      define oopse home dir [PREFIX/oopse]],
38 < [OOPSE_HOME="${enableval}"])
36 > AC_ARG_ENABLE(openmd-home,
37 > [  --enable-openmd-home=DIR      define OpenMD home dir [PREFIX/openmd]],
38 > [OPENMD_HOME="${enableval}"])
39  
40   # there are two ways to do debugging.  One with the --enable-debug flag
41   # and one using the DEBUG environment variable
42  
43   debug=0
44 < AC_ARG_ENABLE(debug, AC_HELP_STRING([--enable-debug], [Compile OOPSE in debug mode]), [debug=1])
44 > AC_ARG_ENABLE(debug, AC_HELP_STRING([--enable-debug], [Compile OpenMD in debug mode]), [debug=1])
45   if test "${DEBUG}"; then
46          AC_DEFINE(debug, 1, [Code compiled in debug mode])
47    msg="$msg, debug mode"
48   fi
49   AC_SUBST(debug)
50  
51 < AC_ARG_ENABLE(single, [AC_HELP_STRING([--enable-single],[compile OOPSE in single precision])], ok=$enableval, ok=no)
51 > AC_ARG_ENABLE(single, [AC_HELP_STRING([--enable-single],[compile OpenMD in single precision])], ok=$enableval, ok=no)
52   AC_ARG_ENABLE(float, [AC_HELP_STRING([--enable-float],[synonym for --enable-single])], ok=$enableval)
53   if test "$ok" = "yes"; then
54          AC_DEFINE(SINGLE_PRECISION,1,[Define to compile in single precision.])
# Line 55 | Line 56 | fi
56          AC_SUBST(USE_SINGLE_PRECISION)
57   fi
58  
59 + if test x"$CC" != x; then
60 +   AC_CHECK_PROGS(ac_cc_set,[$CC],[no])
61 +   AS_IF([test AS_VAR_GET([ac_cc_set]) != no],[
62 +     AC_PATH_PROG(ac_cc_path,[$ac_cc_set],[no])],[
63 +     AC_ERROR([Specified C compiler $CC doesn't seem to exist!])])
64 +
65 +   AS_IF([test AS_VAR_GET([ac_cc_path]) != no],[
66 +     AC_MSG_NOTICE([Will attempt to use $CC as C compiler])
67 +     MPICC=$CC
68 +   ],[
69 +     AC_ERROR([Can't find path to user-specified C compiler $CC])])
70 + fi
71 +
72 + if test x"$CXX" != x; then
73 +   AC_CHECK_PROGS(ac_cxx_set,[$CXX],[no])
74 +   AS_IF([test AS_VAR_GET([ac_cxx_set]) != no],[
75 +     AC_PATH_PROG(ac_cxx_path,[$ac_cxx_set],[no])],[
76 +     AC_ERROR([Specified C++ compiler $CXX doesn't seem to exist!])])
77 +
78 +   AS_IF([test AS_VAR_GET([ac_cxx_path]) != no],[
79 +     AC_MSG_NOTICE([Will attempt to use $CXX as C++ compiler])
80 +     MPICXX=$CXX
81 +    ],[
82 +     AC_ERROR([Can't find path to user-specified C++ compiler $CXX])])
83 + fi
84 +
85 + if test x"$FC" != x; then
86 +   AC_CHECK_PROGS(ac_fc_set,[$FC],[no])
87 +   AS_IF([test AS_VAR_GET([ac_fc_set]) != no],[
88 +     AC_PATH_PROG(ac_fc_path,[$ac_fc_set],[no])],[
89 +     AC_ERROR([Specified Fortran compiler $FC doesn't seem to exist!])])
90 +
91 +   AS_IF([test AS_VAR_GET([ac_fc_path]) != no],[
92 +     AC_MSG_NOTICE([Will attempt to use $FC as Fortran compiler])
93 +     MPIFC=$FC
94 +   ],[
95 +     AC_ERROR([Can't find path to user-specified Fortran compiler $FC])])
96 + fi
97 +
98 +
99 + dnl do MPI checks
100 + AC_LANG([C++])
101 + AX_MPI([USE_MPI="yes"],
102 +       [USE_MPI="no"
103 +       AC_MSG_WARN([No suitable C++ MPI implementation found. openmd_MPI will not be built.])])
104 + AS_IF([test AS_VAR_GET([USE_MPI]) != no],[
105 + AC_LANG([C])
106 + AX_MPI([USE_MPI="yes"],
107 +       [USE_MPI="no"
108 +       AC_MSG_WARN([No suitable C MPI implementation found. openmd_MPI will not be built.])])
109 + ])
110 + AS_IF([test AS_VAR_GET([USE_MPI]) != no],[
111 + AC_LANG([Fortran])
112 + AX_MPI([USE_MPI="yes"],
113 +       [USE_MPI="no"
114 +       AC_MSG_WARN([No suitable Fortran MPI implementation found. openmd_MPI will not be built.])])
115 + ])
116 + AS_IF([test AS_VAR_GET([USE_MPI]) != no],[
117 +        CXX=$MPICXX
118 +        CC=$MPICC
119 +        FC=$MPIFC
120 + ])
121 + AC_SUBST(USE_MPI)
122 +
123   # Checks for programs.
124 < AC_PROG_CXX([mpicxx icpc pathCC pgCC c++ xlc++ xlC g++ CC])
125 < AC_PROG_CC([mpicc icc pathcc pgcc cc xlc gcc])
126 < AC_PROG_FC([mpif90 ifort ifc pathf95 pgf95 xlf95 lf95 epcf90 pathf90 xlf90 f95 f90 gfortran g95 fort], 95)
124 > AC_PROG_CXX([$CXX icpc pathCC pgCC c++ xlc++ xlC g++ CC])
125 > AC_PROG_CC([$CC icc pathcc pgcc cc xlc gcc])
126 > AC_PROG_FC([$FC ifort ifc pathf95 pgf95 xlf95 lf95 epcf90 pathf90 xlf90 f95 f90 gfortran g95 fort], 95)
127   AC_PROG_CPP
128   AC_PROG_EGREP
129   AC_PROG_LN_S
# Line 145 | Line 210 | ACX_CHECK_FFTW
210   AC_CHECK_LIB(m, asin, , exit)
211   ACX_CHECK_ZLIB
212   ACX_CHECK_FFTW
213 + ACX_CHECK_QHULL
214 + ACX_CHECK_OPENBABEL
215  
149
216   # Checks for header files.
217   AC_HEADER_STDC
218 < AC_CHECK_HEADERS([conio.h dlfcn.h fstream.h iostream.h libintl.h limits.h machine/hal_sysinfo.h math.h stddef.h stdio.h stdlib.h string.h strings.h strstream.h sys/param.h sys/pstat.h sys/sysmp.h sys/sysctl.h sys/sysinfo.h sys/systemcfg.h sys/table.h sys/time.h time.h unistd.h zlib.h])
218 > AC_CHECK_HEADERS([libintl.h limits.h machine/hal_sysinfo.h stdlib.h string.h strings.h sys/param.h sys/pstat.h sys/sysctl.h sys/sysinfo.h sys/sysmp.h sys/systemcfg.h sys/table.h sys/time.h unistd.h])
219  
220   # Checks for typedefs, structures, and compiler characteristics.
221   AC_HEADER_STDBOOL
222   AC_C_CONST
223   AC_C_INLINE
158 AC_C_RESTRICT
224   AC_TYPE_SIZE_T
225   AC_HEADER_TIME
161 AC_CHECK_TYPES(clock_t)
162 AC_C_CONST
163 AC_C_INLINE
226  
227   # Checks for library functions.
228   AC_FUNC_MALLOC
167 AC_FUNC_MEMCMP
229   AC_FUNC_REALLOC
230   AC_FUNC_SELECT_ARGTYPES
170 AC_FUNC_STRFTIME
231   AC_FUNC_STRTOD
232 < AC_CHECK_FUNCS([floor getpagesize gettimeofday memchr memmove memset pow pstat_getdynamic pstat_getstatic rint select snprintf sranddev sqrt strcasecmp strchr strdup stricmp strncasecmp strnicmp strrchr strstr strtol sysmp getsysinfo sysctl table])
232 > AC_CHECK_FUNCS([floor getpagesize gettimeofday memset pow pstat_getdynamic pstat_getstatic select sqrt strcasecmp strchr strdup stricmp strncasecmp strnicmp strstr strtol sysmp getsysinfo sysctl table])
233  
234   # special check for _system_configuration because AIX <4.3.2 do not
235   # contain the `physmem' member.
# Line 181 | Line 241 | AC_TRY_COMPILE([#include <sys/systemcfg.h>],
241              [Define if you have the _system_configuration variable.])],
242    [AC_MSG_RESULT([no])])
243  
184 dnl check for system getopt
185 adl_FUNC_GETOPT_LONG
186
187 AC_LANG_CPLUSPLUS
188 AC_CXX_NAMESPACES
189 AC_CXX_STD
190 AC_CHECK_HEADERS([ctype.h iostream fstream sstream strstream])
191 # AC_CPP_FUNC
192 # ------------------ #
193 # Checks to see if ANSI C99 CPP variable __func__ works.
194 # If not, perhaps __FUNCTION__ works instead.
195 # If not, we'll just define __func__ to "".
196 AC_DEFUN([AC_CPP_FUNC],
197 [AC_REQUIRE([AC_PROG_CC_STDC])dnl
198 AC_CACHE_CHECK([for an ANSI C99-conforming __func__], ac_cv_cpp_func,
199 [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],
200 [[const char *foo = __func__;]])],
201  [ac_cv_cpp_func=yes],
202  [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],
203 [[const char *foo = __FUNCTION__;]])],
204  [ac_cv_cpp_func=__FUNCTION__],
205  [ac_cv_cpp_func=no])])])
206 if test $ac_cv_cpp_func = __FUNCTION__; then
207  AC_DEFINE(__func__,__FUNCTION__,
208            [Define to __FUNCTION__ or "" if `__func__' does not conform to
209 ANSI C.])
210 elif test $ac_cv_cpp_func = no; then
211  AC_DEFINE(__func__,"",
212            [Define to __FUNCTION__ or "" if `__func__' does not conform to
213 ANSI C.])
214 fi
215 ])# AC_CPP_FUNC
216
217 AC_CPP_FUNC
218 AC_SUBST(__func__)
219
220
244   dnl check for strong optimization options
245  
246   case $debug in
# Line 230 | Line 253 | esac
253       ;;
254   esac
255  
233 dnl OpenBabel needs this:
234 AC_DEFINE([OBAPI], [], [Used to export symbols for DLL / shared library builds])
235
236
237 AC_ARG_WITH(mpi,
238        [AC_HELP_STRING([--with-mpi=<prefix>],
239                [compile with MPI installed in <prefix> [default=no]])],
240        with_mpi=$withval,
241        with_mpi="no")
242
243 case "x$with_mpi" in
244        xyes | "x")  USE_MPI=yes;;
245        xno) USE_MPI=no ;;
246        *) MPI="$with_mpi"; USE_MPI=yes ;;
247 esac
248 if test "$USE_MPI" = "yes" -a -z "$with_mpi"; then
249        MPI="/usr/local"
250 fi
251 if test "$USE_MPI" = "yes"; then
252        ACX_MPI
253 fi
254 AC_SUBST(USE_MPI)
255
256 dnl ########################################
257 dnl # Check for CGAL headers and libraries #
258 dnl ########################################
259
260 USE_CGAL=no
261 cgal_makefile=auto
262 AC_ARG_WITH(cgal-makefile,[  --with-cgal-makefile=FILE  CGAL makefile that should be used],       cgal_makefile="$withval")
263
264 if test "x$cgal_makefile" != xno; then
265
266  if test "x$cgal_makefile" = xauto -a "x$CGAL_MAKEFILE" != x; then
267    cgal_makefile="$CGAL_MAKEFILE"
268  fi
269
270  AC_MSG_CHECKING(for cgal_makefile: $cgal_makefile)
271
272  if test -f "$cgal_makefile"; then
273
274    cat >config.tmp.Makefile <<EOF
275 include $cgal_makefile
276 default:
277        @echo CGAL_OS_COMPILER=\"\${CGAL_OS_COMPILER}\" >config.tmp.cgalvariables
278        @echo CGAL_INCLDIR=\"\${CGAL_INCL_DIR}\" >>config.tmp.cgalvariables
279        @echo CGAL_INCLCONFDIR=\"\${CGAL_INCL_CONF_DIR}\" >>config.tmp.cgalvariables
280        @echo CGAL_LIBDIR=\"\${CGAL_LIB_DIR}/\${CGAL_OS_COMPILER}\" >>config.tmp.cgalvariables
281        @echo CGAL_RLIBDIR=\"\${CGAL_LIB_DIR}/\${CGAL_OS_COMPILER}\" >>config.tmp.cgalvariables
282        @echo CGAL_CXXFLAGS=\"\${CGAL_CXXFLAGS}\" >>config.tmp.cgalvariables
283        @echo GMP_INCLDIR=\"\${GMP_INCL_DIR}\" >>config.tmp.cgalvariables
284        @echo GMP_LIBDIR=\"\${GMP_LIB_DIR}\" >>config.tmp.cgalvariables
285        @echo GMP_RLIBDIR=\"\${GMP_LIB_DIR}\" >>config.tmp.cgalvariables
286        @echo LEDA_INCLDIR=\"\${LEDA_INCL_DIR}\" >>config.tmp.cgalvariables
287        @echo LEDA_LIBDIR=\"\${LEDA_LIB_DIR}\" >>config.tmp.cgalvariables
288        @echo LEDA_RLIBDIR=\"\${LEDA_LIB_DIR}\" >>config.tmp.cgalvariables
289 EOF
290
291    make -s -f config.tmp.Makefile
292    . config.tmp.cgalvariables
293
294    rm -f config.tmp.Makefile config.tmp.cgalvariables
295
296    if test "x$CGAL_INCLDIR" = "x"; then
297      CGAL_INCLDIR=""
298    fi
299
300    if test "x$CGAL_LIBDIR" = "x"; then
301      CGAL_LIBDIR=""
302    fi
303
304    if test "x$CGAL_RLIBDIR" = "x"; then
305      CGAL_RLIBDIR=""
306    fi
307
308    if test "x$LEDA_INCLDIR" = "x"; then
309      LEDA_INCLDIR=""
310    fi
311
312    if test "x$LEDA_LIBDIR" = "x"; then
313      LEDA_LIBDIR=""
314    fi
315
316    if test "x$LEDA_RLIBDIR" = "x"; then
317      LEDA_RLIBDIR=""
318    fi
319
320    if test "x$GMP_INCLDIR" = "x"; then
321      GMP_INCLDIR=""
322    fi
323
324    if test "x$GMP_LIBDIR" = "x"; then
325      GMP_LIBDIR=""
326    fi
327
328    if test "x$GMP_RLIBDIR" = "x"; then
329      GMP_RLIBDIR=""
330    fi
331
332    AC_MSG_RESULT(CGAL_OS_COMPILER=   $CGAL_OS_COMPILER)
333    AC_MSG_RESULT(CGAL_INCLDIR=       $CGAL_INCLDIR)
334    AC_MSG_RESULT(CGAL_INCLCONFDIR=   $CGAL_INCLCONFDIR)
335    AC_MSG_RESULT(CGAL_LIBDIR=        $CGAL_LIBDIR)
336    AC_MSG_RESULT(CGAL_CXXFLAGS=      $CGAL_CXXFLAGS)
337    AC_MSG_RESULT(LEDA_INCLDIR=       $LEDA_INCLDIR)
338    AC_MSG_RESULT(LEDA_LIBDIR=        $LEDA_LIBDIR)
339    AC_MSG_RESULT(GMP_INCLDIR=        $GMP_INCLDIR)
340    AC_MSG_RESULT(GMP_LIBDIR=         $GMP_LIBDIR)
341
342    AC_LANG_PUSH(C++)
343    save_CXXFLAGS="$CXXFLAGS"
344    CXXFLAGS="$CXXFLAGS -I$CGAL_INCLDIR -I$CGAL_INCLCONFDIR"
345    AC_CHECK_HEADER(CGAL/Cartesian.h, cgal=yes, cgal=no)
346    CXXFLAGS="$save_CXXFLAGS"
347
348    if test "x$cgal" = xyes; then
349      AC_MSG_CHECKING([for CGAL version])
350      LOCATION=${CGAL_INCLDIR}
351      LOCATION=${LOCATION:-/usr/include}
352      if test -f $LOCATION/CGAL/version.h; then
353        CGAL_VERSION=`grep '#define.*\<CGAL_VERSION\>.*' $LOCATION/CGAL/version.h | sed 's/[^0-9\.]*//g'`
354      else
355        CGAL_VERSION=`grep '#define.*\<CGAL_VERSION\>.*' $LOCATION/CGAL/config.h | sed 's/[^0-9\.]*//g'`
356      fi
357 changequote({, })dnl
358      if echo $CGAL_VERSION | grep -q "^[3456789]"; then
359 changequote([, ])dnl
360        AC_MSG_RESULT([($CGAL_VERSION) yes])
361      else
362        AC_MSG_RESULT([($CGAL_VERSION) no])
363        cgal=no
364      fi
365    fi
366
367    if test "x$cgal" = xyes; then
368      CGAL_LIBS="-lCGAL"
369      AC_MSG_CHECKING([whether CGAL uses LEDA])
370      if echo $CGAL_CXXFLAGS | grep -q -- -DCGAL_USE_LEDA; then
371        CGAL_USES_LEDA=yes
372        AC_MSG_RESULT([yes])
373        CGAL_DEFINES="-DCGAL_USE_LEDA -DLEDA_PREFIX"
374      else
375        AC_MSG_RESULT([no])
376        CGAL_USES_LEDA=no
377      fi
378
379      AC_MSG_CHECKING([whether CGAL uses GMP])
380      if echo $CGAL_CXXFLAGS | grep -q -- -DCGAL_USE_GMP; then
381        CGAL_USES_GMP=yes
382        AC_MSG_RESULT([yes])
383        CGAL_DEFINES="-DCGAL_USE_GMP $CGAL_DEFINES"
384      else
385        AC_MSG_RESULT([no])
386        CGAL_USES_GMP=no
387      fi
388
389      CGAL_LIBS="$CGAL_LIBS -lm"
390
391      CGAL_CXXFLAGS="-ftemplate-depth-50"
392
393      AC_MSG_RESULT(CGAL_USES_LEDA=     $CGAL_USES_LEDA)
394      AC_MSG_RESULT(CGAL_USES_GMP =     $CGAL_USES_GMP)
395      AC_MSG_RESULT(CGAL_INCLDIR  =     $CGAL_INCLDIR)
396      AC_MSG_RESULT(CGAL_LIBDIR   =     $CGAL_LIBDIR)
397      AC_MSG_RESULT(CGAL_DEFINES  =     $CGAL_DEFINES)
398      AC_MSG_RESULT(CGAL_CXXFLAGS =     $CGAL_CXXFLAGS)
399      AC_MSG_RESULT(CGAL_LIBS     =     $CGAL_LIBS)
400    fi
401
402    if test "x$cgal" = xyes; then
403      save_LIBS="$LIBS"
404      LIBS="$LIBS -L$CGAL_LIBDIR"
405      if test "x$CGAL_USES_LEDA" = xyes; then
406        LIBS="-lL $LIBS -L$LEDA_LIBDIR"
407      fi
408      # if test "x$CGAL_USES_GMP" = xyes; then
409      #   LIBS="-lgmp $LIBS $GMP_LIBDIR"
410      # fi
411      AC_CHECK_CXX_LIB(CGAL, ::CGAL::Cartesian<int>::Point_2, [#include <CGAL/Cartesian.h>], [::CGAL::Cartesian<int>::Point_2 P], [cgal=yes], [cgal=no], -I$CGAL_INCLDIR -I$CGAL_INCLCONFDIR)
412      LIBS="$save_LIBS"
413    fi
414
415  fi
416  AC_LANG_POP()
417
418 fi
419
420 if test "x$cgal" = xyes; then
421  USE_CGAL=yes
422  AC_DEFINE(HAVE_CGAL, 1, [Is defined if the CGAL library is available.])
423  AC_DEFINE_UNQUOTED(CGAL_VERSION, $CGAL_VERSION, [The CGAL version number.])
424 changequote({, })dnl
425  if ! echo $CGAL_VERSION | grep -q "^3.0"; then
426 changequote([, ])dnl
427    AC_MSG_WARN(*****************************************************)
428    AC_MSG_WARN(*** Warning: Your CGAL version is newer than the  ***)
429    AC_MSG_WARN(*** supported versions. It may still work though. ***)
430    AC_MSG_WARN(*****************************************************)
431  fi
432 else
433   if test "x$cgal_makefile" != xno; then
434    AC_MSG_RESULT(No CGAL support. These are not the droids you want.)
435  fi
436  CGAL_INCLDIR=
437  CGAL_LIBDIR=
438  CGAL_RLIBDIR=
439  CGAL_DEFINES=
440  CGAL_CXXFLAGS=
441  CGAL_LIBS=
442 fi
443
444 AC_SUBST(USE_CGAL)
445 CGAL_INC_DIR="${CGAL_INCLDIR} ${CGAL_INCLCONFDIR}"
446 AC_SUBST(CGAL_INC_DIR)
447 CGAL_LIB_DIR=${CGAL_LIBDIR}
448 AC_SUBST(CGAL_LIB_DIR)
449 CGAL_RLIB_DIR=${CGAL_RLIBDIR}
450 AC_SUBST(CGAL_RLIB_DIR)
451 AC_SUBST(CGAL_DEFINES)
452 AC_SUBST(CGAL_CXXFLAGS)
453 AC_SUBST(CGAL_LIBS)
454
256   BB_ENABLE_DOXYGEN
257  
258   AC_SUBST(EXEEXT)
259   AC_SUBST(OBJEXT)
260   AC_SUBST(BATEXT)
261   AC_SUBST(MKINSTALLDIRS)
262 < AC_SUBST(OOPSE)
263 < AC_SUBST(OOPSE_HOME)
262 > AC_SUBST(OPENMD)
263 > AC_SUBST(OPENMD_HOME)
264   AC_SUBST(SUBDIRS)
265   AC_SUBST(CFLAGS)
266   AC_SUBST(CXXFLAGS)
# Line 468 | Line 269 | AC_SUBST(F90_MODULE_NAMES)
269   AC_SUBST(LDFLAGS)
270   AC_SUBST(PREPDEFFLAG)
271   AC_SUBST(F90_MODULE_NAMES)
272 < AC_CONFIG_FILES([make/Makefile src/utils/Makefile src/applications/nanoRodBuilder/Makefile src/applications/utilities/affineScale src/applications/utilities/waterBoxer scripts/filepp], [chmod 0755 scripts/*])
272 > AC_CONFIG_FILES([make/Makefile src/utils/Makefile src/math/Makefile src/integrators/Makefile src/applications/atom2md/Makefile scripts/filepp], [chmod 0755 scripts/*])
273  
274   AC_OUTPUT

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