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root/OpenMD/branches/development/CMakeLists.txt
Revision: 1655
Committed: Mon Oct 3 20:32:45 2011 UTC (13 years, 9 months ago) by gezelter
Content type: text/plain
File size: 20380 byte(s)
Log Message: 
Replacing most of the C-code with C++ code, and migrating the config.h
file into the PROJECT_BINARY_DIR so that we can have multiple builds
on the same architecture.

File Contents

# Content
1 # Top level cmake script for OpenMD.
2
3 cmake_minimum_required (VERSION 2.6)
4 project(OpenMD)
5
6 # OpenMD version number.
7 set (VERSION_MAJOR "2")
8 set (VERSION_MINOR "0")
9 set (VERSION_TINY "0")
10
11 # cmake modules that are needed to build oopse
12 SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14 SET(CMAKE_INSTALL_PREFIX
15 "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16 )
17 ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18
19 # ---------- Setup output Directories -------------------------
20 SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21 ${PROJECT_BINARY_DIR}/lib
22 CACHE PATH
23 "Single directory for all shared libraries"
24 )
25 # --------- Setup the Executable output Directory -------------
26 SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27 ${PROJECT_BINARY_DIR}/bin
28 CACHE PATH
29 "Single directory for all Executables."
30 )
31 # --------- Setup the static library directory -------------
32 SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33 ${PROJECT_BINARY_DIR}/lib
34 CACHE PATH
35 "Single directory for all static libraries."
36 )
37
38
39 enable_language(CXX C)
40
41 if ( APPLE )
42 set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43 set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44 endif( APPLE )
45 FIND_PACKAGE(MPI)
46 IF ( MPI_FOUND )
47 SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48 INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49 ENDIF()
50
51 FIND_PACKAGE(Subversion)
52 IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53 Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54 MESSAGE("Current revision is ${Project_WC_REVISION}")
55 Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56 SET(SVN_REV ${Project_WC_REVISION})
57 ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58 SET(GENERATELOGS "${PROJECT_SOURCE_DIR}/doc/svn2cl")
59 ADD_CUSTOM_TARGET(ChangeLog
60 COMMAND ${GENERATELOGS} "--group-by-day" "--include-rev"
61 "--linelen=78" "--output=${PROJECT_BINARY_DIR}/ChangeLog" "${PROJECT_SOURCE_DIR}"
62 )
63 ENDIF()
64
65 # Optional libraries: If we can find these, we will build with them
66 # Look for OpenBabel libraries
67 find_package(OpenBabel2)
68 IF(OPENBABEL2_FOUND)
69 SET(USE_OPENBABEL)
70 include_directories(${OPENBABEL2_INCLUDE_DIR})
71 message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
72 # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
73 ENDIF(OPENBABEL2_FOUND)
74
75 #Look for QHULL Libraries
76 find_package(QHULL)
77 IF(QHULL_FOUND)
78 SET(HAVE_QHULL 1)
79 include_directories(${QHULL_INCLUDE_DIR})
80 LINK_LIBRARIES(${QHULL_LIBRARIES})
81 ENDIF(QHULL_FOUND)
82
83 # zlib stuff
84 find_package(ZLIB)
85 if(ZLIB_FOUND)
86 SET(HAVE_LIBZ 1)
87 add_definitions(-DHAVE_LIBZ)
88 include_directories(${ZLIB_INCLUDE_DIR})
89 LINK_LIBRARIES(${ZLIB_LIBRARIES})
90 endif(ZLIB_FOUND)
91
92 #FFTW
93 INCLUDE(${CMAKE_MODULE_PATH}/FindFFTW.cmake)
94 IF(FFTW_FOUND)
95 SET(HAVE_LIBFFTW 1)
96 SET(HAVE_FFTW3_H)
97 INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
98 LINK_LIBRARIES(${FFTW_LIBRARIES})
99 ENDIF(FFTW_FOUND)
100
101 # add a target to generate API documentation with Doxygen
102 find_package(Doxygen)
103 if(DOXYGEN_FOUND)
104 configure_file("${CMAKE_CURRENT_SOURCE_DIR}/doc/Doxyfile.in" "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile" @ONLY)
105 add_custom_target(doc
106 ${DOXYGEN_EXECUTABLE} "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile"
107 WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/doc"
108 COMMENT "Generating API documentation with Doxygen" VERBATIM
109 )
110 endif(DOXYGEN_FOUND)
111
112 #include checks
113 include(CheckIncludeFile)
114 CHECK_INCLUDE_FILE(fftw3.h HAVE_FFTW3_H)
115 CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
116 CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
117 CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
118 check_include_file(limits.h HAVE_LIMITS_H)
119 check_include_file(stdlib.h HAVE_STDLIB_H)
120 check_include_file(string.h HAVE_STRING_H)
121 check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
122 check_include_file(unistd.h HAVE_UNISTD_H)
123
124 #symbol checks
125 include(CheckSymbolExists)
126
127 #function checks
128 include(CheckFunctionExists)
129 check_function_exists(atexit HAVE_ATEXIT)
130 check_function_exists(floor HAVE_FLOOR)
131 check_function_exists(pow HAVE_POW)
132 check_function_exists(select HAVE_SELECT)
133 check_function_exists(sqrt HAVE_SQRT)
134 check_function_exists(strcasecmp HAVE_STRCASECMP)
135 check_function_exists(strchr HAVE_STRCHR)
136 check_function_exists(strdup HAVE_STRDUP)
137 check_function_exists(strncasecmp HAVE_STRNCASECMP)
138 check_function_exists(strstr HAVE_STRSTR)
139 check_function_exists(strtol HAVE_STRTOL)
140 check_function_exists(strtoull HAVE_STRTOULL)
141 check_function_exists(sysmp HAVE_SYSMP)
142 check_function_exists(table HAVE_TABLE)
143
144
145 FIND_PACKAGE(Perl)
146 IF(PERL_FOUND)
147 SET(PERL ${PERL_EXECUTABLE})
148 ELSE(PERL_FOUND)
149 MESSAGE(STATUS "Failed to find perl")
150 ENDIF(PERL_FOUND)
151
152 FIND_PACKAGE(PythonInterp)
153 IF(PYTHON_EXECUTABLE)
154 SET(PYTHON ${PYTHON_EXECUTABLE})
155 ELSE(PYTHON_EXECUTABLE)
156 MESSAGE(STATUS "Failed to find python")
157 ENDIF(PYTHON_EXECUTABLE)
158
159 SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
160
161
162 configure_file (
163 "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
164 "${PROJECT_BINARY_DIR}/config.h"
165 )
166 include_directories("${PROJECT_BINARY_DIR}" "${PROJECT_SOURCE_DIR}/src")
167
168
169 #Add executables for build
170 set (PROGRAMS
171 openmd
172 openmd_MPI
173 Dump2XYZ
174 simpleBuilder
175 StaticProps
176 DynamicProps
177 randomBuilder
178 nanoparticleBuilder
179 thermalizer
180 atom2md
181 Hydro)
182
183 set(SOURCE
184 src/antlr/ANTLRUtil.cpp
185 src/antlr/ASTFactory.cpp
186 src/antlr/ASTNULLType.cpp
187 src/antlr/ASTRefCount.cpp
188 src/antlr/BaseAST.cpp
189 src/antlr/BitSet.cpp
190 src/antlr/CharBuffer.cpp
191 src/antlr/CharScanner.cpp
192 src/antlr/CommonAST.cpp
193 src/antlr/CommonASTWithHiddenTokens.cpp
194 src/antlr/CommonHiddenStreamToken.cpp
195 src/antlr/CommonToken.cpp
196 src/antlr/InputBuffer.cpp
197 src/antlr/LLkParser.cpp
198 src/antlr/MismatchedCharException.cpp
199 src/antlr/MismatchedTokenException.cpp
200 src/antlr/NoViableAltException.cpp
201 src/antlr/NoViableAltForCharException.cpp
202 src/antlr/Parser.cpp
203 src/antlr/RecognitionException.cpp
204 src/antlr/String.cpp
205 src/antlr/Token.cpp
206 src/antlr/TokenBuffer.cpp
207 src/antlr/TokenRefCount.cpp
208 src/antlr/TokenStreamBasicFilter.cpp
209 src/antlr/TokenStreamHiddenTokenFilter.cpp
210 src/antlr/TokenStreamRewriteEngine.cpp
211 src/antlr/TokenStreamSelector.cpp
212 src/antlr/TreeParser.cpp
213 src/brains/BlockSnapshotManager.cpp
214 src/brains/DataStorage.cpp
215 src/brains/MoleculeCreator.cpp
216 src/brains/PairList.cpp
217 src/brains/Register.cpp
218 src/brains/SimSnapshotManager.cpp
219 src/brains/Snapshot.cpp
220 src/brains/Stats.cpp
221 src/constraints/Rattle.cpp
222 src/hydrodynamics/Ellipsoid.cpp
223 src/hydrodynamics/HydroProp.cpp
224 src/hydrodynamics/Sphere.cpp
225 src/integrators/DLM.cpp
226 src/integrators/Integrator.cpp
227 src/integrators/IntegratorFactory.cpp
228 src/integrators/LangevinDynamics.cpp
229 src/integrators/LDForceManager.cpp
230 src/integrators/NgammaT.cpp
231 src/integrators/NPAT.cpp
232 src/integrators/NPrT.cpp
233 src/integrators/NPT.cpp
234 src/integrators/NPTf.cpp
235 src/integrators/NPTi.cpp
236 src/integrators/NPTsz.cpp
237 src/integrators/NPTxyz.cpp
238 src/integrators/NVE.cpp
239 src/integrators/NVT.cpp
240 src/integrators/VelocityVerletIntegrator.cpp
241 src/io/AtomTypesSectionParser.cpp
242 src/io/BaseAtomTypesSectionParser.cpp
243 src/io/BendTypesSectionParser.cpp
244 src/io/BondTypesSectionParser.cpp
245 src/io/ChargeAtomTypesSectionParser.cpp
246 src/io/DirectionalAtomTypesSectionParser.cpp
247 src/io/EAMAtomTypesSectionParser.cpp
248 src/io/ForceFieldOptions.cpp
249 src/io/GayBerneAtomTypesSectionParser.cpp
250 src/io/Globals.cpp
251 src/io/gzstream.cpp
252 src/io/InversionTypesSectionParser.cpp
253 src/io/LennardJonesAtomTypesSectionParser.cpp
254 src/io/MultipoleAtomTypesSectionParser.cpp
255 src/io/NonBondedInteractionsSectionParser.cpp
256 src/io/OptionSectionParser.cpp
257 src/io/ParamConstraint.cpp
258 src/io/SCAtomTypesSectionParser.cpp
259 src/io/SectionParser.cpp
260 src/io/SectionParserManager.cpp
261 src/io/ShapeAtomTypesSectionParser.cpp
262 src/io/StickyAtomTypesSectionParser.cpp
263 src/io/StickyPowerAtomTypesSectionParser.cpp
264 src/io/TorsionTypesSectionParser.cpp
265 src/io/ZConsReader.cpp
266 src/lattice/CubicLattice.cpp
267 src/lattice/FCCLattice.cpp
268 src/lattice/Lattice.cpp
269 src/lattice/LatticeFactory.cpp
270 src/lattice/shapedLattice.cpp
271 src/math/ChebyshevT.cpp
272 src/math/ChebyshevU.cpp
273 src/math/CubicSpline.cpp
274 src/math/LegendrePolynomial.cpp
275 src/math/RealSphericalHarmonic.cpp
276 src/math/RMSD.cpp
277 src/math/SeqRandNumGen.cpp
278 src/math/SphericalHarmonic.cpp
279 src/math/Wigner3jm.cpp
280 src/mdParser/FilenameObserver.cpp
281 src/mdParser/MDLexer.cpp
282 src/mdParser/MDParser.cpp
283 src/mdParser/MDTreeParser.cpp
284 src/minimizers/MinimizerFactory.cpp
285 src/minimizers/MinimizerParameterSet.cpp
286 src/nonbonded/EAM.cpp
287 src/nonbonded/Electrostatic.cpp
288 src/nonbonded/GB.cpp
289 src/nonbonded/InteractionManager.cpp
290 src/nonbonded/LJ.cpp
291 src/nonbonded/MAW.cpp
292 src/nonbonded/Morse.cpp
293 src/nonbonded/RepulsivePower.cpp
294 src/nonbonded/SC.cpp
295 src/nonbonded/Sticky.cpp
296 src/nonbonded/SwitchingFunction.cpp
297 src/primitives/Atom.cpp
298 src/primitives/Bend.cpp
299 src/primitives/DirectionalAtom.cpp
300 src/primitives/GhostBend.cpp
301 src/primitives/GhostTorsion.cpp
302 src/primitives/Inversion.cpp
303 src/primitives/Molecule.cpp
304 src/primitives/RigidBody.cpp
305 src/primitives/StuntDouble.cpp
306 src/primitives/Torsion.cpp
307 src/primitives/UreyBradleyBend.cpp
308 src/restraints/MolecularRestraint.cpp
309 src/restraints/ObjectRestraint.cpp
310 src/selection/DistanceFinder.cpp
311 src/selection/HullFinder.cpp
312 src/selection/IndexFinder.cpp
313 src/selection/NameFinder.cpp
314 src/selection/SelectionCompiler.cpp
315 src/selection/SelectionEvaluator.cpp
316 src/selection/SelectionManager.cpp
317 src/selection/SelectionToken.cpp
318 src/selection/TokenMap.cpp
319 src/types/AtomStamp.cpp
320 src/types/AtomType.cpp
321 src/types/BendStamp.cpp
322 src/types/BondStamp.cpp
323 src/types/CharmmTorsionType.cpp
324 src/types/Component.cpp
325 src/types/CutoffGroupStamp.cpp
326 src/types/DirectionalAtomType.cpp
327 src/types/FragmentStamp.cpp
328 src/types/ImproperCosineInversionType.cpp
329 src/types/InversionStamp.cpp
330 src/types/MoleculeStamp.cpp
331 src/types/NonBondedInteractionType.cpp
332 src/types/RestraintStamp.cpp
333 src/types/RigidBodyStamp.cpp
334 src/types/ShapeAtomType.cpp
335 src/types/TorsionStamp.cpp
336 src/types/ZconsStamp.cpp
337 src/UseTheForce/Amber_FF.cpp
338 src/UseTheForce/CLAYFF.cpp
339 src/UseTheForce/DUFF.cpp
340 src/UseTheForce/EADM_FF.cpp
341 src/UseTheForce/EAM_FF.cpp
342 src/UseTheForce/ForceField.cpp
343 src/UseTheForce/ForceFieldFactory.cpp
344 src/UseTheForce/MnM_FF.cpp
345 src/UseTheForce/SC_FF.cpp
346 src/UseTheForce/SHAPES_FF.cpp
347 src/utils/ElementsTable.cpp
348 src/utils/MoLocator.cpp
349 src/utils/OpenMDBitSet.cpp
350 src/utils/PropertyMap.cpp
351 src/utils/StringTokenizer.cpp
352 src/utils/StringUtils.cpp
353 src/utils/Trim.cpp
354 src/utils/Utility.cpp
355 src/utils/wildcards.cpp
356 src/visitors/AtomNameVisitor.cpp
357 src/visitors/AtomVisitor.cpp
358 src/visitors/CompositeVisitor.cpp
359 src/visitors/LipidTransVisitor.cpp
360 src/visitors/OtherVisitor.cpp
361 src/visitors/ReplacementVisitor.cpp
362 src/visitors/RigidBodyVisitor.cpp
363 src/visitors/ZconsVisitor.cpp
364 )
365
366 set( PARALLEL_SOURCE
367 src/brains/ForceManager.cpp
368 src/brains/SimCreator.cpp
369 src/brains/SimInfo.cpp
370 src/brains/Thermo.cpp
371 src/constraints/ZconstraintForceManager.cpp
372 src/integrators/RNEMD.cpp
373 src/integrators/Velocitizer.cpp
374 src/io/DumpReader.cpp
375 src/io/DumpWriter.cpp
376 src/io/RestReader.cpp
377 src/io/RestWriter.cpp
378 src/io/StatWriter.cpp
379 src/io/ZConsWriter.cpp
380 src/io/ifstrstream.cpp
381 src/math/ParallelRandNumGen.cpp
382 src/minimizers/CGFamilyMinimizer.cpp
383 src/minimizers/Minimizer.cpp
384 src/minimizers/PRCG.cpp
385 src/minimizers/SDMinimizer.cpp
386 src/parallel/ForceDecomposition.cpp
387 src/parallel/ForceMatrixDecomposition.cpp
388 src/restraints/RestraintForceManager.cpp
389 src/restraints/ThermoIntegrationForceManager.cpp
390 src/utils/ProgressBar.cpp
391 src/utils/simError.c
392 )
393
394 IF(QHULL_FOUND)
395 set(QHULL_SOURCE
396 src/integrators/LangevinHullDynamics.cpp
397 src/math/Triangle.cpp
398 )
399 set(QHULL_PARALLEL_SOURCE
400 src/integrators/LangevinHullForceManager.cpp
401 src/math/ConvexHull.cpp
402 src/math/AlphaHull.cpp
403 )
404 ENDIF(QHULL_FOUND)
405
406 add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
407 add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
408
409 IF(MPI_FOUND)
410 add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
411 set_target_properties(openmd_parallel PROPERTIES
412 COMPILE_DEFINITIONS IS_MPI
413 )
414 ENDIF(MPI_FOUND)
415
416 add_executable(openmd src/applications/openmd/openmd.cpp)
417 target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
418
419 if (MPI_FOUND)
420 add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
421 set_target_properties(openmd_MPI PROPERTIES
422 COMPILE_DEFINITIONS IS_MPI
423 )
424 target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
425 INSTALL(TARGETS
426 openmd_parallel openmd_MPI
427 RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
428 LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
429 ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
430 )
431 ENDIF (MPI_FOUND)
432
433 set (DUMP2XYZSOURCE
434 src/applications/dump2Xyz/Dump2XYZ.cpp
435 src/applications/dump2Xyz/Dump2XYZCmd.cpp
436 )
437
438 set (DYNAMICPROPSSOURCE
439 src/applications/dynamicProps/ActionCorrFunc.cpp
440 src/applications/dynamicProps/CrossTimeCorrFunc.cpp
441 src/applications/dynamicProps/DipoleCorrFunc.cpp
442 src/applications/dynamicProps/DirectionalRCorrFunc.cpp
443 src/applications/dynamicProps/DynamicProps.cpp
444 src/applications/dynamicProps/EnergyCorrFunc.cpp
445 src/applications/dynamicProps/FrameTimeCorrFunc.cpp
446 src/applications/dynamicProps/LegendreCorrFunc.cpp
447 src/applications/dynamicProps/MomentumCorrFunc.cpp
448 src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
449 src/applications/dynamicProps/RadialRCorrFunc.cpp
450 src/applications/dynamicProps/RCorrFunc.cpp
451 src/applications/dynamicProps/StressCorrFunc.cpp
452 src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
453 src/applications/dynamicProps/ThetaCorrFunc.cpp
454 src/applications/dynamicProps/TimeCorrFunc.cpp
455 src/applications/dynamicProps/VCorrFunc.cpp
456 src/applications/dynamicProps/DynamicPropsCmd.cpp
457 )
458
459 set (HYDROSOURCE
460 src/applications/hydrodynamics/AnalyticalModel.cpp
461 src/applications/hydrodynamics/ApproximationModel.cpp
462 src/applications/hydrodynamics/BeadModel.cpp
463 src/applications/hydrodynamics/CompositeShape.cpp
464 src/applications/hydrodynamics/Hydro.cpp
465 src/applications/hydrodynamics/HydrodynamicsModel.cpp
466 src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
467 src/applications/hydrodynamics/RoughShell.cpp
468 src/applications/hydrodynamics/ShapeBuilder.cpp
469 src/applications/hydrodynamics/HydroCmd.cpp
470 )
471
472 set (STATICPROPSSOURCE
473 src/applications/staticProps/AngleR.cpp
474 src/applications/staticProps/BondAngleDistribution.cpp
475 src/applications/staticProps/BondOrderParameter.cpp
476 src/applications/staticProps/BOPofR.cpp
477 src/applications/staticProps/DensityPlot.cpp
478 src/applications/staticProps/GofAngle2.cpp
479 src/applications/staticProps/GofR.cpp
480 src/applications/staticProps/GofRAngle.cpp
481 src/applications/staticProps/GofRZ.cpp
482 src/applications/staticProps/GofXyz.cpp
483 src/applications/staticProps/GofZ.cpp
484 src/applications/staticProps/Hxy.cpp
485 src/applications/staticProps/NanoLength.cpp
486 src/applications/staticProps/NanoVolume.cpp
487 src/applications/staticProps/ObjectCount.cpp
488 src/applications/staticProps/P2OrderParameter.cpp
489 src/applications/staticProps/pAngle.cpp
490 src/applications/staticProps/RadialDistrFunc.cpp
491 src/applications/staticProps/RhoR.cpp
492 src/applications/staticProps/RhoZ.cpp
493 src/applications/staticProps/RippleOP.cpp
494 src/applications/staticProps/SCDOrderParameter.cpp
495 src/applications/staticProps/StaticProps.cpp
496 src/applications/staticProps/TetrahedralityParam.cpp
497 src/applications/staticProps/TwoDGofR.cpp
498 src/applications/staticProps/StaticPropsCmd.cpp
499 )
500
501 set (NANOPARTICLEBUILDERSOURCE
502 src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
503 src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
504 src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.cpp
505 )
506
507 set (RANDOMBUILDERSOURCE
508 src/applications/randomBuilder/randomBuilder.cpp
509 src/applications/randomBuilder/randomBuilderCmd.cpp
510 )
511
512 set(SIMPLEBUILDERSOURCE
513 src/applications/simpleBuilder/simpleBuilder.cpp
514 src/applications/simpleBuilder/simpleBuilderCmd.cpp
515 )
516
517 set(THERMALIZERSOURCE
518 src/applications/thermalizer/thermalizer.cpp
519 src/applications/thermalizer/thermalizerCmd.cpp
520 )
521
522 add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
523 target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
524 add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
525 target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
526 add_executable(Hydro ${HYDROSOURCE})
527 target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
528 add_executable(StaticProps ${STATICPROPSSOURCE})
529 target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
530 add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
531 target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
532 add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
533 target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
534 add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
535 target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
536 add_executable(thermalizer ${THERMALIZERSOURCE})
537 target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
538
539 if (OPENBABEL2_FOUND)
540 set (ATOM2MDSOURCE
541 src/applications/atom2md/atom2md.cpp
542 src/applications/atom2md/openmdformat.cpp
543 )
544 add_executable(atom2md ${ATOM2MDSOURCE})
545 target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
546 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
547 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
548 ENDIF (OPENBABEL2_FOUND)
549
550
551 set(PY_FILES
552 src/applications/hydrodynamics/diffExplainer
553 src/applications/utilities/affineScale
554 src/applications/utilities/dumpConverter
555 src/applications/utilities/md-solvator
556 src/applications/utilities/md2md
557 src/applications/utilities/mdSplit
558 src/applications/utilities/principalAxisCalculator
559 src/applications/utilities/stat2visco
560 src/applications/utilities/waterRotator
561 )
562
563 IF(PYTHON_EXECUTABLE)
564 foreach(PY_FILE ${PY_FILES})
565 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
566 CONFIGURE_FILE(${PY_FILE}
567 "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
568 INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
569 DESTINATION bin
570 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
571 endforeach(PY_FILE)
572 ENDIF(PYTHON_EXECUTABLE)
573
574 set(PERL_FILES
575 src/applications/utilities/solvator
576 src/applications/utilities/waterBoxer
577 )
578
579 IF(PERL_FOUND)
580 foreach(PERL_FILE ${PERL_FILES})
581 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
582 configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
583 INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
584 DESTINATION bin
585 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
586
587 endforeach(PERL_FILE)
588 ENDIF(PERL_FOUND)
589
590 INSTALL(FILES AUTHORS LICENSE README INSTALL DESTINATION .
591 PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
592 INSTALL(TARGETS
593 openmd_core
594 openmd_single
595 openmd
596 Dump2XYZ
597 simpleBuilder
598 StaticProps
599 DynamicProps
600 randomBuilder
601 nanoparticleBuilder
602 thermalizer
603 Hydro
604 RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
605 LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
606 ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
607 )
608
609 install(DIRECTORY forceFields/
610 DESTINATION forceFields
611 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
612 PATTERN ".svn" EXCLUDE
613 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
614 install(DIRECTORY samples/
615 DESTINATION samples
616 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
617 PATTERN ".svn" EXCLUDE
618 PATTERN "*.dump" EXCLUDE
619 PATTERN "*.stat" EXCLUDE
620 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
621 INSTALL(FILES "${CMAKE_CURRENT_SOURCE_DIR}/doc/OpenMDmanual.pdf"
622 DESTINATION doc
623 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)