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root/OpenMD/branches/development/CMakeLists.txt
Revision: 1651
Committed: Tue Sep 27 14:48:28 2011 UTC (13 years, 9 months ago) by gezelter
Content type: text/plain
File size: 20195 byte(s)
Log Message: 
Added "doc" build target.

File Contents

# Content
1 # Top level cmake script for OpenMD.
2
3 cmake_minimum_required (VERSION 2.6)
4 project(OpenMD)
5
6 # OpenMD version number.
7 set (VERSION_MAJOR "2")
8 set (VERSION_MINOR "0")
9 set (VERSION_TINY "0")
10
11 # cmake modules that are needed to build oopse
12 SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14 SET(CMAKE_INSTALL_PREFIX
15 "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16 )
17 ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18
19 # ---------- Setup output Directories -------------------------
20 SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21 ${PROJECT_BINARY_DIR}/lib
22 CACHE PATH
23 "Single directory for all shared libraries"
24 )
25 # --------- Setup the Executable output Directory -------------
26 SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27 ${PROJECT_BINARY_DIR}/bin
28 CACHE PATH
29 "Single directory for all Executables."
30 )
31 # --------- Setup the static library directory -------------
32 SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33 ${PROJECT_BINARY_DIR}/lib
34 CACHE PATH
35 "Single directory for all static libraries."
36 )
37
38
39 enable_language(CXX C)
40
41 if ( APPLE )
42 set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43 set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44 endif( APPLE )
45 FIND_PACKAGE(MPI)
46 IF ( MPI_FOUND )
47 SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48 INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49 ENDIF()
50
51 FIND_PACKAGE(Subversion)
52 IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53 Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54 MESSAGE("Current revision is ${Project_WC_REVISION}")
55 Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56 SET(SVN_REV ${Project_WC_REVISION})
57 ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58 ENDIF()
59
60 # Optional libraries: If we can find these, we will build with them
61 # Look for OpenBabel libraries
62 find_package(OpenBabel2)
63 IF(OPENBABEL2_FOUND)
64 SET(USE_OPENBABEL)
65 include_directories(${OPENBABEL2_INCLUDE_DIR})
66 message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
67 # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
68 ENDIF(OPENBABEL2_FOUND)
69
70 #Look for QHULL Libraries
71 find_package(QHULL)
72 IF(QHULL_FOUND)
73 SET(HAVE_QHULL 1)
74 include_directories(${QHULL_INCLUDE_DIR})
75 LINK_LIBRARIES(${QHULL_LIBRARIES})
76 ENDIF(QHULL_FOUND)
77
78 # zlib stuff
79 find_package(ZLIB)
80 if(ZLIB_FOUND)
81 SET(HAVE_LIBZ 1)
82 add_definitions(-DHAVE_LIBZ)
83 include_directories(${ZLIB_INCLUDE_DIR})
84 LINK_LIBRARIES(${ZLIB_LIBRARIES})
85 endif(ZLIB_FOUND)
86
87 #FFTW
88 INCLUDE(${CMAKE_MODULE_PATH}/FindFFTW.cmake)
89 IF(FFTW_FOUND)
90 SET(HAVE_LIBFFTW 1)
91 SET(HAVE_FFTW3_H)
92 INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
93 LINK_LIBRARIES(${FFTW_LIBRARIES})
94 ENDIF(FFTW_FOUND)
95
96 # add a target to generate API documentation with Doxygen
97 find_package(Doxygen)
98 if(DOXYGEN_FOUND)
99 configure_file("${CMAKE_CURRENT_SOURCE_DIR}/doc/Doxyfile.in" "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile" @ONLY)
100 add_custom_target(doc
101 ${DOXYGEN_EXECUTABLE} "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile"
102 WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/doc"
103 COMMENT "Generating API documentation with Doxygen" VERBATIM
104 )
105 endif(DOXYGEN_FOUND)
106
107 #include checks
108 include(CheckIncludeFile)
109 CHECK_INCLUDE_FILE(fftw3.h HAVE_FFTW3_H)
110 CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
111 CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
112 CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
113 check_include_file(limits.h HAVE_LIMITS_H)
114 check_include_file(stdlib.h HAVE_STDLIB_H)
115 check_include_file(string.h HAVE_STRING_H)
116 check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
117 check_include_file(unistd.h HAVE_UNISTD_H)
118
119 #symbol checks
120 include(CheckSymbolExists)
121
122 #function checks
123 include(CheckFunctionExists)
124 check_function_exists(atexit HAVE_ATEXIT)
125 check_function_exists(floor HAVE_FLOOR)
126 check_function_exists(pow HAVE_POW)
127 check_function_exists(select HAVE_SELECT)
128 check_function_exists(sqrt HAVE_SQRT)
129 check_function_exists(strcasecmp HAVE_STRCASECMP)
130 check_function_exists(strchr HAVE_STRCHR)
131 check_function_exists(strdup HAVE_STRDUP)
132 check_function_exists(strncasecmp HAVE_STRNCASECMP)
133 check_function_exists(strstr HAVE_STRSTR)
134 check_function_exists(strtol HAVE_STRTOL)
135 check_function_exists(strtoull HAVE_STRTOULL)
136 check_function_exists(sysmp HAVE_SYSMP)
137 check_function_exists(table HAVE_TABLE)
138
139
140 FIND_PACKAGE(Perl)
141 IF(PERL_FOUND)
142 SET(PERL ${PERL_EXECUTABLE})
143 ELSE(PERL_FOUND)
144 MESSAGE(STATUS "Failed to find perl")
145 ENDIF(PERL_FOUND)
146
147 FIND_PACKAGE(PythonInterp)
148 IF(PYTHON_EXECUTABLE)
149 SET(PYTHON ${PYTHON_EXECUTABLE})
150 ELSE(PYTHON_EXECUTABLE)
151 MESSAGE(STATUS "Failed to find python")
152 ENDIF(PYTHON_EXECUTABLE)
153
154 SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
155
156
157 configure_file (
158 "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
159 "${PROJECT_SOURCE_DIR}/src/config.h"
160 )
161 include_directories (${PROJECT_SOURCE_DIR}/src)
162
163 #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h)
164
165
166 #Add executables for build
167 set (PROGRAMS
168 openmd
169 openmd_MPI
170 Dump2XYZ
171 simpleBuilder
172 StaticProps
173 DynamicProps
174 randomBuilder
175 nanoparticleBuilder
176 thermalizer
177 atom2md
178 Hydro)
179
180 set(SOURCE
181 src/antlr/ANTLRUtil.cpp
182 src/antlr/ASTFactory.cpp
183 src/antlr/ASTNULLType.cpp
184 src/antlr/ASTRefCount.cpp
185 src/antlr/BaseAST.cpp
186 src/antlr/BitSet.cpp
187 src/antlr/CharBuffer.cpp
188 src/antlr/CharScanner.cpp
189 src/antlr/CommonAST.cpp
190 src/antlr/CommonASTWithHiddenTokens.cpp
191 src/antlr/CommonHiddenStreamToken.cpp
192 src/antlr/CommonToken.cpp
193 src/antlr/InputBuffer.cpp
194 src/antlr/LLkParser.cpp
195 src/antlr/MismatchedCharException.cpp
196 src/antlr/MismatchedTokenException.cpp
197 src/antlr/NoViableAltException.cpp
198 src/antlr/NoViableAltForCharException.cpp
199 src/antlr/Parser.cpp
200 src/antlr/RecognitionException.cpp
201 src/antlr/String.cpp
202 src/antlr/Token.cpp
203 src/antlr/TokenBuffer.cpp
204 src/antlr/TokenRefCount.cpp
205 src/antlr/TokenStreamBasicFilter.cpp
206 src/antlr/TokenStreamHiddenTokenFilter.cpp
207 src/antlr/TokenStreamRewriteEngine.cpp
208 src/antlr/TokenStreamSelector.cpp
209 src/antlr/TreeParser.cpp
210 src/brains/BlockSnapshotManager.cpp
211 src/brains/DataStorage.cpp
212 src/brains/MoleculeCreator.cpp
213 src/brains/PairList.cpp
214 src/brains/Register.cpp
215 src/brains/SimSnapshotManager.cpp
216 src/brains/Snapshot.cpp
217 src/brains/Stats.cpp
218 src/constraints/Rattle.cpp
219 src/hydrodynamics/Ellipsoid.cpp
220 src/hydrodynamics/HydroProp.cpp
221 src/hydrodynamics/Sphere.cpp
222 src/integrators/DLM.cpp
223 src/integrators/Integrator.cpp
224 src/integrators/IntegratorFactory.cpp
225 src/integrators/LangevinDynamics.cpp
226 src/integrators/LDForceManager.cpp
227 src/integrators/NgammaT.cpp
228 src/integrators/NPAT.cpp
229 src/integrators/NPrT.cpp
230 src/integrators/NPT.cpp
231 src/integrators/NPTf.cpp
232 src/integrators/NPTi.cpp
233 src/integrators/NPTsz.cpp
234 src/integrators/NPTxyz.cpp
235 src/integrators/NVE.cpp
236 src/integrators/NVT.cpp
237 src/integrators/VelocityVerletIntegrator.cpp
238 src/io/AtomTypesSectionParser.cpp
239 src/io/BaseAtomTypesSectionParser.cpp
240 src/io/BendTypesSectionParser.cpp
241 src/io/BondTypesSectionParser.cpp
242 src/io/ChargeAtomTypesSectionParser.cpp
243 src/io/DirectionalAtomTypesSectionParser.cpp
244 src/io/EAMAtomTypesSectionParser.cpp
245 src/io/ForceFieldOptions.cpp
246 src/io/GayBerneAtomTypesSectionParser.cpp
247 src/io/Globals.cpp
248 src/io/gzstream.cpp
249 src/io/InversionTypesSectionParser.cpp
250 src/io/LennardJonesAtomTypesSectionParser.cpp
251 src/io/MultipoleAtomTypesSectionParser.cpp
252 src/io/NonBondedInteractionsSectionParser.cpp
253 src/io/OptionSectionParser.cpp
254 src/io/ParamConstraint.cpp
255 src/io/SCAtomTypesSectionParser.cpp
256 src/io/SectionParser.cpp
257 src/io/SectionParserManager.cpp
258 src/io/ShapeAtomTypesSectionParser.cpp
259 src/io/StickyAtomTypesSectionParser.cpp
260 src/io/StickyPowerAtomTypesSectionParser.cpp
261 src/io/TorsionTypesSectionParser.cpp
262 src/io/ZConsReader.cpp
263 src/lattice/CubicLattice.cpp
264 src/lattice/FCCLattice.cpp
265 src/lattice/Lattice.cpp
266 src/lattice/LatticeFactory.cpp
267 src/lattice/shapedLattice.cpp
268 src/math/ChebyshevT.cpp
269 src/math/ChebyshevU.cpp
270 src/math/CubicSpline.cpp
271 src/math/LegendrePolynomial.cpp
272 src/math/RealSphericalHarmonic.cpp
273 src/math/RMSD.cpp
274 src/math/SeqRandNumGen.cpp
275 src/math/SphericalHarmonic.cpp
276 src/math/Wigner3jm.cpp
277 src/mdParser/FilenameObserver.cpp
278 src/mdParser/MDLexer.cpp
279 src/mdParser/MDParser.cpp
280 src/mdParser/MDTreeParser.cpp
281 src/minimizers/MinimizerFactory.cpp
282 src/minimizers/MinimizerParameterSet.cpp
283 src/nonbonded/EAM.cpp
284 src/nonbonded/Electrostatic.cpp
285 src/nonbonded/GB.cpp
286 src/nonbonded/InteractionManager.cpp
287 src/nonbonded/LJ.cpp
288 src/nonbonded/MAW.cpp
289 src/nonbonded/Morse.cpp
290 src/nonbonded/RepulsivePower.cpp
291 src/nonbonded/SC.cpp
292 src/nonbonded/Sticky.cpp
293 src/nonbonded/SwitchingFunction.cpp
294 src/primitives/Atom.cpp
295 src/primitives/Bend.cpp
296 src/primitives/DirectionalAtom.cpp
297 src/primitives/GhostBend.cpp
298 src/primitives/GhostTorsion.cpp
299 src/primitives/Inversion.cpp
300 src/primitives/Molecule.cpp
301 src/primitives/RigidBody.cpp
302 src/primitives/StuntDouble.cpp
303 src/primitives/Torsion.cpp
304 src/primitives/UreyBradleyBend.cpp
305 src/restraints/MolecularRestraint.cpp
306 src/restraints/ObjectRestraint.cpp
307 src/selection/DistanceFinder.cpp
308 src/selection/HullFinder.cpp
309 src/selection/IndexFinder.cpp
310 src/selection/NameFinder.cpp
311 src/selection/SelectionCompiler.cpp
312 src/selection/SelectionEvaluator.cpp
313 src/selection/SelectionManager.cpp
314 src/selection/SelectionToken.cpp
315 src/selection/TokenMap.cpp
316 src/types/AtomStamp.cpp
317 src/types/AtomType.cpp
318 src/types/BendStamp.cpp
319 src/types/BondStamp.cpp
320 src/types/CharmmTorsionType.cpp
321 src/types/Component.cpp
322 src/types/CutoffGroupStamp.cpp
323 src/types/DirectionalAtomType.cpp
324 src/types/FragmentStamp.cpp
325 src/types/ImproperCosineInversionType.cpp
326 src/types/InversionStamp.cpp
327 src/types/MoleculeStamp.cpp
328 src/types/NonBondedInteractionType.cpp
329 src/types/RestraintStamp.cpp
330 src/types/RigidBodyStamp.cpp
331 src/types/ShapeAtomType.cpp
332 src/types/TorsionStamp.cpp
333 src/types/ZconsStamp.cpp
334 src/UseTheForce/Amber_FF.cpp
335 src/UseTheForce/CLAYFF.cpp
336 src/UseTheForce/DUFF.cpp
337 src/UseTheForce/EADM_FF.cpp
338 src/UseTheForce/EAM_FF.cpp
339 src/UseTheForce/ForceField.cpp
340 src/UseTheForce/ForceFieldFactory.cpp
341 src/UseTheForce/MnM_FF.cpp
342 src/UseTheForce/SC_FF.cpp
343 src/UseTheForce/SHAPES_FF.cpp
344 src/utils/ElementsTable.cpp
345 src/utils/MoLocator.cpp
346 src/utils/OpenMDBitSet.cpp
347 src/utils/PropertyMap.cpp
348 src/utils/StringTokenizer.cpp
349 src/utils/StringUtils.cpp
350 src/utils/Trim.cpp
351 src/utils/Utility.cpp
352 src/utils/wildcards.cpp
353 src/visitors/AtomNameVisitor.cpp
354 src/visitors/AtomVisitor.cpp
355 src/visitors/CompositeVisitor.cpp
356 src/visitors/LipidTransVisitor.cpp
357 src/visitors/OtherVisitor.cpp
358 src/visitors/ReplacementVisitor.cpp
359 src/visitors/RigidBodyVisitor.cpp
360 src/visitors/ZconsVisitor.cpp
361 )
362
363 set( PARALLEL_SOURCE
364 src/brains/ForceManager.cpp
365 src/brains/SimCreator.cpp
366 src/brains/SimInfo.cpp
367 src/brains/Thermo.cpp
368 src/constraints/ZconstraintForceManager.cpp
369 src/integrators/RNEMD.cpp
370 src/integrators/Velocitizer.cpp
371 src/io/DumpReader.cpp
372 src/io/DumpWriter.cpp
373 src/io/RestReader.cpp
374 src/io/RestWriter.cpp
375 src/io/StatWriter.cpp
376 src/io/ZConsWriter.cpp
377 src/io/ifstrstream.cpp
378 src/math/ParallelRandNumGen.cpp
379 src/minimizers/CGFamilyMinimizer.cpp
380 src/minimizers/Minimizer.cpp
381 src/minimizers/PRCG.cpp
382 src/minimizers/SDMinimizer.cpp
383 src/parallel/ForceDecomposition.cpp
384 src/parallel/ForceMatrixDecomposition.cpp
385 src/restraints/RestraintForceManager.cpp
386 src/restraints/ThermoIntegrationForceManager.cpp
387 src/utils/ProgressBar.cpp
388 src/utils/simError.c
389 )
390
391 IF(QHULL_FOUND)
392 set(QHULL_SOURCE
393 src/integrators/LangevinHullDynamics.cpp
394 src/math/Triangle.cpp
395 )
396 set(QHULL_PARALLEL_SOURCE
397 src/integrators/LangevinHullForceManager.cpp
398 src/math/ConvexHull.cpp
399 src/math/AlphaHull.cpp
400 )
401 ENDIF(QHULL_FOUND)
402
403 add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
404 add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
405
406 IF(MPI_FOUND)
407 add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
408 set_target_properties(openmd_parallel PROPERTIES
409 COMPILE_DEFINITIONS IS_MPI
410 )
411 ENDIF(MPI_FOUND)
412
413 add_executable(openmd src/applications/openmd/openmd.cpp)
414 target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
415
416 if (MPI_FOUND)
417 add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
418 set_target_properties(openmd_MPI PROPERTIES
419 COMPILE_DEFINITIONS IS_MPI
420 )
421 target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
422 INSTALL(TARGETS
423 openmd_parallel openmd_MPI
424 RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
425 LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
426 ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
427 )
428 ENDIF (MPI_FOUND)
429
430 set (DUMP2XYZSOURCE
431 src/applications/dump2Xyz/Dump2XYZ.cpp
432 src/applications/dump2Xyz/Dump2XYZCmd.c
433 )
434
435 set (DYNAMICPROPSSOURCE
436 src/applications/dynamicProps/ActionCorrFunc.cpp
437 src/applications/dynamicProps/CrossTimeCorrFunc.cpp
438 src/applications/dynamicProps/DipoleCorrFunc.cpp
439 src/applications/dynamicProps/DirectionalRCorrFunc.cpp
440 src/applications/dynamicProps/DynamicProps.cpp
441 src/applications/dynamicProps/EnergyCorrFunc.cpp
442 src/applications/dynamicProps/FrameTimeCorrFunc.cpp
443 src/applications/dynamicProps/LegendreCorrFunc.cpp
444 src/applications/dynamicProps/MomentumCorrFunc.cpp
445 src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
446 src/applications/dynamicProps/RadialRCorrFunc.cpp
447 src/applications/dynamicProps/RCorrFunc.cpp
448 src/applications/dynamicProps/StressCorrFunc.cpp
449 src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
450 src/applications/dynamicProps/ThetaCorrFunc.cpp
451 src/applications/dynamicProps/TimeCorrFunc.cpp
452 src/applications/dynamicProps/VCorrFunc.cpp
453 src/applications/dynamicProps/DynamicPropsCmd.c
454 )
455
456 set (HYDROSOURCE
457 src/applications/hydrodynamics/AnalyticalModel.cpp
458 src/applications/hydrodynamics/ApproximationModel.cpp
459 src/applications/hydrodynamics/BeadModel.cpp
460 src/applications/hydrodynamics/CompositeShape.cpp
461 src/applications/hydrodynamics/Hydro.cpp
462 src/applications/hydrodynamics/HydrodynamicsModel.cpp
463 src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
464 src/applications/hydrodynamics/RoughShell.cpp
465 src/applications/hydrodynamics/ShapeBuilder.cpp
466 src/applications/hydrodynamics/HydroCmd.c
467 )
468
469 set (STATICPROPSSOURCE
470 src/applications/staticProps/AngleR.cpp
471 src/applications/staticProps/BondAngleDistribution.cpp
472 src/applications/staticProps/BondOrderParameter.cpp
473 src/applications/staticProps/BOPofR.cpp
474 src/applications/staticProps/DensityPlot.cpp
475 src/applications/staticProps/GofAngle2.cpp
476 src/applications/staticProps/GofR.cpp
477 src/applications/staticProps/GofRAngle.cpp
478 src/applications/staticProps/GofRZ.cpp
479 src/applications/staticProps/GofXyz.cpp
480 src/applications/staticProps/GofZ.cpp
481 src/applications/staticProps/Hxy.cpp
482 src/applications/staticProps/NanoLength.cpp
483 src/applications/staticProps/NanoVolume.cpp
484 src/applications/staticProps/ObjectCount.cpp
485 src/applications/staticProps/P2OrderParameter.cpp
486 src/applications/staticProps/pAngle.cpp
487 src/applications/staticProps/RadialDistrFunc.cpp
488 src/applications/staticProps/RhoR.cpp
489 src/applications/staticProps/RhoZ.cpp
490 src/applications/staticProps/RippleOP.cpp
491 src/applications/staticProps/SCDOrderParameter.cpp
492 src/applications/staticProps/StaticProps.cpp
493 src/applications/staticProps/TetrahedralityParam.cpp
494 src/applications/staticProps/TwoDGofR.cpp
495 src/applications/staticProps/StaticPropsCmd.c
496 )
497
498 set (NANOPARTICLEBUILDERSOURCE
499 src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
500 src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
501 src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.c
502 )
503
504 set (RANDOMBUILDERSOURCE
505 src/applications/randomBuilder/randomBuilder.cpp
506 src/applications/randomBuilder/randomBuilderCmd.c
507 )
508
509 set(SIMPLEBUILDERSOURCE
510 src/applications/simpleBuilder/simpleBuilder.cpp
511 src/applications/simpleBuilder/simpleBuilderCmd.c
512 )
513
514 set(THERMALIZERSOURCE
515 src/applications/thermalizer/thermalizer.cpp
516 src/applications/thermalizer/thermalizerCmd.c
517 )
518
519 add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
520 target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
521 add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
522 target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
523 add_executable(Hydro ${HYDROSOURCE})
524 target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
525 add_executable(StaticProps ${STATICPROPSSOURCE})
526 target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
527 add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
528 target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
529 add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
530 target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
531 add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
532 target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
533 add_executable(thermalizer ${THERMALIZERSOURCE})
534 target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
535
536 if (OPENBABEL2_FOUND)
537 set (ATOM2MDSOURCE
538 src/applications/atom2md/atom2md.cpp
539 src/applications/atom2md/openmdformat.cpp
540 )
541 add_executable(atom2md ${ATOM2MDSOURCE})
542 target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
543 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
544 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
545 ENDIF (OPENBABEL2_FOUND)
546
547
548 set(PY_FILES
549 src/applications/hydrodynamics/diffExplainer
550 src/applications/utilities/affineScale
551 src/applications/utilities/dumpConverter
552 src/applications/utilities/md-solvator
553 src/applications/utilities/md2md
554 src/applications/utilities/mdSplit
555 src/applications/utilities/principalAxisCalculator
556 src/applications/utilities/stat2visco
557 src/applications/utilities/waterRotator
558 )
559
560 IF(PYTHON_EXECUTABLE)
561 foreach(PY_FILE ${PY_FILES})
562 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
563 CONFIGURE_FILE(${PY_FILE}
564 "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
565 INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
566 DESTINATION bin
567 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
568 endforeach(PY_FILE)
569 ENDIF(PYTHON_EXECUTABLE)
570
571 set(PERL_FILES
572 src/applications/utilities/solvator
573 src/applications/utilities/waterBoxer
574 )
575
576 IF(PERL_FOUND)
577 foreach(PERL_FILE ${PERL_FILES})
578 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
579 configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
580 INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
581 DESTINATION bin
582 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
583
584 endforeach(PERL_FILE)
585 ENDIF(PERL_FOUND)
586
587 INSTALL(FILES AUTHORS LICENSE README DESTINATION .
588 PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
589 INSTALL(TARGETS
590 openmd_core
591 openmd_single
592 openmd
593 Dump2XYZ
594 simpleBuilder
595 StaticProps
596 DynamicProps
597 randomBuilder
598 nanoparticleBuilder
599 thermalizer
600 Hydro
601 RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
602 LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
603 ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
604 )
605
606 install(DIRECTORY forceFields/
607 DESTINATION forceFields
608 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
609 PATTERN ".svn" EXCLUDE
610 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
611 install(DIRECTORY samples/
612 DESTINATION samples
613 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
614 PATTERN ".svn" EXCLUDE
615 PATTERN "*.dump" EXCLUDE
616 PATTERN "*.stat" EXCLUDE
617 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
618 INSTALL(FILES "${CMAKE_CURRENT_SOURCE_DIR}/doc/OpenMDmanual.pdf"
619 DESTINATION doc
620 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)