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root/OpenMD/branches/development/CMakeLists.txt
Revision: 1668
Committed: Fri Jan 6 19:03:05 2012 UTC (13 years, 6 months ago) by gezelter
Content type: text/plain
File size: 19692 byte(s)
Log Message: 
Some fixes for CMake and single precision builds

File Contents

# Content
1 # Top level cmake script for OpenMD.
2 project(OpenMD)
3 # project(OpenMD CXX)
4
5 CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
6
7 SET(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake/modules")
8
9 if (NOT CMAKE_BUILD_TYPE)
10 set(CMAKE_BUILD_TYPE "Release")
11 endif()
12
13 include(CheckCXXCompilerFlag)
14
15 # OpenMD version number.
16 set (VERSION_MAJOR "2")
17 set (VERSION_MINOR "0")
18 set (VERSION_TINY "0")
19
20 # Should
21 option(SINGLE_PRECISION "Build Single precision (float) version" OFF)
22
23
24 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
25 SET(CMAKE_INSTALL_PREFIX
26 "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
27 )
28 ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
29
30 # ---------- Setup output Directories -------------------------
31 SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
32 ${PROJECT_BINARY_DIR}/lib
33 CACHE PATH
34 "Single directory for all shared libraries"
35 )
36 # --------- Setup the Executable output Directory -------------
37 SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
38 ${PROJECT_BINARY_DIR}/bin
39 CACHE PATH
40 "Single directory for all Executables."
41 )
42 # --------- Setup the static library directory -------------
43 SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
44 ${PROJECT_BINARY_DIR}/lib
45 CACHE PATH
46 "Single directory for all static libraries."
47 )
48
49 if ( APPLE )
50 set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
51 set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
52 endif( APPLE )
53 FIND_PACKAGE(MPI)
54 IF ( MPI_FOUND )
55 SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
56 INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
57 ENDIF()
58
59 FIND_PACKAGE(Subversion)
60 IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
61 Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
62 MESSAGE("Current revision is ${Project_WC_REVISION}")
63 Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
64 SET(SVN_REV ${Project_WC_REVISION})
65 ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
66 SET(GENERATELOGS "${PROJECT_SOURCE_DIR}/doc/svn2cl")
67 ADD_CUSTOM_TARGET(ChangeLog
68 COMMAND ${GENERATELOGS} "--group-by-day" "--include-rev"
69 "--linelen=78" "--output=${PROJECT_BINARY_DIR}/ChangeLog" "${PROJECT_SOURCE_DIR}"
70 )
71 ENDIF()
72
73
74 include(CheckIncludeFile)
75 include(CheckIncludeFileCXX)
76 include(CheckSymbolExists)
77 include(CheckLibraryExists)
78 include(CheckTypeSize)
79 include(CheckCSourceCompiles)
80 check_include_file(conio.h HAVE_CONIO_H)
81 check_symbol_exists(strncasecmp "string.h" HAVE_STRNCASECMP)
82 # Optional libraries: If we can find these, we will build with them
83 # Look for OpenBabel libraries
84 find_package(OpenBabel2)
85 IF(OPENBABEL2_FOUND)
86 SET(USE_OPENBABEL)
87 include_directories(${OPENBABEL2_INCLUDE_DIR})
88 message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
89 # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
90 ENDIF(OPENBABEL2_FOUND)
91
92 #Look for QHULL Libraries
93 find_package(QHULL)
94 IF(QHULL_FOUND)
95 SET(HAVE_QHULL 1)
96 include_directories(${QHULL_INCLUDE_DIR})
97 LINK_LIBRARIES(${QHULL_LIBRARIES})
98 ENDIF(QHULL_FOUND)
99
100 # zlib stuff
101 find_package(ZLIB)
102 if(ZLIB_FOUND)
103 SET(HAVE_LIBZ 1)
104 add_definitions(-DHAVE_LIBZ)
105 include_directories(${ZLIB_INCLUDE_DIR})
106 LINK_LIBRARIES(${ZLIB_LIBRARIES})
107 endif(ZLIB_FOUND)
108
109 #FFTW
110 FIND_PACKAGE(FFTW)
111 IF(FFTW_FOUND)
112 SET(HAVE_LIBFFTW 1)
113 SET(HAVE_FFTW3_H 1)
114 INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
115 LINK_LIBRARIES(${FFTW_LIBRARIES})
116 ENDIF(FFTW_FOUND)
117
118 # add a target to generate API documentation with Doxygen
119 find_package(Doxygen)
120 if(DOXYGEN_FOUND)
121 configure_file("${CMAKE_CURRENT_SOURCE_DIR}/doc/Doxyfile.in" "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile" @ONLY)
122 add_custom_target(doc
123 ${DOXYGEN_EXECUTABLE} "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile"
124 WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/doc"
125 COMMENT "Generating API documentation with Doxygen" VERBATIM
126 )
127 endif(DOXYGEN_FOUND)
128
129 FIND_PACKAGE(Perl)
130 IF(PERL_FOUND)
131 SET(PERL ${PERL_EXECUTABLE})
132 ELSE(PERL_FOUND)
133 MESSAGE(STATUS "Failed to find perl")
134 ENDIF(PERL_FOUND)
135
136 FIND_PACKAGE(PythonInterp)
137 IF(PYTHON_EXECUTABLE)
138 SET(PYTHON ${PYTHON_EXECUTABLE})
139 ELSE(PYTHON_EXECUTABLE)
140 MESSAGE(STATUS "Failed to find python")
141 ENDIF(PYTHON_EXECUTABLE)
142
143 SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
144
145 configure_file (
146 "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
147 "${PROJECT_BINARY_DIR}/config.h"
148 )
149 include_directories("${PROJECT_BINARY_DIR}" "${PROJECT_SOURCE_DIR}/src")
150
151
152 #Add executables for build
153 set (PROGRAMS
154 openmd
155 openmd_MPI
156 Dump2XYZ
157 simpleBuilder
158 StaticProps
159 DynamicProps
160 randomBuilder
161 nanoparticleBuilder
162 thermalizer
163 atom2md
164 Hydro)
165
166 set(SOURCE
167 src/antlr/ANTLRUtil.cpp
168 src/antlr/ASTFactory.cpp
169 src/antlr/ASTNULLType.cpp
170 src/antlr/ASTRefCount.cpp
171 src/antlr/BaseAST.cpp
172 src/antlr/BitSet.cpp
173 src/antlr/CharBuffer.cpp
174 src/antlr/CharScanner.cpp
175 src/antlr/CommonAST.cpp
176 src/antlr/CommonASTWithHiddenTokens.cpp
177 src/antlr/CommonHiddenStreamToken.cpp
178 src/antlr/CommonToken.cpp
179 src/antlr/InputBuffer.cpp
180 src/antlr/LLkParser.cpp
181 src/antlr/MismatchedCharException.cpp
182 src/antlr/MismatchedTokenException.cpp
183 src/antlr/NoViableAltException.cpp
184 src/antlr/NoViableAltForCharException.cpp
185 src/antlr/Parser.cpp
186 src/antlr/RecognitionException.cpp
187 src/antlr/String.cpp
188 src/antlr/Token.cpp
189 src/antlr/TokenBuffer.cpp
190 src/antlr/TokenRefCount.cpp
191 src/antlr/TokenStreamBasicFilter.cpp
192 src/antlr/TokenStreamHiddenTokenFilter.cpp
193 src/antlr/TokenStreamRewriteEngine.cpp
194 src/antlr/TokenStreamSelector.cpp
195 src/antlr/TreeParser.cpp
196 src/brains/BlockSnapshotManager.cpp
197 src/brains/DataStorage.cpp
198 src/brains/MoleculeCreator.cpp
199 src/brains/PairList.cpp
200 src/brains/Register.cpp
201 src/brains/SimSnapshotManager.cpp
202 src/brains/Snapshot.cpp
203 src/brains/Stats.cpp
204 src/constraints/Rattle.cpp
205 src/hydrodynamics/Ellipsoid.cpp
206 src/hydrodynamics/HydroProp.cpp
207 src/hydrodynamics/Sphere.cpp
208 src/integrators/DLM.cpp
209 src/integrators/Integrator.cpp
210 src/integrators/IntegratorFactory.cpp
211 src/integrators/LangevinDynamics.cpp
212 src/integrators/LDForceManager.cpp
213 src/integrators/NgammaT.cpp
214 src/integrators/NPAT.cpp
215 src/integrators/NPrT.cpp
216 src/integrators/NPT.cpp
217 src/integrators/NPTf.cpp
218 src/integrators/NPTi.cpp
219 src/integrators/NPTsz.cpp
220 src/integrators/NPTxyz.cpp
221 src/integrators/NVE.cpp
222 src/integrators/NVT.cpp
223 src/integrators/VelocityVerletIntegrator.cpp
224 src/io/AtomTypesSectionParser.cpp
225 src/io/BaseAtomTypesSectionParser.cpp
226 src/io/BendTypesSectionParser.cpp
227 src/io/BondTypesSectionParser.cpp
228 src/io/ChargeAtomTypesSectionParser.cpp
229 src/io/DirectionalAtomTypesSectionParser.cpp
230 src/io/EAMAtomTypesSectionParser.cpp
231 src/io/ForceFieldOptions.cpp
232 src/io/GayBerneAtomTypesSectionParser.cpp
233 src/io/Globals.cpp
234 src/io/gzstream.cpp
235 src/io/InversionTypesSectionParser.cpp
236 src/io/LennardJonesAtomTypesSectionParser.cpp
237 src/io/MultipoleAtomTypesSectionParser.cpp
238 src/io/NonBondedInteractionsSectionParser.cpp
239 src/io/OptionSectionParser.cpp
240 src/io/ParamConstraint.cpp
241 src/io/SCAtomTypesSectionParser.cpp
242 src/io/SectionParser.cpp
243 src/io/SectionParserManager.cpp
244 src/io/ShapeAtomTypesSectionParser.cpp
245 src/io/StickyAtomTypesSectionParser.cpp
246 src/io/StickyPowerAtomTypesSectionParser.cpp
247 src/io/TorsionTypesSectionParser.cpp
248 src/io/ZConsReader.cpp
249 src/lattice/CubicLattice.cpp
250 src/lattice/FCCLattice.cpp
251 src/lattice/Lattice.cpp
252 src/lattice/LatticeFactory.cpp
253 src/lattice/shapedLattice.cpp
254 src/math/ChebyshevT.cpp
255 src/math/ChebyshevU.cpp
256 src/math/CubicSpline.cpp
257 src/math/LegendrePolynomial.cpp
258 src/math/RealSphericalHarmonic.cpp
259 src/math/RMSD.cpp
260 src/math/SeqRandNumGen.cpp
261 src/math/SphericalHarmonic.cpp
262 src/math/Wigner3jm.cpp
263 src/mdParser/FilenameObserver.cpp
264 src/mdParser/MDLexer.cpp
265 src/mdParser/MDParser.cpp
266 src/mdParser/MDTreeParser.cpp
267 src/minimizers/MinimizerFactory.cpp
268 src/minimizers/MinimizerParameterSet.cpp
269 src/nonbonded/EAM.cpp
270 src/nonbonded/Electrostatic.cpp
271 src/nonbonded/GB.cpp
272 src/nonbonded/InteractionManager.cpp
273 src/nonbonded/LJ.cpp
274 src/nonbonded/MAW.cpp
275 src/nonbonded/Morse.cpp
276 src/nonbonded/RepulsivePower.cpp
277 src/nonbonded/SC.cpp
278 src/nonbonded/Sticky.cpp
279 src/nonbonded/SwitchingFunction.cpp
280 src/primitives/Atom.cpp
281 src/primitives/Bend.cpp
282 src/primitives/DirectionalAtom.cpp
283 src/primitives/GhostBend.cpp
284 src/primitives/GhostTorsion.cpp
285 src/primitives/Inversion.cpp
286 src/primitives/Molecule.cpp
287 src/primitives/RigidBody.cpp
288 src/primitives/StuntDouble.cpp
289 src/primitives/Torsion.cpp
290 src/primitives/UreyBradleyBend.cpp
291 src/restraints/MolecularRestraint.cpp
292 src/restraints/ObjectRestraint.cpp
293 src/selection/DistanceFinder.cpp
294 src/selection/HullFinder.cpp
295 src/selection/IndexFinder.cpp
296 src/selection/NameFinder.cpp
297 src/selection/SelectionCompiler.cpp
298 src/selection/SelectionEvaluator.cpp
299 src/selection/SelectionManager.cpp
300 src/selection/SelectionToken.cpp
301 src/selection/TokenMap.cpp
302 src/types/AtomStamp.cpp
303 src/types/AtomType.cpp
304 src/types/BendStamp.cpp
305 src/types/BondStamp.cpp
306 src/types/CharmmTorsionType.cpp
307 src/types/Component.cpp
308 src/types/CutoffGroupStamp.cpp
309 src/types/DirectionalAtomType.cpp
310 src/types/FragmentStamp.cpp
311 src/types/ImproperCosineInversionType.cpp
312 src/types/InversionStamp.cpp
313 src/types/MoleculeStamp.cpp
314 src/types/NonBondedInteractionType.cpp
315 src/types/RestraintStamp.cpp
316 src/types/RigidBodyStamp.cpp
317 src/types/ShapeAtomType.cpp
318 src/types/TorsionStamp.cpp
319 src/types/ZconsStamp.cpp
320 src/UseTheForce/Amber_FF.cpp
321 src/UseTheForce/CLAYFF.cpp
322 src/UseTheForce/DUFF.cpp
323 src/UseTheForce/EADM_FF.cpp
324 src/UseTheForce/EAM_FF.cpp
325 src/UseTheForce/ForceField.cpp
326 src/UseTheForce/ForceFieldFactory.cpp
327 src/UseTheForce/MnM_FF.cpp
328 src/UseTheForce/SC_FF.cpp
329 src/UseTheForce/SHAPES_FF.cpp
330 src/utils/ElementsTable.cpp
331 src/utils/MoLocator.cpp
332 src/utils/OpenMDBitSet.cpp
333 src/utils/PropertyMap.cpp
334 src/utils/StringTokenizer.cpp
335 src/utils/StringUtils.cpp
336 src/utils/Trim.cpp
337 src/utils/Utility.cpp
338 src/utils/wildcards.cpp
339 src/visitors/AtomNameVisitor.cpp
340 src/visitors/AtomVisitor.cpp
341 src/visitors/CompositeVisitor.cpp
342 src/visitors/LipidTransVisitor.cpp
343 src/visitors/OtherVisitor.cpp
344 src/visitors/ReplacementVisitor.cpp
345 src/visitors/RigidBodyVisitor.cpp
346 src/visitors/ZconsVisitor.cpp
347 )
348
349 set( PARALLEL_SOURCE
350 src/brains/ForceManager.cpp
351 src/brains/SimCreator.cpp
352 src/brains/SimInfo.cpp
353 src/brains/Thermo.cpp
354 src/constraints/ZconstraintForceManager.cpp
355 src/integrators/RNEMD.cpp
356 src/integrators/Velocitizer.cpp
357 src/io/DumpReader.cpp
358 src/io/DumpWriter.cpp
359 src/io/RestReader.cpp
360 src/io/RestWriter.cpp
361 src/io/StatWriter.cpp
362 src/io/ZConsWriter.cpp
363 src/io/ifstrstream.cpp
364 src/math/ParallelRandNumGen.cpp
365 src/minimizers/CGFamilyMinimizer.cpp
366 src/minimizers/Minimizer.cpp
367 src/minimizers/PRCG.cpp
368 src/minimizers/SDMinimizer.cpp
369 src/parallel/ForceDecomposition.cpp
370 src/parallel/ForceMatrixDecomposition.cpp
371 src/restraints/RestraintForceManager.cpp
372 src/restraints/ThermoIntegrationForceManager.cpp
373 src/utils/ProgressBar.cpp
374 src/utils/simError.cpp
375 )
376
377 IF(QHULL_FOUND)
378 set(QHULL_SOURCE
379 src/integrators/LangevinHullDynamics.cpp
380 src/math/Triangle.cpp
381 )
382 set(QHULL_PARALLEL_SOURCE
383 src/integrators/LangevinHullForceManager.cpp
384 src/math/ConvexHull.cpp
385 src/math/AlphaHull.cpp
386 )
387 ENDIF(QHULL_FOUND)
388
389 add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
390 add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
391
392 IF(MPI_FOUND)
393 add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
394 set_target_properties(openmd_parallel PROPERTIES
395 COMPILE_DEFINITIONS IS_MPI
396 )
397 ENDIF(MPI_FOUND)
398
399 add_executable(openmd src/applications/openmd/openmd.cpp)
400 target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
401
402 if (MPI_FOUND)
403 add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
404 set_target_properties(openmd_MPI PROPERTIES
405 COMPILE_DEFINITIONS IS_MPI
406 )
407 target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
408 INSTALL(TARGETS
409 openmd_parallel openmd_MPI
410 RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
411 LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
412 ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
413 )
414 ENDIF (MPI_FOUND)
415
416 set (DUMP2XYZSOURCE
417 src/applications/dump2Xyz/Dump2XYZ.cpp
418 src/applications/dump2Xyz/Dump2XYZCmd.cpp
419 )
420
421 set (DYNAMICPROPSSOURCE
422 src/applications/dynamicProps/ActionCorrFunc.cpp
423 src/applications/dynamicProps/CrossTimeCorrFunc.cpp
424 src/applications/dynamicProps/DipoleCorrFunc.cpp
425 src/applications/dynamicProps/DirectionalRCorrFunc.cpp
426 src/applications/dynamicProps/DynamicProps.cpp
427 src/applications/dynamicProps/EnergyCorrFunc.cpp
428 src/applications/dynamicProps/FrameTimeCorrFunc.cpp
429 src/applications/dynamicProps/LegendreCorrFunc.cpp
430 src/applications/dynamicProps/MomentumCorrFunc.cpp
431 src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
432 src/applications/dynamicProps/RadialRCorrFunc.cpp
433 src/applications/dynamicProps/RCorrFunc.cpp
434 src/applications/dynamicProps/StressCorrFunc.cpp
435 src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
436 src/applications/dynamicProps/ThetaCorrFunc.cpp
437 src/applications/dynamicProps/TimeCorrFunc.cpp
438 src/applications/dynamicProps/VCorrFunc.cpp
439 src/applications/dynamicProps/DynamicPropsCmd.cpp
440 )
441
442 set (HYDROSOURCE
443 src/applications/hydrodynamics/AnalyticalModel.cpp
444 src/applications/hydrodynamics/ApproximationModel.cpp
445 src/applications/hydrodynamics/BeadModel.cpp
446 src/applications/hydrodynamics/CompositeShape.cpp
447 src/applications/hydrodynamics/Hydro.cpp
448 src/applications/hydrodynamics/HydrodynamicsModel.cpp
449 src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
450 src/applications/hydrodynamics/RoughShell.cpp
451 src/applications/hydrodynamics/ShapeBuilder.cpp
452 src/applications/hydrodynamics/HydroCmd.cpp
453 )
454
455 set (STATICPROPSSOURCE
456 src/applications/staticProps/AngleR.cpp
457 src/applications/staticProps/BondAngleDistribution.cpp
458 src/applications/staticProps/BondOrderParameter.cpp
459 src/applications/staticProps/BOPofR.cpp
460 src/applications/staticProps/DensityPlot.cpp
461 src/applications/staticProps/GofAngle2.cpp
462 src/applications/staticProps/GofR.cpp
463 src/applications/staticProps/GofRAngle.cpp
464 src/applications/staticProps/GofRZ.cpp
465 src/applications/staticProps/GofXyz.cpp
466 src/applications/staticProps/GofZ.cpp
467 src/applications/staticProps/Hxy.cpp
468 src/applications/staticProps/NanoLength.cpp
469 src/applications/staticProps/NanoVolume.cpp
470 src/applications/staticProps/ObjectCount.cpp
471 src/applications/staticProps/P2OrderParameter.cpp
472 src/applications/staticProps/pAngle.cpp
473 src/applications/staticProps/RadialDistrFunc.cpp
474 src/applications/staticProps/RhoR.cpp
475 src/applications/staticProps/RhoZ.cpp
476 src/applications/staticProps/RippleOP.cpp
477 src/applications/staticProps/SCDOrderParameter.cpp
478 src/applications/staticProps/StaticProps.cpp
479 src/applications/staticProps/TetrahedralityParam.cpp
480 src/applications/staticProps/TwoDGofR.cpp
481 src/applications/staticProps/StaticPropsCmd.cpp
482 )
483
484 set (NANOPARTICLEBUILDERSOURCE
485 src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
486 src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
487 src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.cpp
488 )
489
490 set (RANDOMBUILDERSOURCE
491 src/applications/randomBuilder/randomBuilder.cpp
492 src/applications/randomBuilder/randomBuilderCmd.cpp
493 )
494
495 set(SIMPLEBUILDERSOURCE
496 src/applications/simpleBuilder/simpleBuilder.cpp
497 src/applications/simpleBuilder/simpleBuilderCmd.cpp
498 )
499
500 set(THERMALIZERSOURCE
501 src/applications/thermalizer/thermalizer.cpp
502 src/applications/thermalizer/thermalizerCmd.cpp
503 )
504
505 add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
506 target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
507 add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
508 target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
509 add_executable(Hydro ${HYDROSOURCE})
510 target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
511 add_executable(StaticProps ${STATICPROPSSOURCE})
512 target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
513 add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
514 target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
515 add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
516 target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
517 add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
518 target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
519 add_executable(thermalizer ${THERMALIZERSOURCE})
520 target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
521
522 if (OPENBABEL2_FOUND)
523 set (ATOM2MDSOURCE
524 src/applications/atom2md/atom2md.cpp
525 src/applications/atom2md/openmdformat.cpp
526 )
527 add_executable(atom2md ${ATOM2MDSOURCE})
528 target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
529 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
530 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
531 ENDIF (OPENBABEL2_FOUND)
532
533
534 set(PY_FILES
535 src/applications/hydrodynamics/diffExplainer
536 src/applications/utilities/affineScale
537 src/applications/utilities/dumpConverter
538 src/applications/utilities/md-solvator
539 src/applications/utilities/md2md
540 src/applications/utilities/mdSplit
541 src/applications/utilities/principalAxisCalculator
542 src/applications/utilities/stat2visco
543 src/applications/utilities/waterRotator
544 src/applications/utilities/waterReplacer
545 )
546
547 IF(PYTHON_EXECUTABLE)
548 foreach(PY_FILE ${PY_FILES})
549 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
550 CONFIGURE_FILE(${PY_FILE}
551 "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
552 INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
553 DESTINATION bin
554 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
555 endforeach(PY_FILE)
556 ENDIF(PYTHON_EXECUTABLE)
557
558 set(PERL_FILES
559 src/applications/utilities/solvator
560 src/applications/utilities/waterBoxer
561 )
562
563 IF(PERL_FOUND)
564 foreach(PERL_FILE ${PERL_FILES})
565 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
566 configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
567 INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
568 DESTINATION bin
569 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
570
571 endforeach(PERL_FILE)
572 ENDIF(PERL_FOUND)
573
574 INSTALL(FILES AUTHORS LICENSE README INSTALL DESTINATION .
575 PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
576 INSTALL(TARGETS
577 openmd_core
578 openmd_single
579 openmd
580 Dump2XYZ
581 simpleBuilder
582 StaticProps
583 DynamicProps
584 randomBuilder
585 nanoparticleBuilder
586 thermalizer
587 Hydro
588 RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
589 LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
590 ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
591 )
592
593 install(DIRECTORY forceFields/
594 DESTINATION forceFields
595 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
596 PATTERN ".svn" EXCLUDE
597 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
598 install(DIRECTORY samples/
599 DESTINATION samples
600 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
601 PATTERN ".svn" EXCLUDE
602 PATTERN "*.dump" EXCLUDE
603 PATTERN "*.stat" EXCLUDE
604 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
605 INSTALL(FILES "${CMAKE_CURRENT_SOURCE_DIR}/doc/OpenMDmanual.pdf"
606 DESTINATION doc
607 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)