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root/OpenMD/branches/development/CMakeLists.txt
Revision: 1650
Committed: Tue Sep 27 12:42:03 2011 UTC (13 years, 8 months ago) by gezelter
Content type: text/plain
File size: 19539 byte(s)
Log Message: 
fixing install permissions

File Contents

# Content
1 # Top level cmake script for OpenMD.
2
3 cmake_minimum_required (VERSION 2.6)
4 project(OpenMD)
5
6 # OpenMD version number.
7 set (VERSION_MAJOR "2")
8 set (VERSION_MINOR "0")
9 set (VERSION_TINY "0")
10
11 # cmake modules that are needed to build oopse
12 SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14 SET(CMAKE_INSTALL_PREFIX
15 "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16 )
17 ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18
19 # ---------- Setup output Directories -------------------------
20 SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21 ${PROJECT_BINARY_DIR}/lib
22 CACHE PATH
23 "Single directory for all shared libraries"
24 )
25 # --------- Setup the Executable output Directory -------------
26 SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27 ${PROJECT_BINARY_DIR}/bin
28 CACHE PATH
29 "Single directory for all Executables."
30 )
31 # --------- Setup the static library directory -------------
32 SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33 ${PROJECT_BINARY_DIR}/lib
34 CACHE PATH
35 "Single directory for all static libraries."
36 )
37
38
39 enable_language(CXX C)
40
41 if ( APPLE )
42 set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43 set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44 endif( APPLE )
45 FIND_PACKAGE(MPI)
46 IF ( MPI_FOUND )
47 SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48 INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49 ENDIF()
50
51 FIND_PACKAGE(Subversion)
52 IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53 Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54 MESSAGE("Current revision is ${Project_WC_REVISION}")
55 Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56 SET(SVN_REV ${Project_WC_REVISION})
57 ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58 ENDIF()
59
60 # Optional libraries: If we can find these, we will build with them
61 # Look for OpenBabel libraries
62 find_package(OpenBabel2)
63 IF(OPENBABEL2_FOUND)
64 SET(USE_OPENBABEL)
65 include_directories(${OPENBABEL2_INCLUDE_DIR})
66 message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
67 # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
68 ENDIF(OPENBABEL2_FOUND)
69
70 #Look for QHULL Libraries
71 find_package(QHULL)
72 IF(QHULL_FOUND)
73 SET(HAVE_QHULL 1)
74 include_directories(${QHULL_INCLUDE_DIR})
75 LINK_LIBRARIES(${QHULL_LIBRARIES})
76 ENDIF(QHULL_FOUND)
77
78
79 # zlib stuff
80 find_package(ZLIB)
81 if(ZLIB_FOUND)
82 SET(HAVE_LIBZ 1)
83 add_definitions(-DHAVE_LIBZ)
84 include_directories(${ZLIB_INCLUDE_DIR})
85 LINK_LIBRARIES(${ZLIB_LIBRARIES})
86 endif(ZLIB_FOUND)
87
88 #FFTW
89 INCLUDE(${CMAKE_MODULE_PATH}/FindFFTW.cmake)
90 IF(FFTW_FOUND)
91 SET(HAVE_LIBFFTW 1)
92 SET(HAVE_FFTW3_H)
93 INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
94 LINK_LIBRARIES(${FFTW_LIBRARIES})
95 ENDIF(FFTW_FOUND)
96
97
98 #include checks
99 include(CheckIncludeFile)
100 CHECK_INCLUDE_FILE(fftw3.h HAVE_FFTW3_H)
101 CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
102 CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
103 CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
104 check_include_file(limits.h HAVE_LIMITS_H)
105 check_include_file(stdlib.h HAVE_STDLIB_H)
106 check_include_file(string.h HAVE_STRING_H)
107 check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
108 check_include_file(unistd.h HAVE_UNISTD_H)
109
110 #symbol checks
111 include(CheckSymbolExists)
112
113 #function checks
114 include(CheckFunctionExists)
115 check_function_exists(atexit HAVE_ATEXIT)
116 check_function_exists(floor HAVE_FLOOR)
117 check_function_exists(pow HAVE_POW)
118 check_function_exists(select HAVE_SELECT)
119 check_function_exists(sqrt HAVE_SQRT)
120 check_function_exists(strcasecmp HAVE_STRCASECMP)
121 check_function_exists(strchr HAVE_STRCHR)
122 check_function_exists(strdup HAVE_STRDUP)
123 check_function_exists(strncasecmp HAVE_STRNCASECMP)
124 check_function_exists(strstr HAVE_STRSTR)
125 check_function_exists(strtol HAVE_STRTOL)
126 check_function_exists(strtoull HAVE_STRTOULL)
127 check_function_exists(sysmp HAVE_SYSMP)
128 check_function_exists(table HAVE_TABLE)
129
130
131 FIND_PACKAGE(Perl)
132 IF(PERL_FOUND)
133 SET(PERL ${PERL_EXECUTABLE})
134 ELSE(PERL_FOUND)
135 MESSAGE(STATUS "Failed to find perl")
136 ENDIF(PERL_FOUND)
137
138 FIND_PACKAGE(PythonInterp)
139 IF(PYTHON_EXECUTABLE)
140 SET(PYTHON ${PYTHON_EXECUTABLE})
141 ELSE(PYTHON_EXECUTABLE)
142 MESSAGE(STATUS "Failed to find python")
143 ENDIF(PYTHON_EXECUTABLE)
144
145 SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
146
147
148 configure_file (
149 "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
150 "${PROJECT_SOURCE_DIR}/src/config.h"
151 )
152 include_directories (${PROJECT_SOURCE_DIR}/src)
153
154 #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h)
155
156
157 #Add executables for build
158 set (PROGRAMS
159 openmd
160 openmd_MPI
161 Dump2XYZ
162 simpleBuilder
163 StaticProps
164 DynamicProps
165 randomBuilder
166 nanoparticleBuilder
167 thermalizer
168 atom2md
169 Hydro)
170
171 set(SOURCE
172 src/antlr/ANTLRUtil.cpp
173 src/antlr/ASTFactory.cpp
174 src/antlr/ASTNULLType.cpp
175 src/antlr/ASTRefCount.cpp
176 src/antlr/BaseAST.cpp
177 src/antlr/BitSet.cpp
178 src/antlr/CharBuffer.cpp
179 src/antlr/CharScanner.cpp
180 src/antlr/CommonAST.cpp
181 src/antlr/CommonASTWithHiddenTokens.cpp
182 src/antlr/CommonHiddenStreamToken.cpp
183 src/antlr/CommonToken.cpp
184 src/antlr/InputBuffer.cpp
185 src/antlr/LLkParser.cpp
186 src/antlr/MismatchedCharException.cpp
187 src/antlr/MismatchedTokenException.cpp
188 src/antlr/NoViableAltException.cpp
189 src/antlr/NoViableAltForCharException.cpp
190 src/antlr/Parser.cpp
191 src/antlr/RecognitionException.cpp
192 src/antlr/String.cpp
193 src/antlr/Token.cpp
194 src/antlr/TokenBuffer.cpp
195 src/antlr/TokenRefCount.cpp
196 src/antlr/TokenStreamBasicFilter.cpp
197 src/antlr/TokenStreamHiddenTokenFilter.cpp
198 src/antlr/TokenStreamRewriteEngine.cpp
199 src/antlr/TokenStreamSelector.cpp
200 src/antlr/TreeParser.cpp
201 src/brains/BlockSnapshotManager.cpp
202 src/brains/DataStorage.cpp
203 src/brains/MoleculeCreator.cpp
204 src/brains/PairList.cpp
205 src/brains/Register.cpp
206 src/brains/SimSnapshotManager.cpp
207 src/brains/Snapshot.cpp
208 src/brains/Stats.cpp
209 src/constraints/Rattle.cpp
210 src/hydrodynamics/Ellipsoid.cpp
211 src/hydrodynamics/HydroProp.cpp
212 src/hydrodynamics/Sphere.cpp
213 src/integrators/DLM.cpp
214 src/integrators/Integrator.cpp
215 src/integrators/IntegratorFactory.cpp
216 src/integrators/LangevinDynamics.cpp
217 src/integrators/LDForceManager.cpp
218 src/integrators/NgammaT.cpp
219 src/integrators/NPAT.cpp
220 src/integrators/NPrT.cpp
221 src/integrators/NPT.cpp
222 src/integrators/NPTf.cpp
223 src/integrators/NPTi.cpp
224 src/integrators/NPTsz.cpp
225 src/integrators/NPTxyz.cpp
226 src/integrators/NVE.cpp
227 src/integrators/NVT.cpp
228 src/integrators/VelocityVerletIntegrator.cpp
229 src/io/AtomTypesSectionParser.cpp
230 src/io/BaseAtomTypesSectionParser.cpp
231 src/io/BendTypesSectionParser.cpp
232 src/io/BondTypesSectionParser.cpp
233 src/io/ChargeAtomTypesSectionParser.cpp
234 src/io/DirectionalAtomTypesSectionParser.cpp
235 src/io/EAMAtomTypesSectionParser.cpp
236 src/io/ForceFieldOptions.cpp
237 src/io/GayBerneAtomTypesSectionParser.cpp
238 src/io/Globals.cpp
239 src/io/gzstream.cpp
240 src/io/InversionTypesSectionParser.cpp
241 src/io/LennardJonesAtomTypesSectionParser.cpp
242 src/io/MultipoleAtomTypesSectionParser.cpp
243 src/io/NonBondedInteractionsSectionParser.cpp
244 src/io/OptionSectionParser.cpp
245 src/io/ParamConstraint.cpp
246 src/io/SCAtomTypesSectionParser.cpp
247 src/io/SectionParser.cpp
248 src/io/SectionParserManager.cpp
249 src/io/ShapeAtomTypesSectionParser.cpp
250 src/io/StickyAtomTypesSectionParser.cpp
251 src/io/StickyPowerAtomTypesSectionParser.cpp
252 src/io/TorsionTypesSectionParser.cpp
253 src/io/ZConsReader.cpp
254 src/lattice/CubicLattice.cpp
255 src/lattice/FCCLattice.cpp
256 src/lattice/Lattice.cpp
257 src/lattice/LatticeFactory.cpp
258 src/lattice/shapedLattice.cpp
259 src/math/ChebyshevT.cpp
260 src/math/ChebyshevU.cpp
261 src/math/CubicSpline.cpp
262 src/math/LegendrePolynomial.cpp
263 src/math/RealSphericalHarmonic.cpp
264 src/math/RMSD.cpp
265 src/math/SeqRandNumGen.cpp
266 src/math/SphericalHarmonic.cpp
267 src/math/Wigner3jm.cpp
268 src/mdParser/FilenameObserver.cpp
269 src/mdParser/MDLexer.cpp
270 src/mdParser/MDParser.cpp
271 src/mdParser/MDTreeParser.cpp
272 src/minimizers/MinimizerFactory.cpp
273 src/minimizers/MinimizerParameterSet.cpp
274 src/nonbonded/EAM.cpp
275 src/nonbonded/Electrostatic.cpp
276 src/nonbonded/GB.cpp
277 src/nonbonded/InteractionManager.cpp
278 src/nonbonded/LJ.cpp
279 src/nonbonded/MAW.cpp
280 src/nonbonded/Morse.cpp
281 src/nonbonded/RepulsivePower.cpp
282 src/nonbonded/SC.cpp
283 src/nonbonded/Sticky.cpp
284 src/nonbonded/SwitchingFunction.cpp
285 src/primitives/Atom.cpp
286 src/primitives/Bend.cpp
287 src/primitives/DirectionalAtom.cpp
288 src/primitives/GhostBend.cpp
289 src/primitives/GhostTorsion.cpp
290 src/primitives/Inversion.cpp
291 src/primitives/Molecule.cpp
292 src/primitives/RigidBody.cpp
293 src/primitives/StuntDouble.cpp
294 src/primitives/Torsion.cpp
295 src/primitives/UreyBradleyBend.cpp
296 src/restraints/MolecularRestraint.cpp
297 src/restraints/ObjectRestraint.cpp
298 src/selection/DistanceFinder.cpp
299 src/selection/HullFinder.cpp
300 src/selection/IndexFinder.cpp
301 src/selection/NameFinder.cpp
302 src/selection/SelectionCompiler.cpp
303 src/selection/SelectionEvaluator.cpp
304 src/selection/SelectionManager.cpp
305 src/selection/SelectionToken.cpp
306 src/selection/TokenMap.cpp
307 src/types/AtomStamp.cpp
308 src/types/AtomType.cpp
309 src/types/BendStamp.cpp
310 src/types/BondStamp.cpp
311 src/types/CharmmTorsionType.cpp
312 src/types/Component.cpp
313 src/types/CutoffGroupStamp.cpp
314 src/types/DirectionalAtomType.cpp
315 src/types/FragmentStamp.cpp
316 src/types/ImproperCosineInversionType.cpp
317 src/types/InversionStamp.cpp
318 src/types/MoleculeStamp.cpp
319 src/types/NonBondedInteractionType.cpp
320 src/types/RestraintStamp.cpp
321 src/types/RigidBodyStamp.cpp
322 src/types/ShapeAtomType.cpp
323 src/types/TorsionStamp.cpp
324 src/types/ZconsStamp.cpp
325 src/UseTheForce/Amber_FF.cpp
326 src/UseTheForce/CLAYFF.cpp
327 src/UseTheForce/DUFF.cpp
328 src/UseTheForce/EADM_FF.cpp
329 src/UseTheForce/EAM_FF.cpp
330 src/UseTheForce/ForceField.cpp
331 src/UseTheForce/ForceFieldFactory.cpp
332 src/UseTheForce/MnM_FF.cpp
333 src/UseTheForce/SC_FF.cpp
334 src/UseTheForce/SHAPES_FF.cpp
335 src/utils/ElementsTable.cpp
336 src/utils/MoLocator.cpp
337 src/utils/OpenMDBitSet.cpp
338 src/utils/PropertyMap.cpp
339 src/utils/StringTokenizer.cpp
340 src/utils/StringUtils.cpp
341 src/utils/Trim.cpp
342 src/utils/Utility.cpp
343 src/utils/wildcards.cpp
344 src/visitors/AtomNameVisitor.cpp
345 src/visitors/AtomVisitor.cpp
346 src/visitors/CompositeVisitor.cpp
347 src/visitors/LipidTransVisitor.cpp
348 src/visitors/OtherVisitor.cpp
349 src/visitors/ReplacementVisitor.cpp
350 src/visitors/RigidBodyVisitor.cpp
351 src/visitors/ZconsVisitor.cpp
352 )
353
354 set( PARALLEL_SOURCE
355 src/brains/ForceManager.cpp
356 src/brains/SimCreator.cpp
357 src/brains/SimInfo.cpp
358 src/brains/Thermo.cpp
359 src/constraints/ZconstraintForceManager.cpp
360 src/integrators/RNEMD.cpp
361 src/integrators/Velocitizer.cpp
362 src/io/DumpReader.cpp
363 src/io/DumpWriter.cpp
364 src/io/RestReader.cpp
365 src/io/RestWriter.cpp
366 src/io/StatWriter.cpp
367 src/io/ZConsWriter.cpp
368 src/io/ifstrstream.cpp
369 src/math/ParallelRandNumGen.cpp
370 src/minimizers/CGFamilyMinimizer.cpp
371 src/minimizers/Minimizer.cpp
372 src/minimizers/PRCG.cpp
373 src/minimizers/SDMinimizer.cpp
374 src/parallel/ForceDecomposition.cpp
375 src/parallel/ForceMatrixDecomposition.cpp
376 src/restraints/RestraintForceManager.cpp
377 src/restraints/ThermoIntegrationForceManager.cpp
378 src/utils/ProgressBar.cpp
379 src/utils/simError.c
380 )
381
382 IF(QHULL_FOUND)
383 set(QHULL_SOURCE
384 src/integrators/LangevinHullDynamics.cpp
385 src/math/Triangle.cpp
386 )
387 set(QHULL_PARALLEL_SOURCE
388 src/integrators/LangevinHullForceManager.cpp
389 src/math/ConvexHull.cpp
390 src/math/AlphaHull.cpp
391 )
392 ENDIF(QHULL_FOUND)
393
394 add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
395 add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
396
397 IF(MPI_FOUND)
398 add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
399 set_target_properties(openmd_parallel PROPERTIES
400 COMPILE_DEFINITIONS IS_MPI
401 )
402 ENDIF(MPI_FOUND)
403
404 add_executable(openmd src/applications/openmd/openmd.cpp)
405 target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
406
407 if (MPI_FOUND)
408 add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
409 set_target_properties(openmd_MPI PROPERTIES
410 COMPILE_DEFINITIONS IS_MPI
411 )
412 target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
413 INSTALL(TARGETS
414 openmd_parallel openmd_MPI
415 RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
416 LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
417 ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
418 )
419 ENDIF (MPI_FOUND)
420
421 set (DUMP2XYZSOURCE
422 src/applications/dump2Xyz/Dump2XYZ.cpp
423 src/applications/dump2Xyz/Dump2XYZCmd.c
424 )
425
426 set (DYNAMICPROPSSOURCE
427 src/applications/dynamicProps/ActionCorrFunc.cpp
428 src/applications/dynamicProps/CrossTimeCorrFunc.cpp
429 src/applications/dynamicProps/DipoleCorrFunc.cpp
430 src/applications/dynamicProps/DirectionalRCorrFunc.cpp
431 src/applications/dynamicProps/DynamicProps.cpp
432 src/applications/dynamicProps/EnergyCorrFunc.cpp
433 src/applications/dynamicProps/FrameTimeCorrFunc.cpp
434 src/applications/dynamicProps/LegendreCorrFunc.cpp
435 src/applications/dynamicProps/MomentumCorrFunc.cpp
436 src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
437 src/applications/dynamicProps/RadialRCorrFunc.cpp
438 src/applications/dynamicProps/RCorrFunc.cpp
439 src/applications/dynamicProps/StressCorrFunc.cpp
440 src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
441 src/applications/dynamicProps/ThetaCorrFunc.cpp
442 src/applications/dynamicProps/TimeCorrFunc.cpp
443 src/applications/dynamicProps/VCorrFunc.cpp
444 src/applications/dynamicProps/DynamicPropsCmd.c
445 )
446
447 set (HYDROSOURCE
448 src/applications/hydrodynamics/AnalyticalModel.cpp
449 src/applications/hydrodynamics/ApproximationModel.cpp
450 src/applications/hydrodynamics/BeadModel.cpp
451 src/applications/hydrodynamics/CompositeShape.cpp
452 src/applications/hydrodynamics/Hydro.cpp
453 src/applications/hydrodynamics/HydrodynamicsModel.cpp
454 src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
455 src/applications/hydrodynamics/RoughShell.cpp
456 src/applications/hydrodynamics/ShapeBuilder.cpp
457 src/applications/hydrodynamics/HydroCmd.c
458 )
459
460 set (STATICPROPSSOURCE
461 src/applications/staticProps/AngleR.cpp
462 src/applications/staticProps/BondAngleDistribution.cpp
463 src/applications/staticProps/BondOrderParameter.cpp
464 src/applications/staticProps/BOPofR.cpp
465 src/applications/staticProps/DensityPlot.cpp
466 src/applications/staticProps/GofAngle2.cpp
467 src/applications/staticProps/GofR.cpp
468 src/applications/staticProps/GofRAngle.cpp
469 src/applications/staticProps/GofRZ.cpp
470 src/applications/staticProps/GofXyz.cpp
471 src/applications/staticProps/GofZ.cpp
472 src/applications/staticProps/Hxy.cpp
473 src/applications/staticProps/NanoLength.cpp
474 src/applications/staticProps/NanoVolume.cpp
475 src/applications/staticProps/ObjectCount.cpp
476 src/applications/staticProps/P2OrderParameter.cpp
477 src/applications/staticProps/pAngle.cpp
478 src/applications/staticProps/RadialDistrFunc.cpp
479 src/applications/staticProps/RhoR.cpp
480 src/applications/staticProps/RhoZ.cpp
481 src/applications/staticProps/RippleOP.cpp
482 src/applications/staticProps/SCDOrderParameter.cpp
483 src/applications/staticProps/StaticProps.cpp
484 src/applications/staticProps/TetrahedralityParam.cpp
485 src/applications/staticProps/TwoDGofR.cpp
486 src/applications/staticProps/StaticPropsCmd.c
487 )
488
489 set (NANOPARTICLEBUILDERSOURCE
490 src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
491 src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
492 src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.c
493 )
494
495 set (RANDOMBUILDERSOURCE
496 src/applications/randomBuilder/randomBuilder.cpp
497 src/applications/randomBuilder/randomBuilderCmd.c
498 )
499
500 set(SIMPLEBUILDERSOURCE
501 src/applications/simpleBuilder/simpleBuilder.cpp
502 src/applications/simpleBuilder/simpleBuilderCmd.c
503 )
504
505 set(THERMALIZERSOURCE
506 src/applications/thermalizer/thermalizer.cpp
507 src/applications/thermalizer/thermalizerCmd.c
508 )
509
510 add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
511 target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
512 add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
513 target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
514 add_executable(Hydro ${HYDROSOURCE})
515 target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
516 add_executable(StaticProps ${STATICPROPSSOURCE})
517 target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
518 add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
519 target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
520 add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
521 target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
522 add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
523 target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
524 add_executable(thermalizer ${THERMALIZERSOURCE})
525 target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
526
527 if (OPENBABEL2_FOUND)
528 set (ATOM2MDSOURCE
529 src/applications/atom2md/atom2md.cpp
530 src/applications/atom2md/openmdformat.cpp
531 )
532 add_executable(atom2md ${ATOM2MDSOURCE})
533 target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
534 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
535 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
536 ENDIF (OPENBABEL2_FOUND)
537
538
539 set(PY_FILES
540 src/applications/hydrodynamics/diffExplainer
541 src/applications/utilities/affineScale
542 src/applications/utilities/dumpConverter
543 src/applications/utilities/md-solvator
544 src/applications/utilities/md2md
545 src/applications/utilities/mdSplit
546 src/applications/utilities/principalAxisCalculator
547 src/applications/utilities/stat2visco
548 src/applications/utilities/waterRotator
549 )
550
551 IF(PYTHON_EXECUTABLE)
552 foreach(PY_FILE ${PY_FILES})
553 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
554 CONFIGURE_FILE(${PY_FILE}
555 "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
556 INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
557 DESTINATION bin
558 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
559 endforeach(PY_FILE)
560 ENDIF(PYTHON_EXECUTABLE)
561
562 set(PERL_FILES
563 src/applications/utilities/solvator
564 src/applications/utilities/waterBoxer
565 )
566
567 IF(PERL_FOUND)
568 foreach(PERL_FILE ${PERL_FILES})
569 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
570 configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
571 INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
572 DESTINATION bin
573 PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
574
575 endforeach(PERL_FILE)
576 ENDIF(PERL_FOUND)
577
578 INSTALL(FILES AUTHORS LICENSE README DESTINATION .
579 PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
580 INSTALL(TARGETS
581 openmd_core
582 openmd_single
583 openmd
584 Dump2XYZ
585 simpleBuilder
586 StaticProps
587 DynamicProps
588 randomBuilder
589 nanoparticleBuilder
590 thermalizer
591 Hydro
592 RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
593 LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
594 ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
595 )
596
597 install(DIRECTORY forceFields/
598 DESTINATION forceFields
599 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
600 PATTERN ".svn" EXCLUDE
601 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
602 install(DIRECTORY samples/
603 DESTINATION samples
604 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
605 PATTERN ".svn" EXCLUDE
606 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)