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root/OpenMD/branches/development/CMakeLists.txt
Revision: 1668
Committed: Fri Jan 6 19:03:05 2012 UTC (13 years, 4 months ago) by gezelter
Content type: text/plain
File size: 19692 byte(s)
Log Message: 
Some fixes for CMake and single precision builds

File Contents

# User Rev Content
1 chuckv 1466 # Top level cmake script for OpenMD.
2     project(OpenMD)
3 gezelter 1668 # project(OpenMD CXX)
4 chuckv 1466
5 gezelter 1668 CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
6    
7     SET(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake/modules")
8    
9     if (NOT CMAKE_BUILD_TYPE)
10     set(CMAKE_BUILD_TYPE "Release")
11     endif()
12    
13     include(CheckCXXCompilerFlag)
14    
15 chuckv 1466 # OpenMD version number.
16 chuckv 1496 set (VERSION_MAJOR "2")
17     set (VERSION_MINOR "0")
18     set (VERSION_TINY "0")
19 chuckv 1466
20 gezelter 1668 # Should
21     option(SINGLE_PRECISION "Build Single precision (float) version" OFF)
22    
23    
24 gezelter 1647 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
25     SET(CMAKE_INSTALL_PREFIX
26     "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
27     )
28     ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
29 chuckv 1466
30 gezelter 1647 # ---------- Setup output Directories -------------------------
31     SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
32     ${PROJECT_BINARY_DIR}/lib
33     CACHE PATH
34     "Single directory for all shared libraries"
35     )
36     # --------- Setup the Executable output Directory -------------
37     SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
38     ${PROJECT_BINARY_DIR}/bin
39     CACHE PATH
40     "Single directory for all Executables."
41     )
42     # --------- Setup the static library directory -------------
43     SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
44     ${PROJECT_BINARY_DIR}/lib
45     CACHE PATH
46     "Single directory for all static libraries."
47     )
48    
49 gezelter 1636 if ( APPLE )
50     set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
51     set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
52     endif( APPLE )
53     FIND_PACKAGE(MPI)
54     IF ( MPI_FOUND )
55     SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
56     INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
57     ENDIF()
58    
59     FIND_PACKAGE(Subversion)
60     IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
61     Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
62     MESSAGE("Current revision is ${Project_WC_REVISION}")
63     Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
64     SET(SVN_REV ${Project_WC_REVISION})
65     ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
66 gezelter 1652 SET(GENERATELOGS "${PROJECT_SOURCE_DIR}/doc/svn2cl")
67     ADD_CUSTOM_TARGET(ChangeLog
68     COMMAND ${GENERATELOGS} "--group-by-day" "--include-rev"
69     "--linelen=78" "--output=${PROJECT_BINARY_DIR}/ChangeLog" "${PROJECT_SOURCE_DIR}"
70     )
71 gezelter 1636 ENDIF()
72    
73 gezelter 1668
74     include(CheckIncludeFile)
75     include(CheckIncludeFileCXX)
76     include(CheckSymbolExists)
77     include(CheckLibraryExists)
78     include(CheckTypeSize)
79     include(CheckCSourceCompiles)
80     check_include_file(conio.h HAVE_CONIO_H)
81     check_symbol_exists(strncasecmp "string.h" HAVE_STRNCASECMP)
82 chuckv 1466 # Optional libraries: If we can find these, we will build with them
83     # Look for OpenBabel libraries
84 chuckv 1496 find_package(OpenBabel2)
85     IF(OPENBABEL2_FOUND)
86     SET(USE_OPENBABEL)
87     include_directories(${OPENBABEL2_INCLUDE_DIR})
88     message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
89     # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
90     ENDIF(OPENBABEL2_FOUND)
91    
92 chuckv 1466 #Look for QHULL Libraries
93     find_package(QHULL)
94 chuckv 1496 IF(QHULL_FOUND)
95     SET(HAVE_QHULL 1)
96 chuckv 1500 include_directories(${QHULL_INCLUDE_DIR})
97 chuckv 1496 LINK_LIBRARIES(${QHULL_LIBRARIES})
98     ENDIF(QHULL_FOUND)
99 chuckv 1466
100 chuckv 1496 # zlib stuff
101     find_package(ZLIB)
102     if(ZLIB_FOUND)
103     SET(HAVE_LIBZ 1)
104     add_definitions(-DHAVE_LIBZ)
105     include_directories(${ZLIB_INCLUDE_DIR})
106     LINK_LIBRARIES(${ZLIB_LIBRARIES})
107     endif(ZLIB_FOUND)
108    
109     #FFTW
110 gezelter 1668 FIND_PACKAGE(FFTW)
111 chuckv 1496 IF(FFTW_FOUND)
112     SET(HAVE_LIBFFTW 1)
113 gezelter 1668 SET(HAVE_FFTW3_H 1)
114 chuckv 1496 INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
115     LINK_LIBRARIES(${FFTW_LIBRARIES})
116     ENDIF(FFTW_FOUND)
117    
118 gezelter 1651 # add a target to generate API documentation with Doxygen
119     find_package(Doxygen)
120     if(DOXYGEN_FOUND)
121     configure_file("${CMAKE_CURRENT_SOURCE_DIR}/doc/Doxyfile.in" "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile" @ONLY)
122     add_custom_target(doc
123     ${DOXYGEN_EXECUTABLE} "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile"
124     WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/doc"
125     COMMENT "Generating API documentation with Doxygen" VERBATIM
126     )
127     endif(DOXYGEN_FOUND)
128 chuckv 1496
129 gezelter 1639 FIND_PACKAGE(Perl)
130     IF(PERL_FOUND)
131     SET(PERL ${PERL_EXECUTABLE})
132     ELSE(PERL_FOUND)
133     MESSAGE(STATUS "Failed to find perl")
134     ENDIF(PERL_FOUND)
135    
136     FIND_PACKAGE(PythonInterp)
137     IF(PYTHON_EXECUTABLE)
138     SET(PYTHON ${PYTHON_EXECUTABLE})
139     ELSE(PYTHON_EXECUTABLE)
140     MESSAGE(STATUS "Failed to find python")
141     ENDIF(PYTHON_EXECUTABLE)
142    
143     SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
144    
145 chuckv 1496 configure_file (
146     "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
147 gezelter 1655 "${PROJECT_BINARY_DIR}/config.h"
148     )
149     include_directories("${PROJECT_BINARY_DIR}" "${PROJECT_SOURCE_DIR}/src")
150 chuckv 1496
151    
152 chuckv 1466 #Add executables for build
153 gezelter 1639 set (PROGRAMS
154     openmd
155     openmd_MPI
156     Dump2XYZ
157     simpleBuilder
158     StaticProps
159     DynamicProps
160     randomBuilder
161     nanoparticleBuilder
162     thermalizer
163     atom2md
164     Hydro)
165 chuckv 1466
166 gezelter 1639 set(SOURCE
167     src/antlr/ANTLRUtil.cpp
168     src/antlr/ASTFactory.cpp
169     src/antlr/ASTNULLType.cpp
170     src/antlr/ASTRefCount.cpp
171     src/antlr/BaseAST.cpp
172     src/antlr/BitSet.cpp
173     src/antlr/CharBuffer.cpp
174     src/antlr/CharScanner.cpp
175     src/antlr/CommonAST.cpp
176     src/antlr/CommonASTWithHiddenTokens.cpp
177     src/antlr/CommonHiddenStreamToken.cpp
178     src/antlr/CommonToken.cpp
179     src/antlr/InputBuffer.cpp
180     src/antlr/LLkParser.cpp
181     src/antlr/MismatchedCharException.cpp
182     src/antlr/MismatchedTokenException.cpp
183     src/antlr/NoViableAltException.cpp
184     src/antlr/NoViableAltForCharException.cpp
185     src/antlr/Parser.cpp
186     src/antlr/RecognitionException.cpp
187     src/antlr/String.cpp
188     src/antlr/Token.cpp
189     src/antlr/TokenBuffer.cpp
190     src/antlr/TokenRefCount.cpp
191     src/antlr/TokenStreamBasicFilter.cpp
192     src/antlr/TokenStreamHiddenTokenFilter.cpp
193     src/antlr/TokenStreamRewriteEngine.cpp
194     src/antlr/TokenStreamSelector.cpp
195     src/antlr/TreeParser.cpp
196     src/brains/BlockSnapshotManager.cpp
197     src/brains/DataStorage.cpp
198     src/brains/MoleculeCreator.cpp
199     src/brains/PairList.cpp
200     src/brains/Register.cpp
201     src/brains/SimSnapshotManager.cpp
202     src/brains/Snapshot.cpp
203     src/brains/Stats.cpp
204     src/constraints/Rattle.cpp
205     src/hydrodynamics/Ellipsoid.cpp
206     src/hydrodynamics/HydroProp.cpp
207     src/hydrodynamics/Sphere.cpp
208     src/integrators/DLM.cpp
209     src/integrators/Integrator.cpp
210     src/integrators/IntegratorFactory.cpp
211     src/integrators/LangevinDynamics.cpp
212     src/integrators/LDForceManager.cpp
213     src/integrators/NgammaT.cpp
214     src/integrators/NPAT.cpp
215     src/integrators/NPrT.cpp
216     src/integrators/NPT.cpp
217     src/integrators/NPTf.cpp
218     src/integrators/NPTi.cpp
219     src/integrators/NPTsz.cpp
220     src/integrators/NPTxyz.cpp
221     src/integrators/NVE.cpp
222     src/integrators/NVT.cpp
223     src/integrators/VelocityVerletIntegrator.cpp
224     src/io/AtomTypesSectionParser.cpp
225     src/io/BaseAtomTypesSectionParser.cpp
226     src/io/BendTypesSectionParser.cpp
227     src/io/BondTypesSectionParser.cpp
228     src/io/ChargeAtomTypesSectionParser.cpp
229     src/io/DirectionalAtomTypesSectionParser.cpp
230     src/io/EAMAtomTypesSectionParser.cpp
231     src/io/ForceFieldOptions.cpp
232     src/io/GayBerneAtomTypesSectionParser.cpp
233     src/io/Globals.cpp
234     src/io/gzstream.cpp
235     src/io/InversionTypesSectionParser.cpp
236     src/io/LennardJonesAtomTypesSectionParser.cpp
237     src/io/MultipoleAtomTypesSectionParser.cpp
238     src/io/NonBondedInteractionsSectionParser.cpp
239     src/io/OptionSectionParser.cpp
240     src/io/ParamConstraint.cpp
241     src/io/SCAtomTypesSectionParser.cpp
242     src/io/SectionParser.cpp
243     src/io/SectionParserManager.cpp
244     src/io/ShapeAtomTypesSectionParser.cpp
245     src/io/StickyAtomTypesSectionParser.cpp
246     src/io/StickyPowerAtomTypesSectionParser.cpp
247     src/io/TorsionTypesSectionParser.cpp
248     src/io/ZConsReader.cpp
249     src/lattice/CubicLattice.cpp
250     src/lattice/FCCLattice.cpp
251     src/lattice/Lattice.cpp
252     src/lattice/LatticeFactory.cpp
253     src/lattice/shapedLattice.cpp
254     src/math/ChebyshevT.cpp
255     src/math/ChebyshevU.cpp
256     src/math/CubicSpline.cpp
257     src/math/LegendrePolynomial.cpp
258     src/math/RealSphericalHarmonic.cpp
259     src/math/RMSD.cpp
260     src/math/SeqRandNumGen.cpp
261     src/math/SphericalHarmonic.cpp
262     src/math/Wigner3jm.cpp
263     src/mdParser/FilenameObserver.cpp
264     src/mdParser/MDLexer.cpp
265     src/mdParser/MDParser.cpp
266     src/mdParser/MDTreeParser.cpp
267     src/minimizers/MinimizerFactory.cpp
268     src/minimizers/MinimizerParameterSet.cpp
269     src/nonbonded/EAM.cpp
270     src/nonbonded/Electrostatic.cpp
271     src/nonbonded/GB.cpp
272     src/nonbonded/InteractionManager.cpp
273     src/nonbonded/LJ.cpp
274     src/nonbonded/MAW.cpp
275     src/nonbonded/Morse.cpp
276     src/nonbonded/RepulsivePower.cpp
277     src/nonbonded/SC.cpp
278     src/nonbonded/Sticky.cpp
279     src/nonbonded/SwitchingFunction.cpp
280     src/primitives/Atom.cpp
281     src/primitives/Bend.cpp
282     src/primitives/DirectionalAtom.cpp
283     src/primitives/GhostBend.cpp
284     src/primitives/GhostTorsion.cpp
285     src/primitives/Inversion.cpp
286     src/primitives/Molecule.cpp
287     src/primitives/RigidBody.cpp
288     src/primitives/StuntDouble.cpp
289     src/primitives/Torsion.cpp
290     src/primitives/UreyBradleyBend.cpp
291     src/restraints/MolecularRestraint.cpp
292     src/restraints/ObjectRestraint.cpp
293     src/selection/DistanceFinder.cpp
294     src/selection/HullFinder.cpp
295     src/selection/IndexFinder.cpp
296     src/selection/NameFinder.cpp
297     src/selection/SelectionCompiler.cpp
298     src/selection/SelectionEvaluator.cpp
299     src/selection/SelectionManager.cpp
300     src/selection/SelectionToken.cpp
301     src/selection/TokenMap.cpp
302     src/types/AtomStamp.cpp
303     src/types/AtomType.cpp
304     src/types/BendStamp.cpp
305     src/types/BondStamp.cpp
306     src/types/CharmmTorsionType.cpp
307     src/types/Component.cpp
308     src/types/CutoffGroupStamp.cpp
309     src/types/DirectionalAtomType.cpp
310     src/types/FragmentStamp.cpp
311     src/types/ImproperCosineInversionType.cpp
312     src/types/InversionStamp.cpp
313     src/types/MoleculeStamp.cpp
314     src/types/NonBondedInteractionType.cpp
315     src/types/RestraintStamp.cpp
316     src/types/RigidBodyStamp.cpp
317     src/types/ShapeAtomType.cpp
318     src/types/TorsionStamp.cpp
319     src/types/ZconsStamp.cpp
320     src/UseTheForce/Amber_FF.cpp
321     src/UseTheForce/CLAYFF.cpp
322     src/UseTheForce/DUFF.cpp
323     src/UseTheForce/EADM_FF.cpp
324     src/UseTheForce/EAM_FF.cpp
325     src/UseTheForce/ForceField.cpp
326     src/UseTheForce/ForceFieldFactory.cpp
327     src/UseTheForce/MnM_FF.cpp
328     src/UseTheForce/SC_FF.cpp
329     src/UseTheForce/SHAPES_FF.cpp
330     src/utils/ElementsTable.cpp
331     src/utils/MoLocator.cpp
332     src/utils/OpenMDBitSet.cpp
333     src/utils/PropertyMap.cpp
334     src/utils/StringTokenizer.cpp
335     src/utils/StringUtils.cpp
336     src/utils/Trim.cpp
337     src/utils/Utility.cpp
338     src/utils/wildcards.cpp
339     src/visitors/AtomNameVisitor.cpp
340     src/visitors/AtomVisitor.cpp
341     src/visitors/CompositeVisitor.cpp
342     src/visitors/LipidTransVisitor.cpp
343     src/visitors/OtherVisitor.cpp
344     src/visitors/ReplacementVisitor.cpp
345     src/visitors/RigidBodyVisitor.cpp
346     src/visitors/ZconsVisitor.cpp
347     )
348 chuckv 1466
349 gezelter 1639 set( PARALLEL_SOURCE
350     src/brains/ForceManager.cpp
351     src/brains/SimCreator.cpp
352     src/brains/SimInfo.cpp
353     src/brains/Thermo.cpp
354     src/constraints/ZconstraintForceManager.cpp
355     src/integrators/RNEMD.cpp
356     src/integrators/Velocitizer.cpp
357     src/io/DumpReader.cpp
358     src/io/DumpWriter.cpp
359     src/io/RestReader.cpp
360     src/io/RestWriter.cpp
361     src/io/StatWriter.cpp
362     src/io/ZConsWriter.cpp
363     src/io/ifstrstream.cpp
364     src/math/ParallelRandNumGen.cpp
365     src/minimizers/CGFamilyMinimizer.cpp
366     src/minimizers/Minimizer.cpp
367     src/minimizers/PRCG.cpp
368     src/minimizers/SDMinimizer.cpp
369     src/parallel/ForceDecomposition.cpp
370     src/parallel/ForceMatrixDecomposition.cpp
371     src/restraints/RestraintForceManager.cpp
372     src/restraints/ThermoIntegrationForceManager.cpp
373     src/utils/ProgressBar.cpp
374 gezelter 1668 src/utils/simError.cpp
375 gezelter 1639 )
376    
377     IF(QHULL_FOUND)
378     set(QHULL_SOURCE
379     src/integrators/LangevinHullDynamics.cpp
380     src/math/Triangle.cpp
381     )
382     set(QHULL_PARALLEL_SOURCE
383     src/integrators/LangevinHullForceManager.cpp
384     src/math/ConvexHull.cpp
385     src/math/AlphaHull.cpp
386     )
387     ENDIF(QHULL_FOUND)
388    
389     add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
390     add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
391    
392     IF(MPI_FOUND)
393     add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
394     set_target_properties(openmd_parallel PROPERTIES
395     COMPILE_DEFINITIONS IS_MPI
396     )
397     ENDIF(MPI_FOUND)
398    
399     add_executable(openmd src/applications/openmd/openmd.cpp)
400     target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
401    
402     if (MPI_FOUND)
403     add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
404     set_target_properties(openmd_MPI PROPERTIES
405     COMPILE_DEFINITIONS IS_MPI
406     )
407     target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
408 gezelter 1647 INSTALL(TARGETS
409     openmd_parallel openmd_MPI
410     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
411     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
412     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
413     )
414 gezelter 1639 ENDIF (MPI_FOUND)
415    
416     set (DUMP2XYZSOURCE
417     src/applications/dump2Xyz/Dump2XYZ.cpp
418 gezelter 1655 src/applications/dump2Xyz/Dump2XYZCmd.cpp
419 gezelter 1639 )
420    
421     set (DYNAMICPROPSSOURCE
422     src/applications/dynamicProps/ActionCorrFunc.cpp
423     src/applications/dynamicProps/CrossTimeCorrFunc.cpp
424     src/applications/dynamicProps/DipoleCorrFunc.cpp
425     src/applications/dynamicProps/DirectionalRCorrFunc.cpp
426     src/applications/dynamicProps/DynamicProps.cpp
427     src/applications/dynamicProps/EnergyCorrFunc.cpp
428     src/applications/dynamicProps/FrameTimeCorrFunc.cpp
429     src/applications/dynamicProps/LegendreCorrFunc.cpp
430     src/applications/dynamicProps/MomentumCorrFunc.cpp
431     src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
432     src/applications/dynamicProps/RadialRCorrFunc.cpp
433     src/applications/dynamicProps/RCorrFunc.cpp
434     src/applications/dynamicProps/StressCorrFunc.cpp
435     src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
436     src/applications/dynamicProps/ThetaCorrFunc.cpp
437     src/applications/dynamicProps/TimeCorrFunc.cpp
438     src/applications/dynamicProps/VCorrFunc.cpp
439 gezelter 1655 src/applications/dynamicProps/DynamicPropsCmd.cpp
440 gezelter 1639 )
441    
442     set (HYDROSOURCE
443     src/applications/hydrodynamics/AnalyticalModel.cpp
444     src/applications/hydrodynamics/ApproximationModel.cpp
445     src/applications/hydrodynamics/BeadModel.cpp
446     src/applications/hydrodynamics/CompositeShape.cpp
447     src/applications/hydrodynamics/Hydro.cpp
448     src/applications/hydrodynamics/HydrodynamicsModel.cpp
449     src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
450     src/applications/hydrodynamics/RoughShell.cpp
451     src/applications/hydrodynamics/ShapeBuilder.cpp
452 gezelter 1655 src/applications/hydrodynamics/HydroCmd.cpp
453 gezelter 1639 )
454    
455     set (STATICPROPSSOURCE
456     src/applications/staticProps/AngleR.cpp
457     src/applications/staticProps/BondAngleDistribution.cpp
458     src/applications/staticProps/BondOrderParameter.cpp
459     src/applications/staticProps/BOPofR.cpp
460     src/applications/staticProps/DensityPlot.cpp
461     src/applications/staticProps/GofAngle2.cpp
462     src/applications/staticProps/GofR.cpp
463     src/applications/staticProps/GofRAngle.cpp
464     src/applications/staticProps/GofRZ.cpp
465     src/applications/staticProps/GofXyz.cpp
466     src/applications/staticProps/GofZ.cpp
467     src/applications/staticProps/Hxy.cpp
468     src/applications/staticProps/NanoLength.cpp
469     src/applications/staticProps/NanoVolume.cpp
470     src/applications/staticProps/ObjectCount.cpp
471     src/applications/staticProps/P2OrderParameter.cpp
472     src/applications/staticProps/pAngle.cpp
473     src/applications/staticProps/RadialDistrFunc.cpp
474     src/applications/staticProps/RhoR.cpp
475     src/applications/staticProps/RhoZ.cpp
476     src/applications/staticProps/RippleOP.cpp
477     src/applications/staticProps/SCDOrderParameter.cpp
478     src/applications/staticProps/StaticProps.cpp
479     src/applications/staticProps/TetrahedralityParam.cpp
480     src/applications/staticProps/TwoDGofR.cpp
481 gezelter 1655 src/applications/staticProps/StaticPropsCmd.cpp
482 gezelter 1639 )
483    
484     set (NANOPARTICLEBUILDERSOURCE
485     src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
486     src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
487 gezelter 1655 src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.cpp
488 gezelter 1639 )
489    
490     set (RANDOMBUILDERSOURCE
491     src/applications/randomBuilder/randomBuilder.cpp
492 gezelter 1655 src/applications/randomBuilder/randomBuilderCmd.cpp
493 gezelter 1639 )
494    
495     set(SIMPLEBUILDERSOURCE
496     src/applications/simpleBuilder/simpleBuilder.cpp
497 gezelter 1655 src/applications/simpleBuilder/simpleBuilderCmd.cpp
498 gezelter 1639 )
499    
500     set(THERMALIZERSOURCE
501     src/applications/thermalizer/thermalizer.cpp
502 gezelter 1655 src/applications/thermalizer/thermalizerCmd.cpp
503 gezelter 1639 )
504    
505     add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
506     target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
507     add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
508     target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
509     add_executable(Hydro ${HYDROSOURCE})
510     target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
511     add_executable(StaticProps ${STATICPROPSSOURCE})
512     target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
513     add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
514     target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
515     add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
516     target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
517     add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
518     target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
519     add_executable(thermalizer ${THERMALIZERSOURCE})
520     target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
521    
522     if (OPENBABEL2_FOUND)
523     set (ATOM2MDSOURCE
524     src/applications/atom2md/atom2md.cpp
525     src/applications/atom2md/openmdformat.cpp
526     )
527     add_executable(atom2md ${ATOM2MDSOURCE})
528     target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
529 gezelter 1647 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
530     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
531 gezelter 1639 ENDIF (OPENBABEL2_FOUND)
532    
533    
534     set(PY_FILES
535     src/applications/hydrodynamics/diffExplainer
536     src/applications/utilities/affineScale
537     src/applications/utilities/dumpConverter
538     src/applications/utilities/md-solvator
539     src/applications/utilities/md2md
540     src/applications/utilities/mdSplit
541     src/applications/utilities/principalAxisCalculator
542     src/applications/utilities/stat2visco
543     src/applications/utilities/waterRotator
544 gezelter 1668 src/applications/utilities/waterReplacer
545 gezelter 1639 )
546    
547     IF(PYTHON_EXECUTABLE)
548     foreach(PY_FILE ${PY_FILES})
549 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
550     CONFIGURE_FILE(${PY_FILE}
551     "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
552     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
553     DESTINATION bin
554     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
555 gezelter 1639 endforeach(PY_FILE)
556     ENDIF(PYTHON_EXECUTABLE)
557    
558     set(PERL_FILES
559     src/applications/utilities/solvator
560     src/applications/utilities/waterBoxer
561     )
562    
563     IF(PERL_FOUND)
564     foreach(PERL_FILE ${PERL_FILES})
565 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
566     configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
567     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
568     DESTINATION bin
569     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
570    
571 gezelter 1639 endforeach(PERL_FILE)
572     ENDIF(PERL_FOUND)
573 gezelter 1647
574 gezelter 1652 INSTALL(FILES AUTHORS LICENSE README INSTALL DESTINATION .
575 gezelter 1647 PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
576     INSTALL(TARGETS
577     openmd_core
578     openmd_single
579     openmd
580     Dump2XYZ
581     simpleBuilder
582     StaticProps
583     DynamicProps
584     randomBuilder
585     nanoparticleBuilder
586     thermalizer
587     Hydro
588     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
589     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
590     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
591     )
592    
593     install(DIRECTORY forceFields/
594     DESTINATION forceFields
595 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
596     PATTERN ".svn" EXCLUDE
597 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
598     install(DIRECTORY samples/
599     DESTINATION samples
600 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
601     PATTERN ".svn" EXCLUDE
602 gezelter 1651 PATTERN "*.dump" EXCLUDE
603     PATTERN "*.stat" EXCLUDE
604 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
605 gezelter 1651 INSTALL(FILES "${CMAKE_CURRENT_SOURCE_DIR}/doc/OpenMDmanual.pdf"
606     DESTINATION doc
607     PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)