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root/OpenMD/branches/development/CMakeLists.txt
Revision: 1655
Committed: Mon Oct 3 20:32:45 2011 UTC (13 years, 7 months ago) by gezelter
Content type: text/plain
File size: 20380 byte(s)
Log Message: 
Replacing most of the C-code with C++ code, and migrating the config.h
file into the PROJECT_BINARY_DIR so that we can have multiple builds
on the same architecture.

File Contents

# User Rev Content
1 chuckv 1466 # Top level cmake script for OpenMD.
2    
3     cmake_minimum_required (VERSION 2.6)
4     project(OpenMD)
5    
6     # OpenMD version number.
7 chuckv 1496 set (VERSION_MAJOR "2")
8     set (VERSION_MINOR "0")
9     set (VERSION_TINY "0")
10 chuckv 1466
11     # cmake modules that are needed to build oopse
12 gezelter 1639 SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 gezelter 1647 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14     SET(CMAKE_INSTALL_PREFIX
15     "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16     )
17     ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18 chuckv 1466
19 gezelter 1647 # ---------- Setup output Directories -------------------------
20     SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21     ${PROJECT_BINARY_DIR}/lib
22     CACHE PATH
23     "Single directory for all shared libraries"
24     )
25     # --------- Setup the Executable output Directory -------------
26     SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27     ${PROJECT_BINARY_DIR}/bin
28     CACHE PATH
29     "Single directory for all Executables."
30     )
31     # --------- Setup the static library directory -------------
32     SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33     ${PROJECT_BINARY_DIR}/lib
34     CACHE PATH
35     "Single directory for all static libraries."
36     )
37    
38    
39 gezelter 1626 enable_language(CXX C)
40 chuckv 1466
41 gezelter 1636 if ( APPLE )
42     set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43     set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44     endif( APPLE )
45     FIND_PACKAGE(MPI)
46     IF ( MPI_FOUND )
47     SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48     INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49     ENDIF()
50    
51     FIND_PACKAGE(Subversion)
52     IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53     Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54     MESSAGE("Current revision is ${Project_WC_REVISION}")
55     Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56     SET(SVN_REV ${Project_WC_REVISION})
57     ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58 gezelter 1652 SET(GENERATELOGS "${PROJECT_SOURCE_DIR}/doc/svn2cl")
59     ADD_CUSTOM_TARGET(ChangeLog
60     COMMAND ${GENERATELOGS} "--group-by-day" "--include-rev"
61     "--linelen=78" "--output=${PROJECT_BINARY_DIR}/ChangeLog" "${PROJECT_SOURCE_DIR}"
62     )
63 gezelter 1636 ENDIF()
64    
65 chuckv 1466 # Optional libraries: If we can find these, we will build with them
66     # Look for OpenBabel libraries
67 chuckv 1496 find_package(OpenBabel2)
68     IF(OPENBABEL2_FOUND)
69     SET(USE_OPENBABEL)
70     include_directories(${OPENBABEL2_INCLUDE_DIR})
71     message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
72     # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
73     ENDIF(OPENBABEL2_FOUND)
74    
75 chuckv 1466 #Look for QHULL Libraries
76     find_package(QHULL)
77 chuckv 1496 IF(QHULL_FOUND)
78     SET(HAVE_QHULL 1)
79 chuckv 1500 include_directories(${QHULL_INCLUDE_DIR})
80 chuckv 1496 LINK_LIBRARIES(${QHULL_LIBRARIES})
81     ENDIF(QHULL_FOUND)
82 chuckv 1466
83 chuckv 1496 # zlib stuff
84     find_package(ZLIB)
85     if(ZLIB_FOUND)
86     SET(HAVE_LIBZ 1)
87     add_definitions(-DHAVE_LIBZ)
88     include_directories(${ZLIB_INCLUDE_DIR})
89     LINK_LIBRARIES(${ZLIB_LIBRARIES})
90     endif(ZLIB_FOUND)
91    
92     #FFTW
93     INCLUDE(${CMAKE_MODULE_PATH}/FindFFTW.cmake)
94     IF(FFTW_FOUND)
95     SET(HAVE_LIBFFTW 1)
96     SET(HAVE_FFTW3_H)
97     INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
98     LINK_LIBRARIES(${FFTW_LIBRARIES})
99     ENDIF(FFTW_FOUND)
100    
101 gezelter 1651 # add a target to generate API documentation with Doxygen
102     find_package(Doxygen)
103     if(DOXYGEN_FOUND)
104     configure_file("${CMAKE_CURRENT_SOURCE_DIR}/doc/Doxyfile.in" "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile" @ONLY)
105     add_custom_target(doc
106     ${DOXYGEN_EXECUTABLE} "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile"
107     WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/doc"
108     COMMENT "Generating API documentation with Doxygen" VERBATIM
109     )
110     endif(DOXYGEN_FOUND)
111 chuckv 1496
112     #include checks
113     include(CheckIncludeFile)
114     CHECK_INCLUDE_FILE(fftw3.h HAVE_FFTW3_H)
115     CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
116     CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
117     CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
118 gezelter 1636 check_include_file(limits.h HAVE_LIMITS_H)
119     check_include_file(stdlib.h HAVE_STDLIB_H)
120     check_include_file(string.h HAVE_STRING_H)
121     check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
122     check_include_file(unistd.h HAVE_UNISTD_H)
123 chuckv 1496
124     #symbol checks
125     include(CheckSymbolExists)
126    
127     #function checks
128     include(CheckFunctionExists)
129 gezelter 1636 check_function_exists(atexit HAVE_ATEXIT)
130 chuckv 1496 check_function_exists(floor HAVE_FLOOR)
131 gezelter 1636 check_function_exists(pow HAVE_POW)
132     check_function_exists(select HAVE_SELECT)
133     check_function_exists(sqrt HAVE_SQRT)
134     check_function_exists(strcasecmp HAVE_STRCASECMP)
135     check_function_exists(strchr HAVE_STRCHR)
136     check_function_exists(strdup HAVE_STRDUP)
137     check_function_exists(strncasecmp HAVE_STRNCASECMP)
138     check_function_exists(strstr HAVE_STRSTR)
139     check_function_exists(strtol HAVE_STRTOL)
140     check_function_exists(strtoull HAVE_STRTOULL)
141     check_function_exists(sysmp HAVE_SYSMP)
142     check_function_exists(table HAVE_TABLE)
143 chuckv 1496
144    
145 gezelter 1639 FIND_PACKAGE(Perl)
146     IF(PERL_FOUND)
147     SET(PERL ${PERL_EXECUTABLE})
148     ELSE(PERL_FOUND)
149     MESSAGE(STATUS "Failed to find perl")
150     ENDIF(PERL_FOUND)
151    
152     FIND_PACKAGE(PythonInterp)
153     IF(PYTHON_EXECUTABLE)
154     SET(PYTHON ${PYTHON_EXECUTABLE})
155     ELSE(PYTHON_EXECUTABLE)
156     MESSAGE(STATUS "Failed to find python")
157     ENDIF(PYTHON_EXECUTABLE)
158    
159     SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
160    
161    
162 chuckv 1496 configure_file (
163     "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
164 gezelter 1655 "${PROJECT_BINARY_DIR}/config.h"
165     )
166     include_directories("${PROJECT_BINARY_DIR}" "${PROJECT_SOURCE_DIR}/src")
167 chuckv 1496
168    
169 chuckv 1466 #Add executables for build
170 gezelter 1639 set (PROGRAMS
171     openmd
172     openmd_MPI
173     Dump2XYZ
174     simpleBuilder
175     StaticProps
176     DynamicProps
177     randomBuilder
178     nanoparticleBuilder
179     thermalizer
180     atom2md
181     Hydro)
182 chuckv 1466
183 gezelter 1639 set(SOURCE
184     src/antlr/ANTLRUtil.cpp
185     src/antlr/ASTFactory.cpp
186     src/antlr/ASTNULLType.cpp
187     src/antlr/ASTRefCount.cpp
188     src/antlr/BaseAST.cpp
189     src/antlr/BitSet.cpp
190     src/antlr/CharBuffer.cpp
191     src/antlr/CharScanner.cpp
192     src/antlr/CommonAST.cpp
193     src/antlr/CommonASTWithHiddenTokens.cpp
194     src/antlr/CommonHiddenStreamToken.cpp
195     src/antlr/CommonToken.cpp
196     src/antlr/InputBuffer.cpp
197     src/antlr/LLkParser.cpp
198     src/antlr/MismatchedCharException.cpp
199     src/antlr/MismatchedTokenException.cpp
200     src/antlr/NoViableAltException.cpp
201     src/antlr/NoViableAltForCharException.cpp
202     src/antlr/Parser.cpp
203     src/antlr/RecognitionException.cpp
204     src/antlr/String.cpp
205     src/antlr/Token.cpp
206     src/antlr/TokenBuffer.cpp
207     src/antlr/TokenRefCount.cpp
208     src/antlr/TokenStreamBasicFilter.cpp
209     src/antlr/TokenStreamHiddenTokenFilter.cpp
210     src/antlr/TokenStreamRewriteEngine.cpp
211     src/antlr/TokenStreamSelector.cpp
212     src/antlr/TreeParser.cpp
213     src/brains/BlockSnapshotManager.cpp
214     src/brains/DataStorage.cpp
215     src/brains/MoleculeCreator.cpp
216     src/brains/PairList.cpp
217     src/brains/Register.cpp
218     src/brains/SimSnapshotManager.cpp
219     src/brains/Snapshot.cpp
220     src/brains/Stats.cpp
221     src/constraints/Rattle.cpp
222     src/hydrodynamics/Ellipsoid.cpp
223     src/hydrodynamics/HydroProp.cpp
224     src/hydrodynamics/Sphere.cpp
225     src/integrators/DLM.cpp
226     src/integrators/Integrator.cpp
227     src/integrators/IntegratorFactory.cpp
228     src/integrators/LangevinDynamics.cpp
229     src/integrators/LDForceManager.cpp
230     src/integrators/NgammaT.cpp
231     src/integrators/NPAT.cpp
232     src/integrators/NPrT.cpp
233     src/integrators/NPT.cpp
234     src/integrators/NPTf.cpp
235     src/integrators/NPTi.cpp
236     src/integrators/NPTsz.cpp
237     src/integrators/NPTxyz.cpp
238     src/integrators/NVE.cpp
239     src/integrators/NVT.cpp
240     src/integrators/VelocityVerletIntegrator.cpp
241     src/io/AtomTypesSectionParser.cpp
242     src/io/BaseAtomTypesSectionParser.cpp
243     src/io/BendTypesSectionParser.cpp
244     src/io/BondTypesSectionParser.cpp
245     src/io/ChargeAtomTypesSectionParser.cpp
246     src/io/DirectionalAtomTypesSectionParser.cpp
247     src/io/EAMAtomTypesSectionParser.cpp
248     src/io/ForceFieldOptions.cpp
249     src/io/GayBerneAtomTypesSectionParser.cpp
250     src/io/Globals.cpp
251     src/io/gzstream.cpp
252     src/io/InversionTypesSectionParser.cpp
253     src/io/LennardJonesAtomTypesSectionParser.cpp
254     src/io/MultipoleAtomTypesSectionParser.cpp
255     src/io/NonBondedInteractionsSectionParser.cpp
256     src/io/OptionSectionParser.cpp
257     src/io/ParamConstraint.cpp
258     src/io/SCAtomTypesSectionParser.cpp
259     src/io/SectionParser.cpp
260     src/io/SectionParserManager.cpp
261     src/io/ShapeAtomTypesSectionParser.cpp
262     src/io/StickyAtomTypesSectionParser.cpp
263     src/io/StickyPowerAtomTypesSectionParser.cpp
264     src/io/TorsionTypesSectionParser.cpp
265     src/io/ZConsReader.cpp
266     src/lattice/CubicLattice.cpp
267     src/lattice/FCCLattice.cpp
268     src/lattice/Lattice.cpp
269     src/lattice/LatticeFactory.cpp
270     src/lattice/shapedLattice.cpp
271     src/math/ChebyshevT.cpp
272     src/math/ChebyshevU.cpp
273     src/math/CubicSpline.cpp
274     src/math/LegendrePolynomial.cpp
275     src/math/RealSphericalHarmonic.cpp
276     src/math/RMSD.cpp
277     src/math/SeqRandNumGen.cpp
278     src/math/SphericalHarmonic.cpp
279     src/math/Wigner3jm.cpp
280     src/mdParser/FilenameObserver.cpp
281     src/mdParser/MDLexer.cpp
282     src/mdParser/MDParser.cpp
283     src/mdParser/MDTreeParser.cpp
284     src/minimizers/MinimizerFactory.cpp
285     src/minimizers/MinimizerParameterSet.cpp
286     src/nonbonded/EAM.cpp
287     src/nonbonded/Electrostatic.cpp
288     src/nonbonded/GB.cpp
289     src/nonbonded/InteractionManager.cpp
290     src/nonbonded/LJ.cpp
291     src/nonbonded/MAW.cpp
292     src/nonbonded/Morse.cpp
293     src/nonbonded/RepulsivePower.cpp
294     src/nonbonded/SC.cpp
295     src/nonbonded/Sticky.cpp
296     src/nonbonded/SwitchingFunction.cpp
297     src/primitives/Atom.cpp
298     src/primitives/Bend.cpp
299     src/primitives/DirectionalAtom.cpp
300     src/primitives/GhostBend.cpp
301     src/primitives/GhostTorsion.cpp
302     src/primitives/Inversion.cpp
303     src/primitives/Molecule.cpp
304     src/primitives/RigidBody.cpp
305     src/primitives/StuntDouble.cpp
306     src/primitives/Torsion.cpp
307     src/primitives/UreyBradleyBend.cpp
308     src/restraints/MolecularRestraint.cpp
309     src/restraints/ObjectRestraint.cpp
310     src/selection/DistanceFinder.cpp
311     src/selection/HullFinder.cpp
312     src/selection/IndexFinder.cpp
313     src/selection/NameFinder.cpp
314     src/selection/SelectionCompiler.cpp
315     src/selection/SelectionEvaluator.cpp
316     src/selection/SelectionManager.cpp
317     src/selection/SelectionToken.cpp
318     src/selection/TokenMap.cpp
319     src/types/AtomStamp.cpp
320     src/types/AtomType.cpp
321     src/types/BendStamp.cpp
322     src/types/BondStamp.cpp
323     src/types/CharmmTorsionType.cpp
324     src/types/Component.cpp
325     src/types/CutoffGroupStamp.cpp
326     src/types/DirectionalAtomType.cpp
327     src/types/FragmentStamp.cpp
328     src/types/ImproperCosineInversionType.cpp
329     src/types/InversionStamp.cpp
330     src/types/MoleculeStamp.cpp
331     src/types/NonBondedInteractionType.cpp
332     src/types/RestraintStamp.cpp
333     src/types/RigidBodyStamp.cpp
334     src/types/ShapeAtomType.cpp
335     src/types/TorsionStamp.cpp
336     src/types/ZconsStamp.cpp
337     src/UseTheForce/Amber_FF.cpp
338     src/UseTheForce/CLAYFF.cpp
339     src/UseTheForce/DUFF.cpp
340     src/UseTheForce/EADM_FF.cpp
341     src/UseTheForce/EAM_FF.cpp
342     src/UseTheForce/ForceField.cpp
343     src/UseTheForce/ForceFieldFactory.cpp
344     src/UseTheForce/MnM_FF.cpp
345     src/UseTheForce/SC_FF.cpp
346     src/UseTheForce/SHAPES_FF.cpp
347     src/utils/ElementsTable.cpp
348     src/utils/MoLocator.cpp
349     src/utils/OpenMDBitSet.cpp
350     src/utils/PropertyMap.cpp
351     src/utils/StringTokenizer.cpp
352     src/utils/StringUtils.cpp
353     src/utils/Trim.cpp
354     src/utils/Utility.cpp
355     src/utils/wildcards.cpp
356     src/visitors/AtomNameVisitor.cpp
357     src/visitors/AtomVisitor.cpp
358     src/visitors/CompositeVisitor.cpp
359     src/visitors/LipidTransVisitor.cpp
360     src/visitors/OtherVisitor.cpp
361     src/visitors/ReplacementVisitor.cpp
362     src/visitors/RigidBodyVisitor.cpp
363     src/visitors/ZconsVisitor.cpp
364     )
365 chuckv 1466
366 gezelter 1639 set( PARALLEL_SOURCE
367     src/brains/ForceManager.cpp
368     src/brains/SimCreator.cpp
369     src/brains/SimInfo.cpp
370     src/brains/Thermo.cpp
371     src/constraints/ZconstraintForceManager.cpp
372     src/integrators/RNEMD.cpp
373     src/integrators/Velocitizer.cpp
374     src/io/DumpReader.cpp
375     src/io/DumpWriter.cpp
376     src/io/RestReader.cpp
377     src/io/RestWriter.cpp
378     src/io/StatWriter.cpp
379     src/io/ZConsWriter.cpp
380     src/io/ifstrstream.cpp
381     src/math/ParallelRandNumGen.cpp
382     src/minimizers/CGFamilyMinimizer.cpp
383     src/minimizers/Minimizer.cpp
384     src/minimizers/PRCG.cpp
385     src/minimizers/SDMinimizer.cpp
386     src/parallel/ForceDecomposition.cpp
387     src/parallel/ForceMatrixDecomposition.cpp
388     src/restraints/RestraintForceManager.cpp
389     src/restraints/ThermoIntegrationForceManager.cpp
390     src/utils/ProgressBar.cpp
391     src/utils/simError.c
392     )
393    
394     IF(QHULL_FOUND)
395     set(QHULL_SOURCE
396     src/integrators/LangevinHullDynamics.cpp
397     src/math/Triangle.cpp
398     )
399     set(QHULL_PARALLEL_SOURCE
400     src/integrators/LangevinHullForceManager.cpp
401     src/math/ConvexHull.cpp
402     src/math/AlphaHull.cpp
403     )
404     ENDIF(QHULL_FOUND)
405    
406     add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
407     add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
408    
409     IF(MPI_FOUND)
410     add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
411     set_target_properties(openmd_parallel PROPERTIES
412     COMPILE_DEFINITIONS IS_MPI
413     )
414     ENDIF(MPI_FOUND)
415    
416     add_executable(openmd src/applications/openmd/openmd.cpp)
417     target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
418    
419     if (MPI_FOUND)
420     add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
421     set_target_properties(openmd_MPI PROPERTIES
422     COMPILE_DEFINITIONS IS_MPI
423     )
424     target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
425 gezelter 1647 INSTALL(TARGETS
426     openmd_parallel openmd_MPI
427     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
428     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
429     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
430     )
431 gezelter 1639 ENDIF (MPI_FOUND)
432    
433     set (DUMP2XYZSOURCE
434     src/applications/dump2Xyz/Dump2XYZ.cpp
435 gezelter 1655 src/applications/dump2Xyz/Dump2XYZCmd.cpp
436 gezelter 1639 )
437    
438     set (DYNAMICPROPSSOURCE
439     src/applications/dynamicProps/ActionCorrFunc.cpp
440     src/applications/dynamicProps/CrossTimeCorrFunc.cpp
441     src/applications/dynamicProps/DipoleCorrFunc.cpp
442     src/applications/dynamicProps/DirectionalRCorrFunc.cpp
443     src/applications/dynamicProps/DynamicProps.cpp
444     src/applications/dynamicProps/EnergyCorrFunc.cpp
445     src/applications/dynamicProps/FrameTimeCorrFunc.cpp
446     src/applications/dynamicProps/LegendreCorrFunc.cpp
447     src/applications/dynamicProps/MomentumCorrFunc.cpp
448     src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
449     src/applications/dynamicProps/RadialRCorrFunc.cpp
450     src/applications/dynamicProps/RCorrFunc.cpp
451     src/applications/dynamicProps/StressCorrFunc.cpp
452     src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
453     src/applications/dynamicProps/ThetaCorrFunc.cpp
454     src/applications/dynamicProps/TimeCorrFunc.cpp
455     src/applications/dynamicProps/VCorrFunc.cpp
456 gezelter 1655 src/applications/dynamicProps/DynamicPropsCmd.cpp
457 gezelter 1639 )
458    
459     set (HYDROSOURCE
460     src/applications/hydrodynamics/AnalyticalModel.cpp
461     src/applications/hydrodynamics/ApproximationModel.cpp
462     src/applications/hydrodynamics/BeadModel.cpp
463     src/applications/hydrodynamics/CompositeShape.cpp
464     src/applications/hydrodynamics/Hydro.cpp
465     src/applications/hydrodynamics/HydrodynamicsModel.cpp
466     src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
467     src/applications/hydrodynamics/RoughShell.cpp
468     src/applications/hydrodynamics/ShapeBuilder.cpp
469 gezelter 1655 src/applications/hydrodynamics/HydroCmd.cpp
470 gezelter 1639 )
471    
472     set (STATICPROPSSOURCE
473     src/applications/staticProps/AngleR.cpp
474     src/applications/staticProps/BondAngleDistribution.cpp
475     src/applications/staticProps/BondOrderParameter.cpp
476     src/applications/staticProps/BOPofR.cpp
477     src/applications/staticProps/DensityPlot.cpp
478     src/applications/staticProps/GofAngle2.cpp
479     src/applications/staticProps/GofR.cpp
480     src/applications/staticProps/GofRAngle.cpp
481     src/applications/staticProps/GofRZ.cpp
482     src/applications/staticProps/GofXyz.cpp
483     src/applications/staticProps/GofZ.cpp
484     src/applications/staticProps/Hxy.cpp
485     src/applications/staticProps/NanoLength.cpp
486     src/applications/staticProps/NanoVolume.cpp
487     src/applications/staticProps/ObjectCount.cpp
488     src/applications/staticProps/P2OrderParameter.cpp
489     src/applications/staticProps/pAngle.cpp
490     src/applications/staticProps/RadialDistrFunc.cpp
491     src/applications/staticProps/RhoR.cpp
492     src/applications/staticProps/RhoZ.cpp
493     src/applications/staticProps/RippleOP.cpp
494     src/applications/staticProps/SCDOrderParameter.cpp
495     src/applications/staticProps/StaticProps.cpp
496     src/applications/staticProps/TetrahedralityParam.cpp
497     src/applications/staticProps/TwoDGofR.cpp
498 gezelter 1655 src/applications/staticProps/StaticPropsCmd.cpp
499 gezelter 1639 )
500    
501     set (NANOPARTICLEBUILDERSOURCE
502     src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
503     src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
504 gezelter 1655 src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.cpp
505 gezelter 1639 )
506    
507     set (RANDOMBUILDERSOURCE
508     src/applications/randomBuilder/randomBuilder.cpp
509 gezelter 1655 src/applications/randomBuilder/randomBuilderCmd.cpp
510 gezelter 1639 )
511    
512     set(SIMPLEBUILDERSOURCE
513     src/applications/simpleBuilder/simpleBuilder.cpp
514 gezelter 1655 src/applications/simpleBuilder/simpleBuilderCmd.cpp
515 gezelter 1639 )
516    
517     set(THERMALIZERSOURCE
518     src/applications/thermalizer/thermalizer.cpp
519 gezelter 1655 src/applications/thermalizer/thermalizerCmd.cpp
520 gezelter 1639 )
521    
522     add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
523     target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
524     add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
525     target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
526     add_executable(Hydro ${HYDROSOURCE})
527     target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
528     add_executable(StaticProps ${STATICPROPSSOURCE})
529     target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
530     add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
531     target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
532     add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
533     target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
534     add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
535     target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
536     add_executable(thermalizer ${THERMALIZERSOURCE})
537     target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
538    
539     if (OPENBABEL2_FOUND)
540     set (ATOM2MDSOURCE
541     src/applications/atom2md/atom2md.cpp
542     src/applications/atom2md/openmdformat.cpp
543     )
544     add_executable(atom2md ${ATOM2MDSOURCE})
545     target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
546 gezelter 1647 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
547     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
548 gezelter 1639 ENDIF (OPENBABEL2_FOUND)
549    
550    
551     set(PY_FILES
552     src/applications/hydrodynamics/diffExplainer
553     src/applications/utilities/affineScale
554     src/applications/utilities/dumpConverter
555     src/applications/utilities/md-solvator
556     src/applications/utilities/md2md
557     src/applications/utilities/mdSplit
558     src/applications/utilities/principalAxisCalculator
559     src/applications/utilities/stat2visco
560     src/applications/utilities/waterRotator
561     )
562    
563     IF(PYTHON_EXECUTABLE)
564     foreach(PY_FILE ${PY_FILES})
565 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
566     CONFIGURE_FILE(${PY_FILE}
567     "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
568     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
569     DESTINATION bin
570     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
571 gezelter 1639 endforeach(PY_FILE)
572     ENDIF(PYTHON_EXECUTABLE)
573    
574     set(PERL_FILES
575     src/applications/utilities/solvator
576     src/applications/utilities/waterBoxer
577     )
578    
579     IF(PERL_FOUND)
580     foreach(PERL_FILE ${PERL_FILES})
581 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
582     configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
583     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
584     DESTINATION bin
585     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
586    
587 gezelter 1639 endforeach(PERL_FILE)
588     ENDIF(PERL_FOUND)
589 gezelter 1647
590 gezelter 1652 INSTALL(FILES AUTHORS LICENSE README INSTALL DESTINATION .
591 gezelter 1647 PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
592     INSTALL(TARGETS
593     openmd_core
594     openmd_single
595     openmd
596     Dump2XYZ
597     simpleBuilder
598     StaticProps
599     DynamicProps
600     randomBuilder
601     nanoparticleBuilder
602     thermalizer
603     Hydro
604     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
605     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
606     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
607     )
608    
609     install(DIRECTORY forceFields/
610     DESTINATION forceFields
611 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
612     PATTERN ".svn" EXCLUDE
613 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
614     install(DIRECTORY samples/
615     DESTINATION samples
616 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
617     PATTERN ".svn" EXCLUDE
618 gezelter 1651 PATTERN "*.dump" EXCLUDE
619     PATTERN "*.stat" EXCLUDE
620 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
621 gezelter 1651 INSTALL(FILES "${CMAKE_CURRENT_SOURCE_DIR}/doc/OpenMDmanual.pdf"
622     DESTINATION doc
623     PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)