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root/OpenMD/branches/development/CMakeLists.txt
Revision: 1652
Committed: Tue Sep 27 18:18:28 2011 UTC (13 years, 8 months ago) by gezelter
Content type: text/plain
File size: 20441 byte(s)
Log Message: 
added an INSTALL file, using svn2cl to get the ChangeLog target

File Contents

# User Rev Content
1 chuckv 1466 # Top level cmake script for OpenMD.
2    
3     cmake_minimum_required (VERSION 2.6)
4     project(OpenMD)
5    
6     # OpenMD version number.
7 chuckv 1496 set (VERSION_MAJOR "2")
8     set (VERSION_MINOR "0")
9     set (VERSION_TINY "0")
10 chuckv 1466
11     # cmake modules that are needed to build oopse
12 gezelter 1639 SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 gezelter 1647 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14     SET(CMAKE_INSTALL_PREFIX
15     "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16     )
17     ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18 chuckv 1466
19 gezelter 1647 # ---------- Setup output Directories -------------------------
20     SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21     ${PROJECT_BINARY_DIR}/lib
22     CACHE PATH
23     "Single directory for all shared libraries"
24     )
25     # --------- Setup the Executable output Directory -------------
26     SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27     ${PROJECT_BINARY_DIR}/bin
28     CACHE PATH
29     "Single directory for all Executables."
30     )
31     # --------- Setup the static library directory -------------
32     SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33     ${PROJECT_BINARY_DIR}/lib
34     CACHE PATH
35     "Single directory for all static libraries."
36     )
37    
38    
39 gezelter 1626 enable_language(CXX C)
40 chuckv 1466
41 gezelter 1636 if ( APPLE )
42     set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43     set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44     endif( APPLE )
45     FIND_PACKAGE(MPI)
46     IF ( MPI_FOUND )
47     SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48     INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49     ENDIF()
50    
51     FIND_PACKAGE(Subversion)
52     IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53     Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54     MESSAGE("Current revision is ${Project_WC_REVISION}")
55     Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56     SET(SVN_REV ${Project_WC_REVISION})
57     ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58 gezelter 1652 SET(GENERATELOGS "${PROJECT_SOURCE_DIR}/doc/svn2cl")
59     ADD_CUSTOM_TARGET(ChangeLog
60     COMMAND ${GENERATELOGS} "--group-by-day" "--include-rev"
61     "--linelen=78" "--output=${PROJECT_BINARY_DIR}/ChangeLog" "${PROJECT_SOURCE_DIR}"
62     )
63 gezelter 1636 ENDIF()
64    
65 chuckv 1466 # Optional libraries: If we can find these, we will build with them
66     # Look for OpenBabel libraries
67 chuckv 1496 find_package(OpenBabel2)
68     IF(OPENBABEL2_FOUND)
69     SET(USE_OPENBABEL)
70     include_directories(${OPENBABEL2_INCLUDE_DIR})
71     message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
72     # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
73     ENDIF(OPENBABEL2_FOUND)
74    
75 chuckv 1466 #Look for QHULL Libraries
76     find_package(QHULL)
77 chuckv 1496 IF(QHULL_FOUND)
78     SET(HAVE_QHULL 1)
79 chuckv 1500 include_directories(${QHULL_INCLUDE_DIR})
80 chuckv 1496 LINK_LIBRARIES(${QHULL_LIBRARIES})
81     ENDIF(QHULL_FOUND)
82 chuckv 1466
83 chuckv 1496 # zlib stuff
84     find_package(ZLIB)
85     if(ZLIB_FOUND)
86     SET(HAVE_LIBZ 1)
87     add_definitions(-DHAVE_LIBZ)
88     include_directories(${ZLIB_INCLUDE_DIR})
89     LINK_LIBRARIES(${ZLIB_LIBRARIES})
90     endif(ZLIB_FOUND)
91    
92     #FFTW
93     INCLUDE(${CMAKE_MODULE_PATH}/FindFFTW.cmake)
94     IF(FFTW_FOUND)
95     SET(HAVE_LIBFFTW 1)
96     SET(HAVE_FFTW3_H)
97     INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
98     LINK_LIBRARIES(${FFTW_LIBRARIES})
99     ENDIF(FFTW_FOUND)
100    
101 gezelter 1651 # add a target to generate API documentation with Doxygen
102     find_package(Doxygen)
103     if(DOXYGEN_FOUND)
104     configure_file("${CMAKE_CURRENT_SOURCE_DIR}/doc/Doxyfile.in" "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile" @ONLY)
105     add_custom_target(doc
106     ${DOXYGEN_EXECUTABLE} "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile"
107     WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/doc"
108     COMMENT "Generating API documentation with Doxygen" VERBATIM
109     )
110     endif(DOXYGEN_FOUND)
111 chuckv 1496
112     #include checks
113     include(CheckIncludeFile)
114     CHECK_INCLUDE_FILE(fftw3.h HAVE_FFTW3_H)
115     CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
116     CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
117     CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
118 gezelter 1636 check_include_file(limits.h HAVE_LIMITS_H)
119     check_include_file(stdlib.h HAVE_STDLIB_H)
120     check_include_file(string.h HAVE_STRING_H)
121     check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
122     check_include_file(unistd.h HAVE_UNISTD_H)
123 chuckv 1496
124     #symbol checks
125     include(CheckSymbolExists)
126    
127     #function checks
128     include(CheckFunctionExists)
129 gezelter 1636 check_function_exists(atexit HAVE_ATEXIT)
130 chuckv 1496 check_function_exists(floor HAVE_FLOOR)
131 gezelter 1636 check_function_exists(pow HAVE_POW)
132     check_function_exists(select HAVE_SELECT)
133     check_function_exists(sqrt HAVE_SQRT)
134     check_function_exists(strcasecmp HAVE_STRCASECMP)
135     check_function_exists(strchr HAVE_STRCHR)
136     check_function_exists(strdup HAVE_STRDUP)
137     check_function_exists(strncasecmp HAVE_STRNCASECMP)
138     check_function_exists(strstr HAVE_STRSTR)
139     check_function_exists(strtol HAVE_STRTOL)
140     check_function_exists(strtoull HAVE_STRTOULL)
141     check_function_exists(sysmp HAVE_SYSMP)
142     check_function_exists(table HAVE_TABLE)
143 chuckv 1496
144    
145 gezelter 1639 FIND_PACKAGE(Perl)
146     IF(PERL_FOUND)
147     SET(PERL ${PERL_EXECUTABLE})
148     ELSE(PERL_FOUND)
149     MESSAGE(STATUS "Failed to find perl")
150     ENDIF(PERL_FOUND)
151    
152     FIND_PACKAGE(PythonInterp)
153     IF(PYTHON_EXECUTABLE)
154     SET(PYTHON ${PYTHON_EXECUTABLE})
155     ELSE(PYTHON_EXECUTABLE)
156     MESSAGE(STATUS "Failed to find python")
157     ENDIF(PYTHON_EXECUTABLE)
158    
159     SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
160    
161    
162 chuckv 1496 configure_file (
163     "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
164     "${PROJECT_SOURCE_DIR}/src/config.h"
165     )
166     include_directories (${PROJECT_SOURCE_DIR}/src)
167    
168     #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h)
169    
170    
171 chuckv 1466 #Add executables for build
172 gezelter 1639 set (PROGRAMS
173     openmd
174     openmd_MPI
175     Dump2XYZ
176     simpleBuilder
177     StaticProps
178     DynamicProps
179     randomBuilder
180     nanoparticleBuilder
181     thermalizer
182     atom2md
183     Hydro)
184 chuckv 1466
185 gezelter 1639 set(SOURCE
186     src/antlr/ANTLRUtil.cpp
187     src/antlr/ASTFactory.cpp
188     src/antlr/ASTNULLType.cpp
189     src/antlr/ASTRefCount.cpp
190     src/antlr/BaseAST.cpp
191     src/antlr/BitSet.cpp
192     src/antlr/CharBuffer.cpp
193     src/antlr/CharScanner.cpp
194     src/antlr/CommonAST.cpp
195     src/antlr/CommonASTWithHiddenTokens.cpp
196     src/antlr/CommonHiddenStreamToken.cpp
197     src/antlr/CommonToken.cpp
198     src/antlr/InputBuffer.cpp
199     src/antlr/LLkParser.cpp
200     src/antlr/MismatchedCharException.cpp
201     src/antlr/MismatchedTokenException.cpp
202     src/antlr/NoViableAltException.cpp
203     src/antlr/NoViableAltForCharException.cpp
204     src/antlr/Parser.cpp
205     src/antlr/RecognitionException.cpp
206     src/antlr/String.cpp
207     src/antlr/Token.cpp
208     src/antlr/TokenBuffer.cpp
209     src/antlr/TokenRefCount.cpp
210     src/antlr/TokenStreamBasicFilter.cpp
211     src/antlr/TokenStreamHiddenTokenFilter.cpp
212     src/antlr/TokenStreamRewriteEngine.cpp
213     src/antlr/TokenStreamSelector.cpp
214     src/antlr/TreeParser.cpp
215     src/brains/BlockSnapshotManager.cpp
216     src/brains/DataStorage.cpp
217     src/brains/MoleculeCreator.cpp
218     src/brains/PairList.cpp
219     src/brains/Register.cpp
220     src/brains/SimSnapshotManager.cpp
221     src/brains/Snapshot.cpp
222     src/brains/Stats.cpp
223     src/constraints/Rattle.cpp
224     src/hydrodynamics/Ellipsoid.cpp
225     src/hydrodynamics/HydroProp.cpp
226     src/hydrodynamics/Sphere.cpp
227     src/integrators/DLM.cpp
228     src/integrators/Integrator.cpp
229     src/integrators/IntegratorFactory.cpp
230     src/integrators/LangevinDynamics.cpp
231     src/integrators/LDForceManager.cpp
232     src/integrators/NgammaT.cpp
233     src/integrators/NPAT.cpp
234     src/integrators/NPrT.cpp
235     src/integrators/NPT.cpp
236     src/integrators/NPTf.cpp
237     src/integrators/NPTi.cpp
238     src/integrators/NPTsz.cpp
239     src/integrators/NPTxyz.cpp
240     src/integrators/NVE.cpp
241     src/integrators/NVT.cpp
242     src/integrators/VelocityVerletIntegrator.cpp
243     src/io/AtomTypesSectionParser.cpp
244     src/io/BaseAtomTypesSectionParser.cpp
245     src/io/BendTypesSectionParser.cpp
246     src/io/BondTypesSectionParser.cpp
247     src/io/ChargeAtomTypesSectionParser.cpp
248     src/io/DirectionalAtomTypesSectionParser.cpp
249     src/io/EAMAtomTypesSectionParser.cpp
250     src/io/ForceFieldOptions.cpp
251     src/io/GayBerneAtomTypesSectionParser.cpp
252     src/io/Globals.cpp
253     src/io/gzstream.cpp
254     src/io/InversionTypesSectionParser.cpp
255     src/io/LennardJonesAtomTypesSectionParser.cpp
256     src/io/MultipoleAtomTypesSectionParser.cpp
257     src/io/NonBondedInteractionsSectionParser.cpp
258     src/io/OptionSectionParser.cpp
259     src/io/ParamConstraint.cpp
260     src/io/SCAtomTypesSectionParser.cpp
261     src/io/SectionParser.cpp
262     src/io/SectionParserManager.cpp
263     src/io/ShapeAtomTypesSectionParser.cpp
264     src/io/StickyAtomTypesSectionParser.cpp
265     src/io/StickyPowerAtomTypesSectionParser.cpp
266     src/io/TorsionTypesSectionParser.cpp
267     src/io/ZConsReader.cpp
268     src/lattice/CubicLattice.cpp
269     src/lattice/FCCLattice.cpp
270     src/lattice/Lattice.cpp
271     src/lattice/LatticeFactory.cpp
272     src/lattice/shapedLattice.cpp
273     src/math/ChebyshevT.cpp
274     src/math/ChebyshevU.cpp
275     src/math/CubicSpline.cpp
276     src/math/LegendrePolynomial.cpp
277     src/math/RealSphericalHarmonic.cpp
278     src/math/RMSD.cpp
279     src/math/SeqRandNumGen.cpp
280     src/math/SphericalHarmonic.cpp
281     src/math/Wigner3jm.cpp
282     src/mdParser/FilenameObserver.cpp
283     src/mdParser/MDLexer.cpp
284     src/mdParser/MDParser.cpp
285     src/mdParser/MDTreeParser.cpp
286     src/minimizers/MinimizerFactory.cpp
287     src/minimizers/MinimizerParameterSet.cpp
288     src/nonbonded/EAM.cpp
289     src/nonbonded/Electrostatic.cpp
290     src/nonbonded/GB.cpp
291     src/nonbonded/InteractionManager.cpp
292     src/nonbonded/LJ.cpp
293     src/nonbonded/MAW.cpp
294     src/nonbonded/Morse.cpp
295     src/nonbonded/RepulsivePower.cpp
296     src/nonbonded/SC.cpp
297     src/nonbonded/Sticky.cpp
298     src/nonbonded/SwitchingFunction.cpp
299     src/primitives/Atom.cpp
300     src/primitives/Bend.cpp
301     src/primitives/DirectionalAtom.cpp
302     src/primitives/GhostBend.cpp
303     src/primitives/GhostTorsion.cpp
304     src/primitives/Inversion.cpp
305     src/primitives/Molecule.cpp
306     src/primitives/RigidBody.cpp
307     src/primitives/StuntDouble.cpp
308     src/primitives/Torsion.cpp
309     src/primitives/UreyBradleyBend.cpp
310     src/restraints/MolecularRestraint.cpp
311     src/restraints/ObjectRestraint.cpp
312     src/selection/DistanceFinder.cpp
313     src/selection/HullFinder.cpp
314     src/selection/IndexFinder.cpp
315     src/selection/NameFinder.cpp
316     src/selection/SelectionCompiler.cpp
317     src/selection/SelectionEvaluator.cpp
318     src/selection/SelectionManager.cpp
319     src/selection/SelectionToken.cpp
320     src/selection/TokenMap.cpp
321     src/types/AtomStamp.cpp
322     src/types/AtomType.cpp
323     src/types/BendStamp.cpp
324     src/types/BondStamp.cpp
325     src/types/CharmmTorsionType.cpp
326     src/types/Component.cpp
327     src/types/CutoffGroupStamp.cpp
328     src/types/DirectionalAtomType.cpp
329     src/types/FragmentStamp.cpp
330     src/types/ImproperCosineInversionType.cpp
331     src/types/InversionStamp.cpp
332     src/types/MoleculeStamp.cpp
333     src/types/NonBondedInteractionType.cpp
334     src/types/RestraintStamp.cpp
335     src/types/RigidBodyStamp.cpp
336     src/types/ShapeAtomType.cpp
337     src/types/TorsionStamp.cpp
338     src/types/ZconsStamp.cpp
339     src/UseTheForce/Amber_FF.cpp
340     src/UseTheForce/CLAYFF.cpp
341     src/UseTheForce/DUFF.cpp
342     src/UseTheForce/EADM_FF.cpp
343     src/UseTheForce/EAM_FF.cpp
344     src/UseTheForce/ForceField.cpp
345     src/UseTheForce/ForceFieldFactory.cpp
346     src/UseTheForce/MnM_FF.cpp
347     src/UseTheForce/SC_FF.cpp
348     src/UseTheForce/SHAPES_FF.cpp
349     src/utils/ElementsTable.cpp
350     src/utils/MoLocator.cpp
351     src/utils/OpenMDBitSet.cpp
352     src/utils/PropertyMap.cpp
353     src/utils/StringTokenizer.cpp
354     src/utils/StringUtils.cpp
355     src/utils/Trim.cpp
356     src/utils/Utility.cpp
357     src/utils/wildcards.cpp
358     src/visitors/AtomNameVisitor.cpp
359     src/visitors/AtomVisitor.cpp
360     src/visitors/CompositeVisitor.cpp
361     src/visitors/LipidTransVisitor.cpp
362     src/visitors/OtherVisitor.cpp
363     src/visitors/ReplacementVisitor.cpp
364     src/visitors/RigidBodyVisitor.cpp
365     src/visitors/ZconsVisitor.cpp
366     )
367 chuckv 1466
368 gezelter 1639 set( PARALLEL_SOURCE
369     src/brains/ForceManager.cpp
370     src/brains/SimCreator.cpp
371     src/brains/SimInfo.cpp
372     src/brains/Thermo.cpp
373     src/constraints/ZconstraintForceManager.cpp
374     src/integrators/RNEMD.cpp
375     src/integrators/Velocitizer.cpp
376     src/io/DumpReader.cpp
377     src/io/DumpWriter.cpp
378     src/io/RestReader.cpp
379     src/io/RestWriter.cpp
380     src/io/StatWriter.cpp
381     src/io/ZConsWriter.cpp
382     src/io/ifstrstream.cpp
383     src/math/ParallelRandNumGen.cpp
384     src/minimizers/CGFamilyMinimizer.cpp
385     src/minimizers/Minimizer.cpp
386     src/minimizers/PRCG.cpp
387     src/minimizers/SDMinimizer.cpp
388     src/parallel/ForceDecomposition.cpp
389     src/parallel/ForceMatrixDecomposition.cpp
390     src/restraints/RestraintForceManager.cpp
391     src/restraints/ThermoIntegrationForceManager.cpp
392     src/utils/ProgressBar.cpp
393     src/utils/simError.c
394     )
395    
396     IF(QHULL_FOUND)
397     set(QHULL_SOURCE
398     src/integrators/LangevinHullDynamics.cpp
399     src/math/Triangle.cpp
400     )
401     set(QHULL_PARALLEL_SOURCE
402     src/integrators/LangevinHullForceManager.cpp
403     src/math/ConvexHull.cpp
404     src/math/AlphaHull.cpp
405     )
406     ENDIF(QHULL_FOUND)
407    
408     add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
409     add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
410    
411     IF(MPI_FOUND)
412     add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
413     set_target_properties(openmd_parallel PROPERTIES
414     COMPILE_DEFINITIONS IS_MPI
415     )
416     ENDIF(MPI_FOUND)
417    
418     add_executable(openmd src/applications/openmd/openmd.cpp)
419     target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
420    
421     if (MPI_FOUND)
422     add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
423     set_target_properties(openmd_MPI PROPERTIES
424     COMPILE_DEFINITIONS IS_MPI
425     )
426     target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
427 gezelter 1647 INSTALL(TARGETS
428     openmd_parallel openmd_MPI
429     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
430     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
431     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
432     )
433 gezelter 1639 ENDIF (MPI_FOUND)
434    
435     set (DUMP2XYZSOURCE
436     src/applications/dump2Xyz/Dump2XYZ.cpp
437     src/applications/dump2Xyz/Dump2XYZCmd.c
438     )
439    
440     set (DYNAMICPROPSSOURCE
441     src/applications/dynamicProps/ActionCorrFunc.cpp
442     src/applications/dynamicProps/CrossTimeCorrFunc.cpp
443     src/applications/dynamicProps/DipoleCorrFunc.cpp
444     src/applications/dynamicProps/DirectionalRCorrFunc.cpp
445     src/applications/dynamicProps/DynamicProps.cpp
446     src/applications/dynamicProps/EnergyCorrFunc.cpp
447     src/applications/dynamicProps/FrameTimeCorrFunc.cpp
448     src/applications/dynamicProps/LegendreCorrFunc.cpp
449     src/applications/dynamicProps/MomentumCorrFunc.cpp
450     src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
451     src/applications/dynamicProps/RadialRCorrFunc.cpp
452     src/applications/dynamicProps/RCorrFunc.cpp
453     src/applications/dynamicProps/StressCorrFunc.cpp
454     src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
455     src/applications/dynamicProps/ThetaCorrFunc.cpp
456     src/applications/dynamicProps/TimeCorrFunc.cpp
457     src/applications/dynamicProps/VCorrFunc.cpp
458     src/applications/dynamicProps/DynamicPropsCmd.c
459     )
460    
461     set (HYDROSOURCE
462     src/applications/hydrodynamics/AnalyticalModel.cpp
463     src/applications/hydrodynamics/ApproximationModel.cpp
464     src/applications/hydrodynamics/BeadModel.cpp
465     src/applications/hydrodynamics/CompositeShape.cpp
466     src/applications/hydrodynamics/Hydro.cpp
467     src/applications/hydrodynamics/HydrodynamicsModel.cpp
468     src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
469     src/applications/hydrodynamics/RoughShell.cpp
470     src/applications/hydrodynamics/ShapeBuilder.cpp
471     src/applications/hydrodynamics/HydroCmd.c
472     )
473    
474     set (STATICPROPSSOURCE
475     src/applications/staticProps/AngleR.cpp
476     src/applications/staticProps/BondAngleDistribution.cpp
477     src/applications/staticProps/BondOrderParameter.cpp
478     src/applications/staticProps/BOPofR.cpp
479     src/applications/staticProps/DensityPlot.cpp
480     src/applications/staticProps/GofAngle2.cpp
481     src/applications/staticProps/GofR.cpp
482     src/applications/staticProps/GofRAngle.cpp
483     src/applications/staticProps/GofRZ.cpp
484     src/applications/staticProps/GofXyz.cpp
485     src/applications/staticProps/GofZ.cpp
486     src/applications/staticProps/Hxy.cpp
487     src/applications/staticProps/NanoLength.cpp
488     src/applications/staticProps/NanoVolume.cpp
489     src/applications/staticProps/ObjectCount.cpp
490     src/applications/staticProps/P2OrderParameter.cpp
491     src/applications/staticProps/pAngle.cpp
492     src/applications/staticProps/RadialDistrFunc.cpp
493     src/applications/staticProps/RhoR.cpp
494     src/applications/staticProps/RhoZ.cpp
495     src/applications/staticProps/RippleOP.cpp
496     src/applications/staticProps/SCDOrderParameter.cpp
497     src/applications/staticProps/StaticProps.cpp
498     src/applications/staticProps/TetrahedralityParam.cpp
499     src/applications/staticProps/TwoDGofR.cpp
500     src/applications/staticProps/StaticPropsCmd.c
501     )
502    
503     set (NANOPARTICLEBUILDERSOURCE
504     src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
505     src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
506     src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.c
507     )
508    
509     set (RANDOMBUILDERSOURCE
510     src/applications/randomBuilder/randomBuilder.cpp
511     src/applications/randomBuilder/randomBuilderCmd.c
512     )
513    
514     set(SIMPLEBUILDERSOURCE
515     src/applications/simpleBuilder/simpleBuilder.cpp
516     src/applications/simpleBuilder/simpleBuilderCmd.c
517     )
518    
519     set(THERMALIZERSOURCE
520     src/applications/thermalizer/thermalizer.cpp
521     src/applications/thermalizer/thermalizerCmd.c
522     )
523    
524     add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
525     target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
526     add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
527     target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
528     add_executable(Hydro ${HYDROSOURCE})
529     target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
530     add_executable(StaticProps ${STATICPROPSSOURCE})
531     target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
532     add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
533     target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
534     add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
535     target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
536     add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
537     target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
538     add_executable(thermalizer ${THERMALIZERSOURCE})
539     target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
540    
541     if (OPENBABEL2_FOUND)
542     set (ATOM2MDSOURCE
543     src/applications/atom2md/atom2md.cpp
544     src/applications/atom2md/openmdformat.cpp
545     )
546     add_executable(atom2md ${ATOM2MDSOURCE})
547     target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
548 gezelter 1647 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
549     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
550 gezelter 1639 ENDIF (OPENBABEL2_FOUND)
551    
552    
553     set(PY_FILES
554     src/applications/hydrodynamics/diffExplainer
555     src/applications/utilities/affineScale
556     src/applications/utilities/dumpConverter
557     src/applications/utilities/md-solvator
558     src/applications/utilities/md2md
559     src/applications/utilities/mdSplit
560     src/applications/utilities/principalAxisCalculator
561     src/applications/utilities/stat2visco
562     src/applications/utilities/waterRotator
563     )
564    
565     IF(PYTHON_EXECUTABLE)
566     foreach(PY_FILE ${PY_FILES})
567 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
568     CONFIGURE_FILE(${PY_FILE}
569     "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
570     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
571     DESTINATION bin
572     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
573 gezelter 1639 endforeach(PY_FILE)
574     ENDIF(PYTHON_EXECUTABLE)
575    
576     set(PERL_FILES
577     src/applications/utilities/solvator
578     src/applications/utilities/waterBoxer
579     )
580    
581     IF(PERL_FOUND)
582     foreach(PERL_FILE ${PERL_FILES})
583 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
584     configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
585     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
586     DESTINATION bin
587     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
588    
589 gezelter 1639 endforeach(PERL_FILE)
590     ENDIF(PERL_FOUND)
591 gezelter 1647
592 gezelter 1652 INSTALL(FILES AUTHORS LICENSE README INSTALL DESTINATION .
593 gezelter 1647 PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
594     INSTALL(TARGETS
595     openmd_core
596     openmd_single
597     openmd
598     Dump2XYZ
599     simpleBuilder
600     StaticProps
601     DynamicProps
602     randomBuilder
603     nanoparticleBuilder
604     thermalizer
605     Hydro
606     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
607     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
608     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
609     )
610    
611     install(DIRECTORY forceFields/
612     DESTINATION forceFields
613 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
614     PATTERN ".svn" EXCLUDE
615 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
616     install(DIRECTORY samples/
617     DESTINATION samples
618 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
619     PATTERN ".svn" EXCLUDE
620 gezelter 1651 PATTERN "*.dump" EXCLUDE
621     PATTERN "*.stat" EXCLUDE
622 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
623 gezelter 1651 INSTALL(FILES "${CMAKE_CURRENT_SOURCE_DIR}/doc/OpenMDmanual.pdf"
624     DESTINATION doc
625     PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)