ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/OpenMD/branches/development/CMakeLists.txt
Revision: 1651
Committed: Tue Sep 27 14:48:28 2011 UTC (13 years, 8 months ago) by gezelter
Content type: text/plain
File size: 20195 byte(s)
Log Message: 
Added "doc" build target.

File Contents

# User Rev Content
1 chuckv 1466 # Top level cmake script for OpenMD.
2    
3     cmake_minimum_required (VERSION 2.6)
4     project(OpenMD)
5    
6     # OpenMD version number.
7 chuckv 1496 set (VERSION_MAJOR "2")
8     set (VERSION_MINOR "0")
9     set (VERSION_TINY "0")
10 chuckv 1466
11     # cmake modules that are needed to build oopse
12 gezelter 1639 SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 gezelter 1647 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14     SET(CMAKE_INSTALL_PREFIX
15     "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16     )
17     ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18 chuckv 1466
19 gezelter 1647 # ---------- Setup output Directories -------------------------
20     SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21     ${PROJECT_BINARY_DIR}/lib
22     CACHE PATH
23     "Single directory for all shared libraries"
24     )
25     # --------- Setup the Executable output Directory -------------
26     SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27     ${PROJECT_BINARY_DIR}/bin
28     CACHE PATH
29     "Single directory for all Executables."
30     )
31     # --------- Setup the static library directory -------------
32     SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33     ${PROJECT_BINARY_DIR}/lib
34     CACHE PATH
35     "Single directory for all static libraries."
36     )
37    
38    
39 gezelter 1626 enable_language(CXX C)
40 chuckv 1466
41 gezelter 1636 if ( APPLE )
42     set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43     set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44     endif( APPLE )
45     FIND_PACKAGE(MPI)
46     IF ( MPI_FOUND )
47     SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48     INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49     ENDIF()
50    
51     FIND_PACKAGE(Subversion)
52     IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53     Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54     MESSAGE("Current revision is ${Project_WC_REVISION}")
55     Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56     SET(SVN_REV ${Project_WC_REVISION})
57     ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58     ENDIF()
59    
60 chuckv 1466 # Optional libraries: If we can find these, we will build with them
61     # Look for OpenBabel libraries
62 chuckv 1496 find_package(OpenBabel2)
63     IF(OPENBABEL2_FOUND)
64     SET(USE_OPENBABEL)
65     include_directories(${OPENBABEL2_INCLUDE_DIR})
66     message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
67     # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
68     ENDIF(OPENBABEL2_FOUND)
69    
70 chuckv 1466 #Look for QHULL Libraries
71     find_package(QHULL)
72 chuckv 1496 IF(QHULL_FOUND)
73     SET(HAVE_QHULL 1)
74 chuckv 1500 include_directories(${QHULL_INCLUDE_DIR})
75 chuckv 1496 LINK_LIBRARIES(${QHULL_LIBRARIES})
76     ENDIF(QHULL_FOUND)
77 chuckv 1466
78 chuckv 1496 # zlib stuff
79     find_package(ZLIB)
80     if(ZLIB_FOUND)
81     SET(HAVE_LIBZ 1)
82     add_definitions(-DHAVE_LIBZ)
83     include_directories(${ZLIB_INCLUDE_DIR})
84     LINK_LIBRARIES(${ZLIB_LIBRARIES})
85     endif(ZLIB_FOUND)
86    
87     #FFTW
88     INCLUDE(${CMAKE_MODULE_PATH}/FindFFTW.cmake)
89     IF(FFTW_FOUND)
90     SET(HAVE_LIBFFTW 1)
91     SET(HAVE_FFTW3_H)
92     INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
93     LINK_LIBRARIES(${FFTW_LIBRARIES})
94     ENDIF(FFTW_FOUND)
95    
96 gezelter 1651 # add a target to generate API documentation with Doxygen
97     find_package(Doxygen)
98     if(DOXYGEN_FOUND)
99     configure_file("${CMAKE_CURRENT_SOURCE_DIR}/doc/Doxyfile.in" "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile" @ONLY)
100     add_custom_target(doc
101     ${DOXYGEN_EXECUTABLE} "${CMAKE_CURRENT_BINARY_DIR}/doc/Doxyfile"
102     WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/doc"
103     COMMENT "Generating API documentation with Doxygen" VERBATIM
104     )
105     endif(DOXYGEN_FOUND)
106 chuckv 1496
107     #include checks
108     include(CheckIncludeFile)
109     CHECK_INCLUDE_FILE(fftw3.h HAVE_FFTW3_H)
110     CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
111     CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
112     CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
113 gezelter 1636 check_include_file(limits.h HAVE_LIMITS_H)
114     check_include_file(stdlib.h HAVE_STDLIB_H)
115     check_include_file(string.h HAVE_STRING_H)
116     check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
117     check_include_file(unistd.h HAVE_UNISTD_H)
118 chuckv 1496
119     #symbol checks
120     include(CheckSymbolExists)
121    
122     #function checks
123     include(CheckFunctionExists)
124 gezelter 1636 check_function_exists(atexit HAVE_ATEXIT)
125 chuckv 1496 check_function_exists(floor HAVE_FLOOR)
126 gezelter 1636 check_function_exists(pow HAVE_POW)
127     check_function_exists(select HAVE_SELECT)
128     check_function_exists(sqrt HAVE_SQRT)
129     check_function_exists(strcasecmp HAVE_STRCASECMP)
130     check_function_exists(strchr HAVE_STRCHR)
131     check_function_exists(strdup HAVE_STRDUP)
132     check_function_exists(strncasecmp HAVE_STRNCASECMP)
133     check_function_exists(strstr HAVE_STRSTR)
134     check_function_exists(strtol HAVE_STRTOL)
135     check_function_exists(strtoull HAVE_STRTOULL)
136     check_function_exists(sysmp HAVE_SYSMP)
137     check_function_exists(table HAVE_TABLE)
138 chuckv 1496
139    
140 gezelter 1639 FIND_PACKAGE(Perl)
141     IF(PERL_FOUND)
142     SET(PERL ${PERL_EXECUTABLE})
143     ELSE(PERL_FOUND)
144     MESSAGE(STATUS "Failed to find perl")
145     ENDIF(PERL_FOUND)
146    
147     FIND_PACKAGE(PythonInterp)
148     IF(PYTHON_EXECUTABLE)
149     SET(PYTHON ${PYTHON_EXECUTABLE})
150     ELSE(PYTHON_EXECUTABLE)
151     MESSAGE(STATUS "Failed to find python")
152     ENDIF(PYTHON_EXECUTABLE)
153    
154     SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
155    
156    
157 chuckv 1496 configure_file (
158     "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
159     "${PROJECT_SOURCE_DIR}/src/config.h"
160     )
161     include_directories (${PROJECT_SOURCE_DIR}/src)
162    
163     #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h)
164    
165    
166 chuckv 1466 #Add executables for build
167 gezelter 1639 set (PROGRAMS
168     openmd
169     openmd_MPI
170     Dump2XYZ
171     simpleBuilder
172     StaticProps
173     DynamicProps
174     randomBuilder
175     nanoparticleBuilder
176     thermalizer
177     atom2md
178     Hydro)
179 chuckv 1466
180 gezelter 1639 set(SOURCE
181     src/antlr/ANTLRUtil.cpp
182     src/antlr/ASTFactory.cpp
183     src/antlr/ASTNULLType.cpp
184     src/antlr/ASTRefCount.cpp
185     src/antlr/BaseAST.cpp
186     src/antlr/BitSet.cpp
187     src/antlr/CharBuffer.cpp
188     src/antlr/CharScanner.cpp
189     src/antlr/CommonAST.cpp
190     src/antlr/CommonASTWithHiddenTokens.cpp
191     src/antlr/CommonHiddenStreamToken.cpp
192     src/antlr/CommonToken.cpp
193     src/antlr/InputBuffer.cpp
194     src/antlr/LLkParser.cpp
195     src/antlr/MismatchedCharException.cpp
196     src/antlr/MismatchedTokenException.cpp
197     src/antlr/NoViableAltException.cpp
198     src/antlr/NoViableAltForCharException.cpp
199     src/antlr/Parser.cpp
200     src/antlr/RecognitionException.cpp
201     src/antlr/String.cpp
202     src/antlr/Token.cpp
203     src/antlr/TokenBuffer.cpp
204     src/antlr/TokenRefCount.cpp
205     src/antlr/TokenStreamBasicFilter.cpp
206     src/antlr/TokenStreamHiddenTokenFilter.cpp
207     src/antlr/TokenStreamRewriteEngine.cpp
208     src/antlr/TokenStreamSelector.cpp
209     src/antlr/TreeParser.cpp
210     src/brains/BlockSnapshotManager.cpp
211     src/brains/DataStorage.cpp
212     src/brains/MoleculeCreator.cpp
213     src/brains/PairList.cpp
214     src/brains/Register.cpp
215     src/brains/SimSnapshotManager.cpp
216     src/brains/Snapshot.cpp
217     src/brains/Stats.cpp
218     src/constraints/Rattle.cpp
219     src/hydrodynamics/Ellipsoid.cpp
220     src/hydrodynamics/HydroProp.cpp
221     src/hydrodynamics/Sphere.cpp
222     src/integrators/DLM.cpp
223     src/integrators/Integrator.cpp
224     src/integrators/IntegratorFactory.cpp
225     src/integrators/LangevinDynamics.cpp
226     src/integrators/LDForceManager.cpp
227     src/integrators/NgammaT.cpp
228     src/integrators/NPAT.cpp
229     src/integrators/NPrT.cpp
230     src/integrators/NPT.cpp
231     src/integrators/NPTf.cpp
232     src/integrators/NPTi.cpp
233     src/integrators/NPTsz.cpp
234     src/integrators/NPTxyz.cpp
235     src/integrators/NVE.cpp
236     src/integrators/NVT.cpp
237     src/integrators/VelocityVerletIntegrator.cpp
238     src/io/AtomTypesSectionParser.cpp
239     src/io/BaseAtomTypesSectionParser.cpp
240     src/io/BendTypesSectionParser.cpp
241     src/io/BondTypesSectionParser.cpp
242     src/io/ChargeAtomTypesSectionParser.cpp
243     src/io/DirectionalAtomTypesSectionParser.cpp
244     src/io/EAMAtomTypesSectionParser.cpp
245     src/io/ForceFieldOptions.cpp
246     src/io/GayBerneAtomTypesSectionParser.cpp
247     src/io/Globals.cpp
248     src/io/gzstream.cpp
249     src/io/InversionTypesSectionParser.cpp
250     src/io/LennardJonesAtomTypesSectionParser.cpp
251     src/io/MultipoleAtomTypesSectionParser.cpp
252     src/io/NonBondedInteractionsSectionParser.cpp
253     src/io/OptionSectionParser.cpp
254     src/io/ParamConstraint.cpp
255     src/io/SCAtomTypesSectionParser.cpp
256     src/io/SectionParser.cpp
257     src/io/SectionParserManager.cpp
258     src/io/ShapeAtomTypesSectionParser.cpp
259     src/io/StickyAtomTypesSectionParser.cpp
260     src/io/StickyPowerAtomTypesSectionParser.cpp
261     src/io/TorsionTypesSectionParser.cpp
262     src/io/ZConsReader.cpp
263     src/lattice/CubicLattice.cpp
264     src/lattice/FCCLattice.cpp
265     src/lattice/Lattice.cpp
266     src/lattice/LatticeFactory.cpp
267     src/lattice/shapedLattice.cpp
268     src/math/ChebyshevT.cpp
269     src/math/ChebyshevU.cpp
270     src/math/CubicSpline.cpp
271     src/math/LegendrePolynomial.cpp
272     src/math/RealSphericalHarmonic.cpp
273     src/math/RMSD.cpp
274     src/math/SeqRandNumGen.cpp
275     src/math/SphericalHarmonic.cpp
276     src/math/Wigner3jm.cpp
277     src/mdParser/FilenameObserver.cpp
278     src/mdParser/MDLexer.cpp
279     src/mdParser/MDParser.cpp
280     src/mdParser/MDTreeParser.cpp
281     src/minimizers/MinimizerFactory.cpp
282     src/minimizers/MinimizerParameterSet.cpp
283     src/nonbonded/EAM.cpp
284     src/nonbonded/Electrostatic.cpp
285     src/nonbonded/GB.cpp
286     src/nonbonded/InteractionManager.cpp
287     src/nonbonded/LJ.cpp
288     src/nonbonded/MAW.cpp
289     src/nonbonded/Morse.cpp
290     src/nonbonded/RepulsivePower.cpp
291     src/nonbonded/SC.cpp
292     src/nonbonded/Sticky.cpp
293     src/nonbonded/SwitchingFunction.cpp
294     src/primitives/Atom.cpp
295     src/primitives/Bend.cpp
296     src/primitives/DirectionalAtom.cpp
297     src/primitives/GhostBend.cpp
298     src/primitives/GhostTorsion.cpp
299     src/primitives/Inversion.cpp
300     src/primitives/Molecule.cpp
301     src/primitives/RigidBody.cpp
302     src/primitives/StuntDouble.cpp
303     src/primitives/Torsion.cpp
304     src/primitives/UreyBradleyBend.cpp
305     src/restraints/MolecularRestraint.cpp
306     src/restraints/ObjectRestraint.cpp
307     src/selection/DistanceFinder.cpp
308     src/selection/HullFinder.cpp
309     src/selection/IndexFinder.cpp
310     src/selection/NameFinder.cpp
311     src/selection/SelectionCompiler.cpp
312     src/selection/SelectionEvaluator.cpp
313     src/selection/SelectionManager.cpp
314     src/selection/SelectionToken.cpp
315     src/selection/TokenMap.cpp
316     src/types/AtomStamp.cpp
317     src/types/AtomType.cpp
318     src/types/BendStamp.cpp
319     src/types/BondStamp.cpp
320     src/types/CharmmTorsionType.cpp
321     src/types/Component.cpp
322     src/types/CutoffGroupStamp.cpp
323     src/types/DirectionalAtomType.cpp
324     src/types/FragmentStamp.cpp
325     src/types/ImproperCosineInversionType.cpp
326     src/types/InversionStamp.cpp
327     src/types/MoleculeStamp.cpp
328     src/types/NonBondedInteractionType.cpp
329     src/types/RestraintStamp.cpp
330     src/types/RigidBodyStamp.cpp
331     src/types/ShapeAtomType.cpp
332     src/types/TorsionStamp.cpp
333     src/types/ZconsStamp.cpp
334     src/UseTheForce/Amber_FF.cpp
335     src/UseTheForce/CLAYFF.cpp
336     src/UseTheForce/DUFF.cpp
337     src/UseTheForce/EADM_FF.cpp
338     src/UseTheForce/EAM_FF.cpp
339     src/UseTheForce/ForceField.cpp
340     src/UseTheForce/ForceFieldFactory.cpp
341     src/UseTheForce/MnM_FF.cpp
342     src/UseTheForce/SC_FF.cpp
343     src/UseTheForce/SHAPES_FF.cpp
344     src/utils/ElementsTable.cpp
345     src/utils/MoLocator.cpp
346     src/utils/OpenMDBitSet.cpp
347     src/utils/PropertyMap.cpp
348     src/utils/StringTokenizer.cpp
349     src/utils/StringUtils.cpp
350     src/utils/Trim.cpp
351     src/utils/Utility.cpp
352     src/utils/wildcards.cpp
353     src/visitors/AtomNameVisitor.cpp
354     src/visitors/AtomVisitor.cpp
355     src/visitors/CompositeVisitor.cpp
356     src/visitors/LipidTransVisitor.cpp
357     src/visitors/OtherVisitor.cpp
358     src/visitors/ReplacementVisitor.cpp
359     src/visitors/RigidBodyVisitor.cpp
360     src/visitors/ZconsVisitor.cpp
361     )
362 chuckv 1466
363 gezelter 1639 set( PARALLEL_SOURCE
364     src/brains/ForceManager.cpp
365     src/brains/SimCreator.cpp
366     src/brains/SimInfo.cpp
367     src/brains/Thermo.cpp
368     src/constraints/ZconstraintForceManager.cpp
369     src/integrators/RNEMD.cpp
370     src/integrators/Velocitizer.cpp
371     src/io/DumpReader.cpp
372     src/io/DumpWriter.cpp
373     src/io/RestReader.cpp
374     src/io/RestWriter.cpp
375     src/io/StatWriter.cpp
376     src/io/ZConsWriter.cpp
377     src/io/ifstrstream.cpp
378     src/math/ParallelRandNumGen.cpp
379     src/minimizers/CGFamilyMinimizer.cpp
380     src/minimizers/Minimizer.cpp
381     src/minimizers/PRCG.cpp
382     src/minimizers/SDMinimizer.cpp
383     src/parallel/ForceDecomposition.cpp
384     src/parallel/ForceMatrixDecomposition.cpp
385     src/restraints/RestraintForceManager.cpp
386     src/restraints/ThermoIntegrationForceManager.cpp
387     src/utils/ProgressBar.cpp
388     src/utils/simError.c
389     )
390    
391     IF(QHULL_FOUND)
392     set(QHULL_SOURCE
393     src/integrators/LangevinHullDynamics.cpp
394     src/math/Triangle.cpp
395     )
396     set(QHULL_PARALLEL_SOURCE
397     src/integrators/LangevinHullForceManager.cpp
398     src/math/ConvexHull.cpp
399     src/math/AlphaHull.cpp
400     )
401     ENDIF(QHULL_FOUND)
402    
403     add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
404     add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
405    
406     IF(MPI_FOUND)
407     add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
408     set_target_properties(openmd_parallel PROPERTIES
409     COMPILE_DEFINITIONS IS_MPI
410     )
411     ENDIF(MPI_FOUND)
412    
413     add_executable(openmd src/applications/openmd/openmd.cpp)
414     target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
415    
416     if (MPI_FOUND)
417     add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
418     set_target_properties(openmd_MPI PROPERTIES
419     COMPILE_DEFINITIONS IS_MPI
420     )
421     target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
422 gezelter 1647 INSTALL(TARGETS
423     openmd_parallel openmd_MPI
424     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
425     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
426     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
427     )
428 gezelter 1639 ENDIF (MPI_FOUND)
429    
430     set (DUMP2XYZSOURCE
431     src/applications/dump2Xyz/Dump2XYZ.cpp
432     src/applications/dump2Xyz/Dump2XYZCmd.c
433     )
434    
435     set (DYNAMICPROPSSOURCE
436     src/applications/dynamicProps/ActionCorrFunc.cpp
437     src/applications/dynamicProps/CrossTimeCorrFunc.cpp
438     src/applications/dynamicProps/DipoleCorrFunc.cpp
439     src/applications/dynamicProps/DirectionalRCorrFunc.cpp
440     src/applications/dynamicProps/DynamicProps.cpp
441     src/applications/dynamicProps/EnergyCorrFunc.cpp
442     src/applications/dynamicProps/FrameTimeCorrFunc.cpp
443     src/applications/dynamicProps/LegendreCorrFunc.cpp
444     src/applications/dynamicProps/MomentumCorrFunc.cpp
445     src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
446     src/applications/dynamicProps/RadialRCorrFunc.cpp
447     src/applications/dynamicProps/RCorrFunc.cpp
448     src/applications/dynamicProps/StressCorrFunc.cpp
449     src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
450     src/applications/dynamicProps/ThetaCorrFunc.cpp
451     src/applications/dynamicProps/TimeCorrFunc.cpp
452     src/applications/dynamicProps/VCorrFunc.cpp
453     src/applications/dynamicProps/DynamicPropsCmd.c
454     )
455    
456     set (HYDROSOURCE
457     src/applications/hydrodynamics/AnalyticalModel.cpp
458     src/applications/hydrodynamics/ApproximationModel.cpp
459     src/applications/hydrodynamics/BeadModel.cpp
460     src/applications/hydrodynamics/CompositeShape.cpp
461     src/applications/hydrodynamics/Hydro.cpp
462     src/applications/hydrodynamics/HydrodynamicsModel.cpp
463     src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
464     src/applications/hydrodynamics/RoughShell.cpp
465     src/applications/hydrodynamics/ShapeBuilder.cpp
466     src/applications/hydrodynamics/HydroCmd.c
467     )
468    
469     set (STATICPROPSSOURCE
470     src/applications/staticProps/AngleR.cpp
471     src/applications/staticProps/BondAngleDistribution.cpp
472     src/applications/staticProps/BondOrderParameter.cpp
473     src/applications/staticProps/BOPofR.cpp
474     src/applications/staticProps/DensityPlot.cpp
475     src/applications/staticProps/GofAngle2.cpp
476     src/applications/staticProps/GofR.cpp
477     src/applications/staticProps/GofRAngle.cpp
478     src/applications/staticProps/GofRZ.cpp
479     src/applications/staticProps/GofXyz.cpp
480     src/applications/staticProps/GofZ.cpp
481     src/applications/staticProps/Hxy.cpp
482     src/applications/staticProps/NanoLength.cpp
483     src/applications/staticProps/NanoVolume.cpp
484     src/applications/staticProps/ObjectCount.cpp
485     src/applications/staticProps/P2OrderParameter.cpp
486     src/applications/staticProps/pAngle.cpp
487     src/applications/staticProps/RadialDistrFunc.cpp
488     src/applications/staticProps/RhoR.cpp
489     src/applications/staticProps/RhoZ.cpp
490     src/applications/staticProps/RippleOP.cpp
491     src/applications/staticProps/SCDOrderParameter.cpp
492     src/applications/staticProps/StaticProps.cpp
493     src/applications/staticProps/TetrahedralityParam.cpp
494     src/applications/staticProps/TwoDGofR.cpp
495     src/applications/staticProps/StaticPropsCmd.c
496     )
497    
498     set (NANOPARTICLEBUILDERSOURCE
499     src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
500     src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
501     src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.c
502     )
503    
504     set (RANDOMBUILDERSOURCE
505     src/applications/randomBuilder/randomBuilder.cpp
506     src/applications/randomBuilder/randomBuilderCmd.c
507     )
508    
509     set(SIMPLEBUILDERSOURCE
510     src/applications/simpleBuilder/simpleBuilder.cpp
511     src/applications/simpleBuilder/simpleBuilderCmd.c
512     )
513    
514     set(THERMALIZERSOURCE
515     src/applications/thermalizer/thermalizer.cpp
516     src/applications/thermalizer/thermalizerCmd.c
517     )
518    
519     add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
520     target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
521     add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
522     target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
523     add_executable(Hydro ${HYDROSOURCE})
524     target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
525     add_executable(StaticProps ${STATICPROPSSOURCE})
526     target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
527     add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
528     target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
529     add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
530     target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
531     add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
532     target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
533     add_executable(thermalizer ${THERMALIZERSOURCE})
534     target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
535    
536     if (OPENBABEL2_FOUND)
537     set (ATOM2MDSOURCE
538     src/applications/atom2md/atom2md.cpp
539     src/applications/atom2md/openmdformat.cpp
540     )
541     add_executable(atom2md ${ATOM2MDSOURCE})
542     target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
543 gezelter 1647 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
544     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
545 gezelter 1639 ENDIF (OPENBABEL2_FOUND)
546    
547    
548     set(PY_FILES
549     src/applications/hydrodynamics/diffExplainer
550     src/applications/utilities/affineScale
551     src/applications/utilities/dumpConverter
552     src/applications/utilities/md-solvator
553     src/applications/utilities/md2md
554     src/applications/utilities/mdSplit
555     src/applications/utilities/principalAxisCalculator
556     src/applications/utilities/stat2visco
557     src/applications/utilities/waterRotator
558     )
559    
560     IF(PYTHON_EXECUTABLE)
561     foreach(PY_FILE ${PY_FILES})
562 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
563     CONFIGURE_FILE(${PY_FILE}
564     "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
565     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
566     DESTINATION bin
567     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
568 gezelter 1639 endforeach(PY_FILE)
569     ENDIF(PYTHON_EXECUTABLE)
570    
571     set(PERL_FILES
572     src/applications/utilities/solvator
573     src/applications/utilities/waterBoxer
574     )
575    
576     IF(PERL_FOUND)
577     foreach(PERL_FILE ${PERL_FILES})
578 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
579     configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
580     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
581     DESTINATION bin
582     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
583    
584 gezelter 1639 endforeach(PERL_FILE)
585     ENDIF(PERL_FOUND)
586 gezelter 1647
587     INSTALL(FILES AUTHORS LICENSE README DESTINATION .
588     PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
589     INSTALL(TARGETS
590     openmd_core
591     openmd_single
592     openmd
593     Dump2XYZ
594     simpleBuilder
595     StaticProps
596     DynamicProps
597     randomBuilder
598     nanoparticleBuilder
599     thermalizer
600     Hydro
601     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
602     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
603     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
604     )
605    
606     install(DIRECTORY forceFields/
607     DESTINATION forceFields
608 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
609     PATTERN ".svn" EXCLUDE
610 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
611     install(DIRECTORY samples/
612     DESTINATION samples
613 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
614     PATTERN ".svn" EXCLUDE
615 gezelter 1651 PATTERN "*.dump" EXCLUDE
616     PATTERN "*.stat" EXCLUDE
617 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
618 gezelter 1651 INSTALL(FILES "${CMAKE_CURRENT_SOURCE_DIR}/doc/OpenMDmanual.pdf"
619     DESTINATION doc
620     PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)