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root/OpenMD/branches/development/CMakeLists.txt
Revision: 1647
Committed: Mon Sep 26 21:20:11 2011 UTC (13 years, 8 months ago) by gezelter
Content type: text/plain
File size: 19345 byte(s)
Log Message: 
fixing the build system

File Contents

# User Rev Content
1 chuckv 1466 # Top level cmake script for OpenMD.
2    
3     cmake_minimum_required (VERSION 2.6)
4     project(OpenMD)
5    
6     # OpenMD version number.
7 chuckv 1496 set (VERSION_MAJOR "2")
8     set (VERSION_MINOR "0")
9     set (VERSION_TINY "0")
10 chuckv 1466
11     # cmake modules that are needed to build oopse
12 gezelter 1639 SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 gezelter 1647 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14     SET(CMAKE_INSTALL_PREFIX
15     "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16     )
17     ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18 chuckv 1466
19 gezelter 1647 # ---------- Setup output Directories -------------------------
20     SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21     ${PROJECT_BINARY_DIR}/lib
22     CACHE PATH
23     "Single directory for all shared libraries"
24     )
25     # --------- Setup the Executable output Directory -------------
26     SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27     ${PROJECT_BINARY_DIR}/bin
28     CACHE PATH
29     "Single directory for all Executables."
30     )
31     # --------- Setup the static library directory -------------
32     SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33     ${PROJECT_BINARY_DIR}/lib
34     CACHE PATH
35     "Single directory for all static libraries."
36     )
37    
38    
39 gezelter 1626 enable_language(CXX C)
40 chuckv 1466
41 gezelter 1636 if ( APPLE )
42     set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43     set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44     endif( APPLE )
45     FIND_PACKAGE(MPI)
46     IF ( MPI_FOUND )
47     SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48     INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49     ENDIF()
50    
51     FIND_PACKAGE(Subversion)
52     IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53     Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54     MESSAGE("Current revision is ${Project_WC_REVISION}")
55     Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56     SET(SVN_REV ${Project_WC_REVISION})
57     ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58     ENDIF()
59    
60 chuckv 1466 # Optional libraries: If we can find these, we will build with them
61     # Look for OpenBabel libraries
62 chuckv 1496 find_package(OpenBabel2)
63     IF(OPENBABEL2_FOUND)
64     SET(USE_OPENBABEL)
65     include_directories(${OPENBABEL2_INCLUDE_DIR})
66     message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
67     # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
68     ENDIF(OPENBABEL2_FOUND)
69    
70 chuckv 1466 #Look for QHULL Libraries
71     find_package(QHULL)
72 chuckv 1496 IF(QHULL_FOUND)
73     SET(HAVE_QHULL 1)
74 chuckv 1500 include_directories(${QHULL_INCLUDE_DIR})
75 chuckv 1496 LINK_LIBRARIES(${QHULL_LIBRARIES})
76     ENDIF(QHULL_FOUND)
77 chuckv 1466
78    
79 chuckv 1496 # zlib stuff
80     find_package(ZLIB)
81     if(ZLIB_FOUND)
82     SET(HAVE_LIBZ 1)
83     add_definitions(-DHAVE_LIBZ)
84     include_directories(${ZLIB_INCLUDE_DIR})
85     LINK_LIBRARIES(${ZLIB_LIBRARIES})
86     endif(ZLIB_FOUND)
87    
88     #FFTW
89     INCLUDE(${CMAKE_MODULE_PATH}/FindFFTW.cmake)
90     IF(FFTW_FOUND)
91     SET(HAVE_LIBFFTW 1)
92     SET(HAVE_FFTW3_H)
93     INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
94     LINK_LIBRARIES(${FFTW_LIBRARIES})
95     ENDIF(FFTW_FOUND)
96    
97    
98     #include checks
99     include(CheckIncludeFile)
100     CHECK_INCLUDE_FILE(fftw3.h HAVE_FFTW3_H)
101     CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
102     CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
103     CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
104 gezelter 1636 check_include_file(limits.h HAVE_LIMITS_H)
105     check_include_file(stdlib.h HAVE_STDLIB_H)
106     check_include_file(string.h HAVE_STRING_H)
107     check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
108     check_include_file(unistd.h HAVE_UNISTD_H)
109 chuckv 1496
110     #symbol checks
111     include(CheckSymbolExists)
112    
113     #function checks
114     include(CheckFunctionExists)
115 gezelter 1636 check_function_exists(atexit HAVE_ATEXIT)
116 chuckv 1496 check_function_exists(floor HAVE_FLOOR)
117 gezelter 1636 check_function_exists(pow HAVE_POW)
118     check_function_exists(select HAVE_SELECT)
119     check_function_exists(sqrt HAVE_SQRT)
120     check_function_exists(strcasecmp HAVE_STRCASECMP)
121     check_function_exists(strchr HAVE_STRCHR)
122     check_function_exists(strdup HAVE_STRDUP)
123     check_function_exists(strncasecmp HAVE_STRNCASECMP)
124     check_function_exists(strstr HAVE_STRSTR)
125     check_function_exists(strtol HAVE_STRTOL)
126     check_function_exists(strtoull HAVE_STRTOULL)
127     check_function_exists(sysmp HAVE_SYSMP)
128     check_function_exists(table HAVE_TABLE)
129 chuckv 1496
130    
131 gezelter 1639 FIND_PACKAGE(Perl)
132     IF(PERL_FOUND)
133     SET(PERL ${PERL_EXECUTABLE})
134     ELSE(PERL_FOUND)
135     MESSAGE(STATUS "Failed to find perl")
136     ENDIF(PERL_FOUND)
137    
138     FIND_PACKAGE(PythonInterp)
139     IF(PYTHON_EXECUTABLE)
140     SET(PYTHON ${PYTHON_EXECUTABLE})
141     ELSE(PYTHON_EXECUTABLE)
142     MESSAGE(STATUS "Failed to find python")
143     ENDIF(PYTHON_EXECUTABLE)
144    
145     SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
146    
147    
148 chuckv 1496 include(CMakePrintSystemInformation)
149    
150     configure_file (
151     "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
152     "${PROJECT_SOURCE_DIR}/src/config.h"
153     )
154     include_directories (${PROJECT_SOURCE_DIR}/src)
155    
156     #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h)
157    
158    
159 chuckv 1466 #Add executables for build
160 gezelter 1639 set (PROGRAMS
161     openmd
162     openmd_MPI
163     Dump2XYZ
164     simpleBuilder
165     StaticProps
166     DynamicProps
167     randomBuilder
168     nanoparticleBuilder
169     thermalizer
170     atom2md
171     Hydro)
172 chuckv 1466
173 gezelter 1639 set(SOURCE
174     src/antlr/ANTLRUtil.cpp
175     src/antlr/ASTFactory.cpp
176     src/antlr/ASTNULLType.cpp
177     src/antlr/ASTRefCount.cpp
178     src/antlr/BaseAST.cpp
179     src/antlr/BitSet.cpp
180     src/antlr/CharBuffer.cpp
181     src/antlr/CharScanner.cpp
182     src/antlr/CommonAST.cpp
183     src/antlr/CommonASTWithHiddenTokens.cpp
184     src/antlr/CommonHiddenStreamToken.cpp
185     src/antlr/CommonToken.cpp
186     src/antlr/InputBuffer.cpp
187     src/antlr/LLkParser.cpp
188     src/antlr/MismatchedCharException.cpp
189     src/antlr/MismatchedTokenException.cpp
190     src/antlr/NoViableAltException.cpp
191     src/antlr/NoViableAltForCharException.cpp
192     src/antlr/Parser.cpp
193     src/antlr/RecognitionException.cpp
194     src/antlr/String.cpp
195     src/antlr/Token.cpp
196     src/antlr/TokenBuffer.cpp
197     src/antlr/TokenRefCount.cpp
198     src/antlr/TokenStreamBasicFilter.cpp
199     src/antlr/TokenStreamHiddenTokenFilter.cpp
200     src/antlr/TokenStreamRewriteEngine.cpp
201     src/antlr/TokenStreamSelector.cpp
202     src/antlr/TreeParser.cpp
203     src/brains/BlockSnapshotManager.cpp
204     src/brains/DataStorage.cpp
205     src/brains/MoleculeCreator.cpp
206     src/brains/PairList.cpp
207     src/brains/Register.cpp
208     src/brains/SimSnapshotManager.cpp
209     src/brains/Snapshot.cpp
210     src/brains/Stats.cpp
211     src/constraints/Rattle.cpp
212     src/hydrodynamics/Ellipsoid.cpp
213     src/hydrodynamics/HydroProp.cpp
214     src/hydrodynamics/Sphere.cpp
215     src/integrators/DLM.cpp
216     src/integrators/Integrator.cpp
217     src/integrators/IntegratorFactory.cpp
218     src/integrators/LangevinDynamics.cpp
219     src/integrators/LDForceManager.cpp
220     src/integrators/NgammaT.cpp
221     src/integrators/NPAT.cpp
222     src/integrators/NPrT.cpp
223     src/integrators/NPT.cpp
224     src/integrators/NPTf.cpp
225     src/integrators/NPTi.cpp
226     src/integrators/NPTsz.cpp
227     src/integrators/NPTxyz.cpp
228     src/integrators/NVE.cpp
229     src/integrators/NVT.cpp
230     src/integrators/VelocityVerletIntegrator.cpp
231     src/io/AtomTypesSectionParser.cpp
232     src/io/BaseAtomTypesSectionParser.cpp
233     src/io/BendTypesSectionParser.cpp
234     src/io/BondTypesSectionParser.cpp
235     src/io/ChargeAtomTypesSectionParser.cpp
236     src/io/DirectionalAtomTypesSectionParser.cpp
237     src/io/EAMAtomTypesSectionParser.cpp
238     src/io/ForceFieldOptions.cpp
239     src/io/GayBerneAtomTypesSectionParser.cpp
240     src/io/Globals.cpp
241     src/io/gzstream.cpp
242     src/io/InversionTypesSectionParser.cpp
243     src/io/LennardJonesAtomTypesSectionParser.cpp
244     src/io/MultipoleAtomTypesSectionParser.cpp
245     src/io/NonBondedInteractionsSectionParser.cpp
246     src/io/OptionSectionParser.cpp
247     src/io/ParamConstraint.cpp
248     src/io/SCAtomTypesSectionParser.cpp
249     src/io/SectionParser.cpp
250     src/io/SectionParserManager.cpp
251     src/io/ShapeAtomTypesSectionParser.cpp
252     src/io/StickyAtomTypesSectionParser.cpp
253     src/io/StickyPowerAtomTypesSectionParser.cpp
254     src/io/TorsionTypesSectionParser.cpp
255     src/io/ZConsReader.cpp
256     src/lattice/CubicLattice.cpp
257     src/lattice/FCCLattice.cpp
258     src/lattice/Lattice.cpp
259     src/lattice/LatticeFactory.cpp
260     src/lattice/shapedLattice.cpp
261     src/math/ChebyshevT.cpp
262     src/math/ChebyshevU.cpp
263     src/math/CubicSpline.cpp
264     src/math/LegendrePolynomial.cpp
265     src/math/RealSphericalHarmonic.cpp
266     src/math/RMSD.cpp
267     src/math/SeqRandNumGen.cpp
268     src/math/SphericalHarmonic.cpp
269     src/math/Wigner3jm.cpp
270     src/mdParser/FilenameObserver.cpp
271     src/mdParser/MDLexer.cpp
272     src/mdParser/MDParser.cpp
273     src/mdParser/MDTreeParser.cpp
274     src/minimizers/MinimizerFactory.cpp
275     src/minimizers/MinimizerParameterSet.cpp
276     src/nonbonded/EAM.cpp
277     src/nonbonded/Electrostatic.cpp
278     src/nonbonded/GB.cpp
279     src/nonbonded/InteractionManager.cpp
280     src/nonbonded/LJ.cpp
281     src/nonbonded/MAW.cpp
282     src/nonbonded/Morse.cpp
283     src/nonbonded/RepulsivePower.cpp
284     src/nonbonded/SC.cpp
285     src/nonbonded/Sticky.cpp
286     src/nonbonded/SwitchingFunction.cpp
287     src/primitives/Atom.cpp
288     src/primitives/Bend.cpp
289     src/primitives/DirectionalAtom.cpp
290     src/primitives/GhostBend.cpp
291     src/primitives/GhostTorsion.cpp
292     src/primitives/Inversion.cpp
293     src/primitives/Molecule.cpp
294     src/primitives/RigidBody.cpp
295     src/primitives/StuntDouble.cpp
296     src/primitives/Torsion.cpp
297     src/primitives/UreyBradleyBend.cpp
298     src/restraints/MolecularRestraint.cpp
299     src/restraints/ObjectRestraint.cpp
300     src/selection/DistanceFinder.cpp
301     src/selection/HullFinder.cpp
302     src/selection/IndexFinder.cpp
303     src/selection/NameFinder.cpp
304     src/selection/SelectionCompiler.cpp
305     src/selection/SelectionEvaluator.cpp
306     src/selection/SelectionManager.cpp
307     src/selection/SelectionToken.cpp
308     src/selection/TokenMap.cpp
309     src/types/AtomStamp.cpp
310     src/types/AtomType.cpp
311     src/types/BendStamp.cpp
312     src/types/BondStamp.cpp
313     src/types/CharmmTorsionType.cpp
314     src/types/Component.cpp
315     src/types/CutoffGroupStamp.cpp
316     src/types/DirectionalAtomType.cpp
317     src/types/FragmentStamp.cpp
318     src/types/ImproperCosineInversionType.cpp
319     src/types/InversionStamp.cpp
320     src/types/MoleculeStamp.cpp
321     src/types/NonBondedInteractionType.cpp
322     src/types/RestraintStamp.cpp
323     src/types/RigidBodyStamp.cpp
324     src/types/ShapeAtomType.cpp
325     src/types/TorsionStamp.cpp
326     src/types/ZconsStamp.cpp
327     src/UseTheForce/Amber_FF.cpp
328     src/UseTheForce/CLAYFF.cpp
329     src/UseTheForce/DUFF.cpp
330     src/UseTheForce/EADM_FF.cpp
331     src/UseTheForce/EAM_FF.cpp
332     src/UseTheForce/ForceField.cpp
333     src/UseTheForce/ForceFieldFactory.cpp
334     src/UseTheForce/MnM_FF.cpp
335     src/UseTheForce/SC_FF.cpp
336     src/UseTheForce/SHAPES_FF.cpp
337     src/utils/ElementsTable.cpp
338     src/utils/MoLocator.cpp
339     src/utils/OpenMDBitSet.cpp
340     src/utils/PropertyMap.cpp
341     src/utils/StringTokenizer.cpp
342     src/utils/StringUtils.cpp
343     src/utils/Trim.cpp
344     src/utils/Utility.cpp
345     src/utils/wildcards.cpp
346     src/visitors/AtomNameVisitor.cpp
347     src/visitors/AtomVisitor.cpp
348     src/visitors/CompositeVisitor.cpp
349     src/visitors/LipidTransVisitor.cpp
350     src/visitors/OtherVisitor.cpp
351     src/visitors/ReplacementVisitor.cpp
352     src/visitors/RigidBodyVisitor.cpp
353     src/visitors/ZconsVisitor.cpp
354     )
355 chuckv 1466
356 gezelter 1639 set( PARALLEL_SOURCE
357     src/brains/ForceManager.cpp
358     src/brains/SimCreator.cpp
359     src/brains/SimInfo.cpp
360     src/brains/Thermo.cpp
361     src/constraints/ZconstraintForceManager.cpp
362     src/integrators/RNEMD.cpp
363     src/integrators/Velocitizer.cpp
364     src/io/DumpReader.cpp
365     src/io/DumpWriter.cpp
366     src/io/RestReader.cpp
367     src/io/RestWriter.cpp
368     src/io/StatWriter.cpp
369     src/io/ZConsWriter.cpp
370     src/io/ifstrstream.cpp
371     src/math/ParallelRandNumGen.cpp
372     src/minimizers/CGFamilyMinimizer.cpp
373     src/minimizers/Minimizer.cpp
374     src/minimizers/PRCG.cpp
375     src/minimizers/SDMinimizer.cpp
376     src/parallel/ForceDecomposition.cpp
377     src/parallel/ForceMatrixDecomposition.cpp
378     src/restraints/RestraintForceManager.cpp
379     src/restraints/ThermoIntegrationForceManager.cpp
380     src/utils/ProgressBar.cpp
381     src/utils/simError.c
382     )
383    
384     IF(QHULL_FOUND)
385     set(QHULL_SOURCE
386     src/integrators/LangevinHullDynamics.cpp
387     src/math/Triangle.cpp
388     )
389     set(QHULL_PARALLEL_SOURCE
390     src/integrators/LangevinHullForceManager.cpp
391     src/math/ConvexHull.cpp
392     src/math/AlphaHull.cpp
393     )
394     ENDIF(QHULL_FOUND)
395    
396     add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
397     add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
398    
399     IF(MPI_FOUND)
400     add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
401     set_target_properties(openmd_parallel PROPERTIES
402     COMPILE_DEFINITIONS IS_MPI
403     )
404     ENDIF(MPI_FOUND)
405    
406     add_executable(openmd src/applications/openmd/openmd.cpp)
407     target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
408    
409     if (MPI_FOUND)
410     add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
411     set_target_properties(openmd_MPI PROPERTIES
412     COMPILE_DEFINITIONS IS_MPI
413     )
414     target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
415 gezelter 1647 INSTALL(TARGETS
416     openmd_parallel openmd_MPI
417     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
418     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
419     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
420     )
421 gezelter 1639 ENDIF (MPI_FOUND)
422    
423     set (DUMP2XYZSOURCE
424     src/applications/dump2Xyz/Dump2XYZ.cpp
425     src/applications/dump2Xyz/Dump2XYZCmd.c
426     )
427    
428     set (DYNAMICPROPSSOURCE
429     src/applications/dynamicProps/ActionCorrFunc.cpp
430     src/applications/dynamicProps/CrossTimeCorrFunc.cpp
431     src/applications/dynamicProps/DipoleCorrFunc.cpp
432     src/applications/dynamicProps/DirectionalRCorrFunc.cpp
433     src/applications/dynamicProps/DynamicProps.cpp
434     src/applications/dynamicProps/EnergyCorrFunc.cpp
435     src/applications/dynamicProps/FrameTimeCorrFunc.cpp
436     src/applications/dynamicProps/LegendreCorrFunc.cpp
437     src/applications/dynamicProps/MomentumCorrFunc.cpp
438     src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
439     src/applications/dynamicProps/RadialRCorrFunc.cpp
440     src/applications/dynamicProps/RCorrFunc.cpp
441     src/applications/dynamicProps/StressCorrFunc.cpp
442     src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
443     src/applications/dynamicProps/ThetaCorrFunc.cpp
444     src/applications/dynamicProps/TimeCorrFunc.cpp
445     src/applications/dynamicProps/VCorrFunc.cpp
446     src/applications/dynamicProps/DynamicPropsCmd.c
447     )
448    
449     set (HYDROSOURCE
450     src/applications/hydrodynamics/AnalyticalModel.cpp
451     src/applications/hydrodynamics/ApproximationModel.cpp
452     src/applications/hydrodynamics/BeadModel.cpp
453     src/applications/hydrodynamics/CompositeShape.cpp
454     src/applications/hydrodynamics/Hydro.cpp
455     src/applications/hydrodynamics/HydrodynamicsModel.cpp
456     src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
457     src/applications/hydrodynamics/RoughShell.cpp
458     src/applications/hydrodynamics/ShapeBuilder.cpp
459     src/applications/hydrodynamics/HydroCmd.c
460     )
461    
462     set (STATICPROPSSOURCE
463     src/applications/staticProps/AngleR.cpp
464     src/applications/staticProps/BondAngleDistribution.cpp
465     src/applications/staticProps/BondOrderParameter.cpp
466     src/applications/staticProps/BOPofR.cpp
467     src/applications/staticProps/DensityPlot.cpp
468     src/applications/staticProps/GofAngle2.cpp
469     src/applications/staticProps/GofR.cpp
470     src/applications/staticProps/GofRAngle.cpp
471     src/applications/staticProps/GofRZ.cpp
472     src/applications/staticProps/GofXyz.cpp
473     src/applications/staticProps/GofZ.cpp
474     src/applications/staticProps/Hxy.cpp
475     src/applications/staticProps/NanoLength.cpp
476     src/applications/staticProps/NanoVolume.cpp
477     src/applications/staticProps/ObjectCount.cpp
478     src/applications/staticProps/P2OrderParameter.cpp
479     src/applications/staticProps/pAngle.cpp
480     src/applications/staticProps/RadialDistrFunc.cpp
481     src/applications/staticProps/RhoR.cpp
482     src/applications/staticProps/RhoZ.cpp
483     src/applications/staticProps/RippleOP.cpp
484     src/applications/staticProps/SCDOrderParameter.cpp
485     src/applications/staticProps/StaticProps.cpp
486     src/applications/staticProps/TetrahedralityParam.cpp
487     src/applications/staticProps/TwoDGofR.cpp
488     src/applications/staticProps/StaticPropsCmd.c
489     )
490    
491     set (NANOPARTICLEBUILDERSOURCE
492     src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
493     src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
494     src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.c
495     )
496    
497     set (RANDOMBUILDERSOURCE
498     src/applications/randomBuilder/randomBuilder.cpp
499     src/applications/randomBuilder/randomBuilderCmd.c
500     )
501    
502     set(SIMPLEBUILDERSOURCE
503     src/applications/simpleBuilder/simpleBuilder.cpp
504     src/applications/simpleBuilder/simpleBuilderCmd.c
505     )
506    
507     set(THERMALIZERSOURCE
508     src/applications/thermalizer/thermalizer.cpp
509     src/applications/thermalizer/thermalizerCmd.c
510     )
511    
512     add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
513     target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
514     add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
515     target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
516     add_executable(Hydro ${HYDROSOURCE})
517     target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
518     add_executable(StaticProps ${STATICPROPSSOURCE})
519     target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
520     add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
521     target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
522     add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
523     target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
524     add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
525     target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
526     add_executable(thermalizer ${THERMALIZERSOURCE})
527     target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
528    
529     if (OPENBABEL2_FOUND)
530     set (ATOM2MDSOURCE
531     src/applications/atom2md/atom2md.cpp
532     src/applications/atom2md/openmdformat.cpp
533     )
534     add_executable(atom2md ${ATOM2MDSOURCE})
535     target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
536 gezelter 1647 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
537     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
538 gezelter 1639 ENDIF (OPENBABEL2_FOUND)
539    
540    
541     set(PY_FILES
542     src/applications/hydrodynamics/diffExplainer
543     src/applications/utilities/affineScale
544     src/applications/utilities/dumpConverter
545     src/applications/utilities/md-solvator
546     src/applications/utilities/md2md
547     src/applications/utilities/mdSplit
548     src/applications/utilities/principalAxisCalculator
549     src/applications/utilities/stat2visco
550     src/applications/utilities/waterRotator
551     )
552    
553     IF(PYTHON_EXECUTABLE)
554     foreach(PY_FILE ${PY_FILES})
555 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
556     CONFIGURE_FILE(${PY_FILE}
557     "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
558     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
559     DESTINATION bin
560     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
561 gezelter 1639 endforeach(PY_FILE)
562     ENDIF(PYTHON_EXECUTABLE)
563    
564     set(PERL_FILES
565     src/applications/utilities/solvator
566     src/applications/utilities/waterBoxer
567     )
568    
569     IF(PERL_FOUND)
570     foreach(PERL_FILE ${PERL_FILES})
571 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
572     configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
573     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
574     DESTINATION bin
575     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
576    
577 gezelter 1639 endforeach(PERL_FILE)
578     ENDIF(PERL_FOUND)
579 gezelter 1647
580     INSTALL(FILES AUTHORS LICENSE README DESTINATION .
581     PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
582     INSTALL(TARGETS
583     openmd_core
584     openmd_single
585     openmd
586     Dump2XYZ
587     simpleBuilder
588     StaticProps
589     DynamicProps
590     randomBuilder
591     nanoparticleBuilder
592     thermalizer
593     Hydro
594     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
595     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
596     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
597     )
598    
599     install(DIRECTORY forceFields/
600     DESTINATION forceFields
601     PATTERN ".svn" EXCLUDE
602     PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
603     install(DIRECTORY samples/
604     DESTINATION samples
605     PATTERN ".svn" EXCLUDE
606     PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)